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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 684 fasta sequence
[GCCAAGATTCGGCACGAGGCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTGCTGTAAATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAAATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCTATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAGAAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGATTATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGTTTCTATCCTGTATCTCATCCACTTGCACGTGTAT-GGTAAATTGTGGTAATTTTTTATCTCTT-GTTAATAAAACTATAATT]
[+] EMBL CD083239 [GCCAAGATTCGGCACGAGGCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTGCTGTAAATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAAATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCTATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAGAAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGATTATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGTTTCTATCCTGTATCTCATCCACTTGCACGTGTATGGGTAAATNGNGGTAATTNTTTATCTCTTGGTAAATAAAACTATAt ]
[-] EMBL CD073326 [ CTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTTCTGTAAATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAAATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCTATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAGAAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGATTATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGTTTCTATCCTGTATCTCATCCACTTGCACGTGTAT GGTAAATTGTGGTAATTTTTTATCTCTT GTTAATAAAACTATAATT]
[-] EMBL CD076810 [ TGAGTGTTTATACTCGACATCCAATAACTAGTATAANAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTGCTGTAAATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAAATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCTATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAGAAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGATTATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGTTTCTATCCTGTATCTCATCCACTTGCACGTGTAT GGTAAATTGTGGTAATTTTTTATCTCTT GTTAATAAAACTATAATT]
consensusID : consensus_7350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence
[GATTATTCTAGAGTAGAAGAAAAATTATCTGAAATTGTCTTAAATCTTTATGCAATGGAATCAGGATTATTCTATTTTAGCGGTTTACTAGATGCGCAACCATCACGCGATCTTTCCTTAGAATTAGCTGCTTTAAAAGTTTTTAGTTCGGAAAAAGTATGGTCAGGCATCGATACATGTATTCAG-CTAGCTGGACGTTTTGGTCTGCTTAAAAATGTTCCATATGAACGATTTCTACGAGATGCTAGAAATCATCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTANAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTTCTGTANATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAATGAACAATGGTATTATGTCGGATAGCAGATGC]
[+] EMBL CD078866 [GATTATTCTAGAGTAGAAGAAAAATTATCTGAAATTGTCTTAAATCTTTATGCAATGGAATCAGGATTATTCTATTTTAGCGGTTTACTAGATGCGCAACCATCACGCGATCTTTCCTTAGAATTAGCTGCTTTAAAAGTTTTTAGTTCGGAAAAAGTATGGTCAGGCATCGATACATGTATTCAG CTAGCTGGACGTTTTGGTCTGCTTAAAAATGTTCCATATGAACGATTTCTACGAGATGCTAGAAATCATCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTANAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTTCTGTANATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAATGAACAATGGTATTATGTCGGATAGCAGATGC]
[-] EMBL CD134192 [ ATCACGCGATCTTTCCTTAGAATTAGCTGCTTTAAGAGTTTTTAGTTCGGAAAAAGTATGGTCAGGCATCGATACATGTATTCAGNCTAGCTGGACGTTTTGGTCTGCTTAAAAATGTTCCATATGAACGATTTCTACGAGATGCTAGAAATCATCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7350#0 ------------------------------------------------------------
consensus_7350#1 GATTATTCTAGAGTAGAAGAAAAATTATCTGAAATTGTCTTAAATCTTTATGCAATGGAA 60
consensus_7350#0 ------------------------------------------------------------
consensus_7350#1 TCAGGATTATTCTATTTTAGCGGTTTACTAGATGCGCAACCATCACGCGATCTTTCCTTA 120
consensus_7350#0 ------------------------------------------------------------
consensus_7350#1 GAATTAGCTGCTTTAAAAGTTTTTAGTTCGGAAAAAGTATGGTCAGGCATCGATACATGT 180
consensus_7350#0 -------------------------------------------------------GCCAA 5
consensus_7350#1 ATTCAGCTAGCTGGACGTTTTGGTCTGCTTAAAAATGTTCCATATGAACGATTTCTACGA 240
* *
consensus_7350#0 GATTC-GGCACGAGGCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCT 64
consensus_7350#1 GATGCTAGAAATCATCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCT 300
*** * * * *********************************************
consensus_7350#0 GGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTT 124
consensus_7350#1 GGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTT 360
************************************************************
consensus_7350#0 TATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAA 184
consensus_7350#1 TATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAA 420
************************************************************
consensus_7350#0 GGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGT 244
consensus_7350#1 GGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGT 480
************************************************************
consensus_7350#0 GATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTGCTGTAAAT 304
consensus_7350#1 GATTTANAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTTCTGTANAT 540
****** ******************************************** ***** **
consensus_7350#0 ACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACA 364
consensus_7350#1 ACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACA 600
************************************************************
consensus_7350#0 AATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCT 424
consensus_7350#1 A-TGAACAA-TGGTATTATGTCGGATAGCAGATGC------------------------- 633
* ******* ** **********************
consensus_7350#0 ATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAG 484
consensus_7350#1 ------------------------------------------------------------
consensus_7350#0 AAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGAT 544
consensus_7350#1 ------------------------------------------------------------
consensus_7350#0 TATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGT 604
consensus_7350#1 ------------------------------------------------------------
consensus_7350#0 TTCTATCCTGTATCTCATCCACTTGCACGTGTATGGTAAATTGTGGTAATTTTTTATCTC 664
consensus_7350#1 ------------------------------------------------------------
consensus_7350#0 TTGTTAATAAAACTATAATT 684
consensus_7350#1 --------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||