cluster # 7356

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Schistosoma mansoni
cluster # 7356 cluster # 7356 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7356#0 length = 584 sequences # 3

consensus_7356#1 length = 549 sequences # 1
consensus_7356#2 length = 393 sequences # 1

consensusID : consensus_7356#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 584
fasta sequence

                              [AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCGCCAACTGTATAATAAAAGCACCAGTAACATTGGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAGGGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACAAGCAATGATGAAGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACTATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGAACCTTTCTCTAACCTTGACATGTTTTGGGACCATATAGAAGAAGTGTATCCATTTCAATTCTTTGGTTTTGTATAATATATCTTTACTCTATGTTGACTGTTAACTGATTGGCTAACATTTCTCGAGGTCACTTAAGATTCGTTCAAAGGTCGTTCATAAATTATGGTCTCACCAACTTATCANATGCTCAATTCTATGTAGATTGTATATAACATGCCAATCAAC]

[+] EMBL CD085150             [AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCGCCAACTGTATAATAAAAGCACCAGTAACATTGGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAGGGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACAAGCAATGATGAAGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACTATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGAACCTTTCTCTAACCTTGACATGTTTTGGGACCATATAGAAGAAGTGTATCCATTTCAATTCTTTGGTTTTGTATAATATATCTTTACTCTATGTTGACTGTTAACTGATTGGCTAACATTTCTCGAGGTCACTTAAGATTCGTTCAAAGGTCGTTCATAAATTATGGTCTCACCAACTTATCANATGCTCAATTCTATGTAGATTGTATATAACATGCCAATCAAC]
[+] EMBL CD085161             [AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCGCCAACTGTATAATAAAAGCACCAGTAACATTGGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAGGGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACAAGCAATGATGAAGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTTCAGAGACCAACTATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGAACCTTTCTCTAACCTTGACATGTTTTGGGACCATATAGAAGAAGTGTATCCATTTCAATTCTTTGGTTTTGTATAATATATCTTTACTCTATGTTGACTGTTAACTGATTGGCTAACATTTCTCGAGGTCACTTAAGATTCGTTCANAGGTCGTTCATANATTATGGTCTCACCAACTTATCANATGCTCAATTCTATGT                          ]
[+] EMBL CD085132             [AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCGCCAACTGTATAATAAAAGCACCAGTAACATTGGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAGGGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACAAGCAATGATGAAGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACTATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGAACCTTTCTCTAACCTTGACATGTTTTGGGACCATATAGAAGAAGTGTATCCATTTCAATTCTTTGGTTTTGTATAATATATCTTTACTCTATGTTGACTGTTAACTGATTGGCTAACATTTCTCGAGGTCACTTAAGATTC                                                                                     ]




>consensus_7356#0
AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTG
AGACTAAGGCATATTATAATAATTGCCGCCAACTGTATAATAAAAGCACCAGTAACATTG
GCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAGG
GACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACAAGCAATGATGAAG
CTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACTAT
TATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGAAC
CTTTCTCTAACCTTGACATGTTTTGGGACCATATAGAAGAAGTGTATCCATTTCAATTCT
TTGGTTTTGTATAATATATCTTTACTCTATGTTGACTGTTAACTGATTGGCTAACATTTC
TCGAGGTCACTTAAGATTCGTTCAAAGGTCGTTCATAAATTATGGTCTCACCAACTTATC
ANATGCTCAATTCTATGTAGATTGTATATAACATGCCAATCAAC

consensusID : consensus_7356#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [AAGTTTTTGAGCTATATGAAAGAAGTGTATCCACTTTAGTTATTTAGTTTTGTATAATATATTTTTACTCCATTCTGACTGTCTACTGATTGACTAACATTTCTCAAGGTCACTTAAGATTCTTTATGGACGAGTCAATCAGAGGCGTTTGAGGGATTTCAAGGTCACGGCGCCAACTTCAGTACCTGATGCTCATGTACGATCGGTTCACAGAGAATCTTAGAGAACACTTGACCATTAAGCGGCTACAACAAATGAAACTACTAAGAAGTTCCTGTATTTGTAAATACGAGTATTAAATGACTTTTAGACCTTGTGCAGACTACTGTGATGTTGTCCTTCGATGTAATATATGTTGACGGAAGACGTTTGCTAGAATACGAACCTTTATCGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCACCAACTGTATAATAAAAGCATCAGTAACGTTGGTCGCAATAATCGCAGATGTTACTGAAGCTTCCGCTGTTCAGTGGTATGAGTATTGTAGGGACATATTCATAATAAAAATGA]

[-] EMBL CD096339             [AAGTTTTTGAGCTATATGAAAGAAGTGTATCCACTTTAGTTATTTAGTTTTGTATAATATATTTTTACTCCATTCTGACTGTCTACTGATTGACTAACATTTCTCAAGGTCACTTAAGATTCTTTATGGACGAGTCAATCAGAGGCGTTTGAGGGATTTCAAGGTCACGGCGCCAACTTCAGTACCTGATGCTCATGTACGATCGGTTCACAGAGAATCTTAGAGAACACTTGACCATTAAGCGGCTACAACAAATGAAACTACTAAGAAGTTCCTGTATTTGTAAATACGAGTATTAAATGACTTTTAGACCTTGTGCAGACTACTGTGATGTTGTCCTTCGATGTAATATATGTTGACGGAAGACGTTTGCTAGAATACGAACCTTTATCGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCACCAACTGTATAATAAAAGCATCAGTAACGTTGGTCGCAATAATCGCAGATGTTACTGAAGCTTCCGCTGTTCAGTGGTATGAGTATTGTAGGGACATATTCATAATAAAAATGA]




>consensus_7356#1
AAGTTTTTGAGCTATATGAAAGAAGTGTATCCACTTTAGTTATTTAGTTTTGTATAATAT
ATTTTTACTCCATTCTGACTGTCTACTGATTGACTAACATTTCTCAAGGTCACTTAAGAT
TCTTTATGGACGAGTCAATCAGAGGCGTTTGAGGGATTTCAAGGTCACGGCGCCAACTTC
AGTACCTGATGCTCATGTACGATCGGTTCACAGAGAATCTTAGAGAACACTTGACCATTA
AGCGGCTACAACAAATGAAACTACTAAGAAGTTCCTGTATTTGTAAATACGAGTATTAAA
TGACTTTTAGACCTTGTGCAGACTACTGTGATGTTGTCCTTCGATGTAATATATGTTGAC
GGAAGACGTTTGCTAGAATACGAACCTTTATCGCTCGATCCAGATTGAGACTAAGGCATA
TTATAATAATTGCCACCAACTGTATAATAAAAGCATCAGTAACGTTGGTCGCAATAATCG
CAGATGTTACTGAAGCTTCCGCTGTTCAGTGGTATGAGTATTGTAGGGACATATTCATAA
TAAAAATGA

consensusID : consensus_7356#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCGCCAACTGTATAATAAAAGCACCAGTAACATTGGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAGGGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACAAGCAATGATGAAGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACTATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGAACCTTTCTCTAACCTTGACTGTTGACGGAAAGAAG]

[+] EMBL CD085377             [AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCGCCAACTGTATAATAAAAGCACCAGTAACATTGGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAGGGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACAAGCAATGATGAAGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACTATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGAACCTTTCTCTAACCTTGACTGTTGACGGAAAGAAG]




>consensus_7356#2
AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTG
AGACTAAGGCATATTATAATAATTGCCGCCAACTGTATAATAAAAGCACCAGTAACATTG
GCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAGG
GACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACAAGCAATGATGAAG
CTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACTAT
TATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGAAC
CTTTCTCTAACCTTGACTGTTGACGGAAAGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7356#0      AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTG 60
consensus_7356#2      AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTG 60
consensus_7356#1      ---AAGTTTTTGAGCTATATGAAAGA-AGTGTATCCACTTTAGTTATTTAGTTTTGTATA 56
                         *  * **  **  * * *   *  **  **   *  **  **  *   *   *  * 

consensus_7356#0      AGACTAAGGCATATTATAATAATTGCC-GCCAACTGTATAATAAAAGCACCAGTAACATT 119
consensus_7356#2      AGACTAAGGCATATTATAATAATTGCC-GCCAACTGTATAATAAAAGCACCAGTAACATT 119
consensus_7356#1      ATATATTTTTACTCCATTCTGACTGTCTACTGATTGACTAACATTTCTCAAGGTCACTTA 116
                      * *       *    **  * * ** *  *  * **  *** *         ** ** * 

consensus_7356#0      GGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAG 179
consensus_7356#2      GGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAG 179
consensus_7356#1      AGAT----TCTTTATGGACG--AGTCAATCAGAGGCGTTTGAGGGATTTCAAGGTCACGG 170
                       * *    *  *    ** *  * * ** *   ***  ** **   * * ** **    *

consensus_7356#0      GGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACA-AGCAATGATGA 238
consensus_7356#2      GGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACA-AGCAATGATGA 238
consensus_7356#1      CGCCAACTTCAGTACC----TGATGCTCATGTACGATCGGTTCACAGAGAATCTTAGAGA 226
                       * **  * **  *      ****   ***  ** * ***   *** * *    *   **

consensus_7356#0      AGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACT 298
consensus_7356#2      AGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACT 298
consensus_7356#1      ACACTTGACCATTAAGCGGCTACAACAAATGAAACTACTAAGAAGTTCCTGTATTTGTAA 286
                      *    **     ** ** *  *       **  **         ***** *         

consensus_7356#0      ATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGA 358
consensus_7356#2      ATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGA 358
consensus_7356#1      ATACGAGTATTAAATGACTTTTAGACCTTG---TGCAGACTACTGTGATGTTGTCCTTCG 343
                      **    *    * ***  *     **  *    *   ** ***  *  **    * **  

consensus_7356#0      ACCTTTCTCTAACCTTGACATGTTTTGGGACCATATAGAAGAAGTGTATCCATTTCAATT 418
consensus_7356#2      ACCTTTCTCTAACCTTGAC---TGTTGA---CGGAAAGAAG------------------- 393
consensus_7356#1      A--TGTAATATATGTTGACG------GAAGACGTTTGCTAGAA---TACGAACCTTTATC 392
                      *  * *     *  *****       *    *       **                   

consensus_7356#0      CTTTGGTTTTGTATAATATATCTTTACTCTATGTTGACTGTTAACTGATTGGCTAACATT 478
consensus_7356#2      ------------------------------------------------------------
consensus_7356#1      GCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCA-CCAACTGTATAATAAA 451
                                                                                  

consensus_7356#0      TCTCGAGGTCACTTAAGATTCGTTCAAAGGTCGTTCATAAATTATGGTCTCACCAACTTA 538
consensus_7356#2      ------------------------------------------------------------
consensus_7356#1      ----AGCATCAGTAACGTTGGTCGCAATAATCG--CAGATGTTACTGAAGCTTCCGCTGT 505
                                                                                  

consensus_7356#0      TCANATGCTCAATTCTATGTAGATTGTATATAACATGCCAATCAAC 584
consensus_7356#2      ----------------------------------------------
consensus_7356#1      TCAGTGGTATGAGTATTGTAGGGACATATTCATAATAAAAATGA-- 549