cluster # 7366

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Schistosoma mansoni
cluster # 7366 cluster # 7366 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7366#0 length = 599 sequences # 4

consensus_7366#1 length = 138 sequences # 1

consensusID : consensus_7366#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 599
fasta sequence

                              [GGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACACCGGCAACATTCACGAGCACTCCATCCACATCCACATCAACACCAACAACACTCACTAATAATCAAACTTCACTGACATCCACATCTTCCAGCCAACTGACAGAATCCGTGAGGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACACCGGCAACATTCACGAGCACTCCATCCACATCCACATCAACACCAACAACACTCACTGATAATCAAACTTCACTGACATCCACATCTTCCAGCCAACTGACAGAATCCGTGAGGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACATATACATCTGCAACAGTTCCA]

[+] EMBL CD126344             [GGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACACCGGCAACATTCACGAGCACTCCATCCACATCCACATCAACACCAACAACACTCACTAATAATCAAACTTCACTGACATCCACATCTTCCAGCCAACTGACAGAATCCGTGAGGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACACCGGCAACATTCACGAGCACTCCATCCACATCCACATCAACACCAACAACACTCACTGATAATCAAACTTCACTGACATCCACATCTTCCAGCCAACTGACAGAATCCGTGAGGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACATATACATCTGCAACAGTTCCA]
[-] EMBL CD126364             [ GACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTGCAACAGCTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD126459             [ GACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAATGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD126589             [                                                                                                                                                                                                                                                                        GGACAACATCGGTTCCAACTAACATCACAACATCAGGTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACACCGGCAACATTCACGAGCACTCCATCCACATCCACATCAACACCAACAACACTCACTGATAATCAAACTTCACTGACATCCACATCTTCCAGCCAACTGACAGAATCCGTGAGGACAACAgggt                                                           ]




>consensus_7366#0
GGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTG
CAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTG
GACAAACGCAAACATTCACTACAGATCGCACACCGGCAACATTCACGAGCACTCCATCCA
CATCCACATCAACACCAACAACACTCACTAATAATCAAACTTCACTGACATCCACATCTT
CCAGCCAACTGACAGAATCCGTGAGGACAACATCGGTTCCAACTAACATCACAACATCAA
GTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTG
ACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACACCGG
CAACATTCACGAGCACTCCATCCACATCCACATCAACACCAACAACACTCACTGATAATC
AAACTTCACTGACATCCACATCTTCCAGCCAACTGACAGAATCCGTGAGGACAACATCGG
TTCCAACTAACATCACAACATCAAGTACTGTAGCCACATATACATCTGCAACAGTTCCA

consensusID : consensus_7366#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 138
fasta sequence

                              [GGTACCCGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACCTCCACCATAGCCACCACCATAGCTGCCGCCACAGTCACCAC]

[+] EMBL CD129392             [GGTACCCGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACCTCCACCATAGCCACCACCATAGCTGCCGCCACAGTCACCAC]




>consensus_7366#1
GGTACCCGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGA
CACTTCACTAACGTCATCAACTGGACAAACGCAAACCTCCACCATAGCCACCACCATAGC
TGCCGCCACAGTCACCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7366#0      GGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTG 60
consensus_7366#1      ------------------------------------------------------------
                                                                                  

consensus_7366#0      CAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTG 120
consensus_7366#1      ------------------------------------------------------------
                                                                                  

consensus_7366#0      GACAAACGCAAACATTCACTACAGATCGCACACCGGCAACATTCACGAGCACTCCATCCA 180
consensus_7366#1      ------------------------------------------------------------
                                                                                  

consensus_7366#0      CATCCACATCAACACCAACAACACTCACTAATAATCAAACTTCACTGACATCCACATCTT 240
consensus_7366#1      ------------------------------------------------------------
                                                                                  

consensus_7366#0      CCAGCCAACTGACAGAATCCGTGAGGACAACATCGGTTCCAACTAACATCACAACATCAA 300
consensus_7366#1      -----------------------------------------------------------G 1
                                                                                  

consensus_7366#0      GTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTG 360
consensus_7366#1      GTACCC--GCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTG 59
                      ****    ****************************************************

consensus_7366#0      ACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACACCGG 420
consensus_7366#1      ACACTTCACTAACGTCATCAACTGGACAAACGCAAACCTCCACCATAGCCACCACCATAG 119
                      ************************************* * *** * **    ***    *

consensus_7366#0      CAACATTCACGAGCACTCCATCCACATCCACATCAACACCAACAACACTCACTGATAATC 480
consensus_7366#1      CTGCCGCCACAGTCACCAC----------------------------------------- 138
                      *  *   ***   ***  *                                         

consensus_7366#0      AAACTTCACTGACATCCACATCTTCCAGCCAACTGACAGAATCCGTGAGGACAACATCGG 540
consensus_7366#1      ------------------------------------------------------------
                                                                                  

consensus_7366#0      TTCCAACTAACATCACAACATCAAGTACTGTAGCCACATATACATCTGCAACAGTTCCA 599
consensus_7366#1      -----------------------------------------------------------