cluster # 7381

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Schistosoma mansoni
cluster # 7381 cluster # 7381 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7381#0 length = 977 sequences # 3

consensus_7381#1 length = 282 sequences # 1
consensus_7381#2 length = 204 sequences # 1

consensusID : consensus_7381#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 977
fasta sequence

                              [TGCCTTCGAGTTCCAGTTCTCACTGTAACAAATTGAAGAGCTCACGCAATATTTTCCTGGTTACAGGCTAGCCACAGTGTTCCAAGAGACCAAACCTTTCTAGTAGGTTTCAGGGAAAATATATGGGGCTTGTGCGTTACCTTAAAAGCGAAGTATATCCAAGTGCTCACTTGTATAACATGCTTTTATGTTACGTTGCCTAACTCTTTAGAACAAGAAATATTTTTTCTTTTCATTAGTCAAGTTATCAGTTTCATATAGATCTAGTTTGATGACGAAGCCACTTTAGACGCATCATGAAGCCATTTAAGTGGTTTTCAGATATGTTACGCAAATACCTGTATCTTGCTCAACGGCCTACCGGATCTAAGTTTACAGACAGACTCTTCCAAGCCGGACATAATCGCTGTCACAGAAACTTGGCTGACTCAGTCTGTAGATGCCGACAGAATCCAGAAGCCCAAACGAGGAGGAGTAGATCTATTCATTAGGAATACTATCCCGTTTACCGTTATTGATAACATCCCATAAAAATGGGACGTGGGAATTAGTTGCCTCTTGAAATACAAATGATGAGAGCTGCTGATTGGTTTGGTCTACCACAGTTCGAACTNTAAGGTTTCTTCTCAGGATGAACTCATTACGAAANCGTT-ATGGGATATGCAGTTCATTTGGATCTATTGGGATTTTTTCTCCAGCTGCAGCAAGAAACGTGATGGGGCTTTTTAACGTTCAATCTCGACTCTATAAAATGCACGACCATTTAGTTCGGAGATGCCCAGATTGTTATTTTGATCGACGTGAAGGCAGGCTTTATGTTGAATGCAAAACTCATCCACGTCATAAACAAGCTCAAAAAATGAGACCACCGAAAGCTCCATGGTTATTTAAACGTCCAATATGGAGGACTGTGTGTTGGTAAAGTAGAAACCTACTATGTACTATGGGCTGTAAACATTTATTAAAATGACAAAAAA]

[+] EMBL CD080262             [TGCCTTCGAGTTCCAGTTCTCACTGTAACAAATTGAAGAGCTCACGCAATATTTTCCTGGTTACAGGCTAGCCACAGTGTTCCAAGAGACCAAACCTTTCTAGTAGGTTTCAGGGAAAATATATGGGGCTTGTGCGTTACCTTAAAAGCGAAGTATATCCAAGTGCTCACTTGTATAACATGCTTTTATGTTACGTTGCCTAACTCTTTAGAACAAGAAATATTTTTTCTTTTCATTAGTCAAGTTATCAGTTTCATATAGATCTAGTTTGATGACGAAGCCACTTTAGACGCATCATGAAGCCATTTAAGTGGTTTTCAGATATGTTACGCAAATACCTGTATCTTGCTCAACGGCCTACCGGATCTAAGTTTACAGACAGACTCTTCCAAGCCGGACATAATCGCTGTCACAGAAACTTGGCTGACTCAGTCTGTAGATGCCGACAGAATCCAGAAGCCCAAACGAGGAGGAGTAGATCTATTCATTAGGAATACTATCCCGTTTACCGTTATTGATAACATCCCATAAAAATGGGACGTGGGAATTAGTTGCCTCTTGAAATACAAATGATGAGAGCTGCTGATTGGTTTGGTCTACCACAGTTCGAACTNTAAGGTTTCTTCTCAGGATGAACTCATTACGAAANCGTT ATGGGATA                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD130039             [                                                                                    AGAGACCAAACCTTTCTAGTAGGTTTCAGGGAGAATATATGGGGCTTGTGCGTTACCTTAAAAGCGAAGTATATCCAAGTGCTCACTTGTATAACATGCTTTTATGTTACGTTGCCTAACTCTTTAGAACAAGAAATATTTTTTCTTTTCATTAGTCAAGTTATCAGTTTCATATAGATCTAGTTTGATGACGAAGCCACTTTAGACGCATCATGAAGCCATTTAAGTGGTTTTCAGATATGTTACGCAAATACCTGTATCTTGCTCAACGGCCTACCGGATCTAAGTTTACAGACAGACTCTTCCAAACCGGACATAATCGCTGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD074180             [                                                                                                                                                                                                                                                                                                                                                                        CCGGATCTAAGTTTACAGACAGACTCTTCCAAGCCGGACATAATCGCTGTCACAGAAACTTGGCTGACTCAGTCTGTAGATGCCGACAGAATCCAGAAGCCCAAACGAGGAGGAGTAGATCTATTCATTAGGAATACTATCCCGTTTACCGTTATTGATAACATCCCATAAAAATGGGACGTGGGAATTAGTTGCCTCTTGAAATACAAATGATGAGAGCTGCTGATTGGTTTGGTCTACCACAGTTCGAACTTTAAGGTTTCTTCTCAGGATGAACTCATTACGAAA CGTTAATGGGATATGCAGTTCATTTGGATCTATTGGGATTTTTTCTCCAGCTGCAGCAAGAAACGTGATGGGGCTTTTTAACGTTCAATCTCGACTCTATAAAATGCACGACCATTTAGTTCGGAGATGCCCAGATTGTTATTTTGATCGACGTGAAGGCAGGCTTTATGTTGAATGCAAAACTCATCCACGTCATAAACAAGCTCAAAAAATGAGACCACCGAAAGCTCCATGGTTATTTAAACGTCCAATATGGAGGACTGTGTGTTGGTAAAGTAGAAACCTACTATGTACTATGGGCTGTAAACATTTATTAAAATGACAAAAAA]




>consensus_7381#0
TGCCTTCGAGTTCCAGTTCTCACTGTAACAAATTGAAGAGCTCACGCAATATTTTCCTGG
TTACAGGCTAGCCACAGTGTTCCAAGAGACCAAACCTTTCTAGTAGGTTTCAGGGAAAAT
ATATGGGGCTTGTGCGTTACCTTAAAAGCGAAGTATATCCAAGTGCTCACTTGTATAACA
TGCTTTTATGTTACGTTGCCTAACTCTTTAGAACAAGAAATATTTTTTCTTTTCATTAGT
CAAGTTATCAGTTTCATATAGATCTAGTTTGATGACGAAGCCACTTTAGACGCATCATGA
AGCCATTTAAGTGGTTTTCAGATATGTTACGCAAATACCTGTATCTTGCTCAACGGCCTA
CCGGATCTAAGTTTACAGACAGACTCTTCCAAGCCGGACATAATCGCTGTCACAGAAACT
TGGCTGACTCAGTCTGTAGATGCCGACAGAATCCAGAAGCCCAAACGAGGAGGAGTAGAT
CTATTCATTAGGAATACTATCCCGTTTACCGTTATTGATAACATCCCATAAAAATGGGAC
GTGGGAATTAGTTGCCTCTTGAAATACAAATGATGAGAGCTGCTGATTGGTTTGGTCTAC
CACAGTTCGAACTNTAAGGTTTCTTCTCAGGATGAACTCATTACGAAANCGTTATGGGAT
ATGCAGTTCATTTGGATCTATTGGGATTTTTTCTCCAGCTGCAGCAAGAAACGTGATGGG
GCTTTTTAACGTTCAATCTCGACTCTATAAAATGCACGACCATTTAGTTCGGAGATGCCC
AGATTGTTATTTTGATCGACGTGAAGGCAGGCTTTATGTTGAATGCAAAACTCATCCACG
TCATAAACAAGCTCAAAAAATGAGACCACCGAAAGCTCCATGGTTATTTAAACGTCCAAT
ATGGAGGACTGTGTGTTGGTAAAGTAGAAACCTACTATGTACTATGGGCTGTAAACATTT
ATTAAAATGACAAAAAA

consensusID : consensus_7381#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [CGAGGCGATTGACCTTCTTATTCTTGCTAGCGAAAACTGAAAAAAGGTCTGGAATCGAAAAAGAGTAACAAAAATCGAGCTCTAAGAAATCTATCGGCAATTACAAACTTGTTGCAAGGATATTGGATATTGTTTTTAACCCGGGTAATAACTTTGCAACGTTACTTTGCAATTGGCTACCAGGGCACTTGTTCCTTTTTCTTTACAGGTAGGGATATGTTTTTACTGAAAGTCTCAGAAACTACTGGAAGGTCCATTTAATATTCCAAATGCCTTCGAGTG]

[+] EMBL CD083675             [CGAGGCGATTGACCTTCTTATTCTTGCTAGCGAAAACTGAAAAAAGGTCTGGAATCGAAAAAGAGTAACAAAAATCGAGCTCTAAGAAATCTATCGGCAATTACAAACTTGTTGCAAGGATATTGGATATTGTTTTTAACCCGGGTAATAACTTTGCAACGTTACTTTGCAATTGGCTACCAGGGCACTTGTTCCTTTTTCTTTACAGGTAGGGATATGTTTTTACTGAAAGTCTCAGAAACTACTGGAAGGTCCATTTAATATTCCAAATGCCTTCGAGTG]




>consensus_7381#1
CGAGGCGATTGACCTTCTTATTCTTGCTAGCGAAAACTGAAAAAAGGTCTGGAATCGAAA
AAGAGTAACAAAAATCGAGCTCTAAGAAATCTATCGGCAATTACAAACTTGTTGCAAGGA
TATTGGATATTGTTTTTAACCCGGGTAATAACTTTGCAACGTTACTTTGCAATTGGCTAC
CAGGGCACTTGTTCCTTTTTCTTTACAGGTAGGGATATGTTTTTACTGAAAGTCTCAGAA
ACTACTGGAAGGTCCATTTAATATTCCAAATGCCTTCGAGTG

consensusID : consensus_7381#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence

                              [GCACTTGTTCCTTTTTCTTTACAGGTTTCTTCTCAGGATGAACTCATTACGAAACGTTAATGGGATATGCAGTTCATTTGGATCTATTGGGATTTTTTCTCCAGCTGCAGCAAGAAACGTGATGGGGCTTTTTAACGTTCAATCTCGACTCTATAAAATGCACGACCATTTAGTTCGGAGATGCCCAGATTGTTATTTTGATCG]

[-] EMBL CD188996             [GCACTTGTTCCTTTTTCTTTACAGGTTTCTTCTCAGGATGAACTCATTACGAAACGTTAATGGGATATGCAGTTCATTTGGATCTATTGGGATTTTTTCTCCAGCTGCAGCAAGAAACGTGATGGGGCTTTTTAACGTTCAATCTCGACTCTATAAAATGCACGACCATTTAGTTCGGAGATGCCCAGATTGTTATTTTGATCG]




>consensus_7381#2
GCACTTGTTCCTTTTTCTTTACAGGTTTCTTCTCAGGATGAACTCATTACGAAACGTTAA
TGGGATATGCAGTTCATTTGGATCTATTGGGATTTTTTCTCCAGCTGCAGCAAGAAACGT
GATGGGGCTTTTTAACGTTCAATCTCGACTCTATAAAATGCACGACCATTTAGTTCGGAG
ATGCCCAGATTGTTATTTTGATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7381#0      TGCCTTCGAGTTCCAGTTCTCACTGTAACAAATTGAAGAGCTCACGCAATATTTTCCTGG 60
consensus_7381#2      ------------------------------------------------------------
consensus_7381#1      ------------------------------------------------------------
                                                                                  

consensus_7381#0      TTACAGGCTAGCCACAGTGTTCCAAGAGACCAAACCTTTCTAGTAGGTTTCAGGGAAAAT 120
consensus_7381#2      ------------------------------------------------------------
consensus_7381#1      ------------------------------------------------------------
                                                                                  

consensus_7381#0      ATATGGGGCTTGTGCGTTACCTTAAAAGCGAAGTATATCCAAGTGCTCACTTGTATAACA 180
consensus_7381#2      ------------------------------------------------------------
consensus_7381#1      ------------------------------------------------------------
                                                                                  

consensus_7381#0      TGCTTTTATGTTACGTTGCCTAACTCTTTAGAACAAGAAATATTTTTTCTTTTCATTAGT 240
consensus_7381#2      ------------------------------------------------------------
consensus_7381#1      ------------------------------------------------------------
                                                                                  

consensus_7381#0      CAAGTTATCAGTTTCATATAGATCTAGTTTGATGACGAAGCCACTTTAGACGCATCATGA 300
consensus_7381#2      ------------------------------------------------------------
consensus_7381#1      ------------------------------------------------------------
                                                                                  

consensus_7381#0      AGCCATTTAAGTGGTTTTCAGATATGTTACGCAAATACCTGTATCTTGCTCAACGGCCTA 360
consensus_7381#2      ------------------------------------------------------------
consensus_7381#1      ------------------------------------------------------------
                                                                                  

consensus_7381#0      CCGGATCTAAGTTTACAGACAGACTCTTCCAAGCCGGACATAATCGCTGTCACAGAAACT 420
consensus_7381#2      ------------------------------------------------------------
consensus_7381#1      ------------------------------------------------------------
                                                                                  

consensus_7381#0      TGGCTGACTCAGTCTGTAGATGCCGACAGAATCCAGAAGCCCAAACGAGGAGGAGTAGAT 480
consensus_7381#2      ------------------------------------------------------------
consensus_7381#1      ------------------------------------------------------------
                                                                                  

consensus_7381#0      CTATTCATTAGGAATACTATCCCGTTTACCGTTATTGATAACATCCCATAAAAATGGGAC 540
consensus_7381#2      ------------------------------------------------------------
consensus_7381#1      ------------------------------------------------------------
                                                                                  

consensus_7381#0      GTGGGAATTAGTTGCCTCTTGAAATACAAATGATGAGAGCTGCTGATTGGTTTGGTCTAC 600
consensus_7381#2      -------------------------------------------------------GCACT 5
consensus_7381#1      ---------------------------------------------------CGAGGCGAT 9
                                                                              *   

consensus_7381#0      CACAGTTCGAACT-NTA-AGGTTTCTTCTCAGGATGAACTC---ATTACGAAANCGTTAT 655
consensus_7381#2      TGTTCCTTTTTCT-TTACAGGTTTCTTCTCAGGATGAACTC---ATTACGAAACGTTAAT 61
consensus_7381#1      TGACCTTCTTATTCTTGCTAGCGAAAACTGAAAAAAGGTCTGGAATCGAAAAAGAGTAAC 69
                            *     *  *    *      ** *  *          **    ***   * * 

consensus_7381#0      GGGATATGCAGTTCATTTGGATCTATTGGGATTTTTTCTCCAGCTGCAGCAAGAAACGTG 715
consensus_7381#2      GGGATATGCAGTTCATTTGGATCTATTGGGATTTTTTCTCCAGCTGCAGCAAGAAACGTG 121
consensus_7381#1      AAAA-ATCGAGCTCTAAGAAATCTATCGGCAATTACAAACTTGTTGCA--AGGATATTGG 126
                         * **  ** **      ****** ** * **     *  * ****  * ** *   *

consensus_7381#0      ATGGGGCTTTTTAACGTTCAATCTCGACTCTATAAAAT-GCACGACCATTTAGTTCGGAG 774
consensus_7381#2      ATGGGGCTTTTTAACGTTCAATCTCGACTCTATAAAAT-GCACGACCATTTAGTTCGGAG 180
consensus_7381#1      ATATTG-TTTTTAAC-CCGGGTAATAACTTTGCAACGTTACTTTGCAATTGGCTACCAGG 184
                      **   * ********      *    *** *  **  *  *    * ***   * *   *

consensus_7381#0      ATGCCCAGATTGTTATTTTGATCGACGTGAAGGCAGGCTTTATGTTGAATGCAAAACTCA 834
consensus_7381#2      ATGCCCAGATTGTTATTTTGATCG------------------------------------ 204
consensus_7381#1      GCACTTGTTCCTTTTTCTTTACAGGTAGGGATATGTTTTTACTGAAAGTCTCAGAAACTA 244
                         *        ** * ** *  *                                    

consensus_7381#0      TCCACGTCATAAACAAGCTCAAAAAATGAGACCACCGAAAGCTCCATGGTTATTTAAACG 894
consensus_7381#2      ------------------------------------------------------------
consensus_7381#1      CTGGAAGGTCCATTTAATATTCCAAATGCCTTCGAGTG---------------------- 282
                                                                                  

consensus_7381#0      TCCAATATGGAGGACTGTGTGTTGGTAAAGTAGAAACCTACTATGTACTATGGGCTGTAA 954
consensus_7381#2      ------------------------------------------------------------
consensus_7381#1      ------------------------------------------------------------
                                                                                  

consensus_7381#0      ACATTTATTAAAATGACAAAAAA 977
consensus_7381#2      -----------------------
consensus_7381#1      -----------------------