cluster # 7392

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Schistosoma mansoni
cluster # 7392 cluster # 7392 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7392#0 length = 506 sequences # 4

consensus_7392#1 length = 264 sequences # 1

consensusID : consensus_7392#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 506
fasta sequence

                              [AAGACGAAGGGTTGATTTCGTTTATTATTGGACCAAACACAGATATCCAAAATTACAAGCACGTTAAGCAATCATGAAAGAGTAGTGCCGTAAAGCAGGCGAGTGAGAGTCGAATGAGCGAGTACAGTGCAGTGCAGTGAACAGGATTAAGATGTACAATAGTGGAGGCGAGTTTGTACAGGCAACACAATCTTTTGTAGACTTGATTTCATTATATTTCAGCATCGTACTATTTGGACATACTATTTGGCTCACGTTTGTCACTTGTCTACGTCATTCTATGCGTACAATAATTGAAAGATATCATTAAATCCTTGTTCAATAATTGCTATGTGTCCCTGCTACACTCAAAGTTCACAGTTATAAGCTAGTGCAATACTAAGTCAATGATACTTTATTCCCATTCTGCTTAAATGAATATTTGAACGATAATGTATACTGGCAATAATCTGATTGGTATTTGCTTCTTAAGGGTCAAATAAGAAAAGTAATCCTAACATTCCCTA]

[+] EMBL CD089864             [AAGACGAAGGGTTGATTTCGTTTATTATTGGACCAAACACAGATATCCAAAATTACAAGCACGTTAAGCAATCATGAAAGAGTAGTGCCGTAAAGCAGGCGAGTGAGAGTCGAATGAGCGAGTACAGTGCAGTGCAGTGAACAGGATTAAGATGTACAATAGTGGAGGCGAGTTTGTACAGGCAACACAATCTTTTGTAGACTTGATTTCATTATATTTCAGCATCGTACTATTTGGACATACTATTTGGCTCACGTTTGTCACTTGTCTACGTCATTCTATGCGTACAATAATTGAAAGATATCATTAAATCCTTGTTCAATAATTGCTATGTGTCCCTGCTACACTCAAAGTTCACAGTTATAAGCTAGTGCAATACTAAGTCAATGATACTTTATTCCCATTCTGCTTAAATGAATATTTGAACGATAATGTATACTGGCAATAATCTGATTGGTATTTGCTTCTTAAGGGTCAAATAAGAAAAGTAATCCTAACA       ]
[+] EMBL CD089781             [AAGACGAAGGGTTGATTTCGTTTATTATTGGACCAAACACAGATAT CAAAATTACAAGCACGTTAAGCAATCATGAAAGAGTAGTGCCGTAAAGCAGGCGAGTGAGAGTCGAATGAGCGAGTACAGTGCAGTGCAGTGAACAGGATTAAGATGTACAATAGTGGAGGCGAGTTTGTACAGGCAACACAATCTTTTGTAGACTTGATTTCATTATATTTCAGCATCGTACTATTTGGACATACTATTTGGCTCACGTTTGTCACTTGTCTACGTCATTCTATGCGTACAATAATTGAAAGATATCATTAAATCCTTGTTCAATAATTGCTATGTGTCCCTGCTACACTCAAAGTTCACAGTTATAAGCTAGTGCAATACTAAGTCAATGATACTTTATTCCCATTCTGCTTAAATGAATATTTGAACGATAATGTATACTGGCAATAATCTGATTGGTATTTGCTTCTTAAGGGTCAca                           ]
[+] EMBL CD089743             [AAGACGAAGGGTTGATTTCGTTTATTATTGGACCAAACACAGATATCCAAAATTACAAGCACGCTAAGCAATCATGAAAGAGTAGTGCCGTAAAGCAGGCGAGTGAGAGTCGAATGAGCGAGTACAGTGCAGTGCAGTGAACAGGATTAAGATGTACAATAGTGGAGGCGAGTTTGTACAGGCAACACAATCTTTTGTAGACTTGATTTCATTATATTTCAGCATCGTACTATTTGGACATACTATTTGGCTCACGTTTGTCACTTGTCTACGTCATTCTATGCGTACAATAATTGAAAGATATCATTAAATCCTTGTTCAATAATTGCTATGTGTCCCTGCTACACTCAAAGTTCACAGTTATAAGCTAGTGCAATACTAAGTCAATGATACTTTATTCCCATTCTGCTTAAATGAATATTTGAACGATAATGTATACTGGCAATAATCTGATTGGTATTTGCTTCTTAAGGGTC                              ]
[-] EMBL CD089700             [                                                     gACAAGCACGTTAAGCAATCATGAAAGAGTAGTGCCGTAAAGCAGGCGAGTGAGAGTCGAATGAGCGAGTACAGGGCAGTGCAGTGAACAGGATTAAGATGTACAATAGTGGAGGCGAGTTTGTACAGGCAACACAATCTTTTGTAGACTTGATTTCATTATATTTCAGCATCGTACTATTTGGACATACTATTTGGCTCACGTTTGTCACTTGTCTACGTCATTCTATGCGTACAATAATTGAAAGATATCATTAAATCCTTGTTCAATAATTGCTATGTGTCCCTGCTACACTCAAAGTTCACAGTTATAAGCTAGTGCAATACTAAGTCAATGATACTTTATTCCCATTCTGCTTAAATGAATATTTGAACGATAATGTATACTGGCAATAATCTGATTGGTATTTGCTTCTTAAGGGTCAAATAAGAAAAGTAATCCTAACATTCCCTA]




>consensus_7392#0
AAGACGAAGGGTTGATTTCGTTTATTATTGGACCAAACACAGATATCCAAAATTACAAGC
ACGTTAAGCAATCATGAAAGAGTAGTGCCGTAAAGCAGGCGAGTGAGAGTCGAATGAGCG
AGTACAGTGCAGTGCAGTGAACAGGATTAAGATGTACAATAGTGGAGGCGAGTTTGTACA
GGCAACACAATCTTTTGTAGACTTGATTTCATTATATTTCAGCATCGTACTATTTGGACA
TACTATTTGGCTCACGTTTGTCACTTGTCTACGTCATTCTATGCGTACAATAATTGAAAG
ATATCATTAAATCCTTGTTCAATAATTGCTATGTGTCCCTGCTACACTCAAAGTTCACAG
TTATAAGCTAGTGCAATACTAAGTCAATGATACTTTATTCCCATTCTGCTTAAATGAATA
TTTGAACGATAATGTATACTGGCAATAATCTGATTGGTATTTGCTTCTTAAGGGTCAAAT
AAGAAAAGTAATCCTAACATTCCCTA

consensusID : consensus_7392#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence

                              [CTCACTGACTCGATCACTCACTCAACTCGCACGGTCACTCGCTTGCTTTACGGCACTAATCCTTCATGCTTGCTTAACGTGCCTGTAATTTTGGATATCTGTGTGTGGTCCAATAATAAACGCAATCAACACTTCGTATTCGCCTTCTGATTGATACACCGTTGGAGTGTTATCAAGTAACGGTTATCAGAACGAACAATTTACGAAGTTTAAGGATTATATCGAATATCGACTCCTACAAATTAAATACGACCAGACCCCTTG]

[+] EMBL CD128828             [CTCACTGACTCGATCACTCACTCAACTCGCACGGTCACTCGCTTGCTTTACGGCACTAATCCTTCATGCTTGCTTAACGTGCCTGTAATTTTGGATATCTGTGTGTGGTCCAATAATAAACGCAATCAACACTTCGTATTCGCCTTCTGATTGATACACCGTTGGAGTGTTATCAAGTAACGGTTATCAGAACGAACAATTTACGAAGTTTAAGGATTATATCGAATATCGACTCCTACAAATTAAATACGACCAGACCCCTTG]




>consensus_7392#1
CTCACTGACTCGATCACTCACTCAACTCGCACGGTCACTCGCTTGCTTTACGGCACTAAT
CCTTCATGCTTGCTTAACGTGCCTGTAATTTTGGATATCTGTGTGTGGTCCAATAATAAA
CGCAATCAACACTTCGTATTCGCCTTCTGATTGATACACCGTTGGAGTGTTATCAAGTAA
CGGTTATCAGAACGAACAATTTACGAAGTTTAAGGATTATATCGAATATCGACTCCTACA
AATTAAATACGACCAGACCCCTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7392#0      AAGACGAAGGGTTGATTTCGTTTATTATTGGACCAAACACAGATATCCAAAATTACAAGC 60
consensus_7392#1      ------------------------------------------------------------
                                                                                  

consensus_7392#0      ACGTTAAGCAATCATGAAAGAGTAGTGCCGTAAAGCAGGCGAGTGAGAGTCGAATGAGCG 120
consensus_7392#1      ------------------------------------------------------------
                                                                                  

consensus_7392#0      AGTACAGTGCAGTGCAGTGAACAGGATTAAGATGTACAATAGTGGAGGCGAGTTTGTACA 180
consensus_7392#1      ------------------------------------------------------------
                                                                                  

consensus_7392#0      GGCAACACAATCTTTTGTAGACTTGATTTCATTATATTTCAGCATCGTACTATTTGGACA 240
consensus_7392#1      ---------------------------------------------CTCACTGACTCGATC 15
                                                                   *  ***   * **  

consensus_7392#0      TACTATTTGGCTCACGTTTGTCACTTGTCTACGTCATTCTATGCGTACAATAATTGAAAG 300
consensus_7392#1      ACTCACTCAACTCGCACG-GTCACTCGCTTGC-----TTTACG-GCACTAATCCTTCATG 68
                          * *   *** *    ****** *  * *     * ** * * ** *    *  * *

consensus_7392#0      ATATCATTAAATCCTTGTTCAATAATTGCTATGTGTCCCTGCTACACTCAAAGTTCACAG 360
consensus_7392#1      CTTGCTTAACGTGCCTGT--AATTTTGGATATCTGTGTGTGGTCCAAT-AATAAACGCAA 125
                       *  * * *  * * ***  ***  * * *** ***   ** * ** * **    * ** 

consensus_7392#0      TTATAAGCTAGTGCAATACTAAGTCAATGATACTTTATTCCCATTCTGCTTA--AATGAA 418
consensus_7392#1      TCAACACTTCGTATT-CGCCTTCTGATTGATACACCGTTGGAGTGTTATCAAGTAACGGT 184
                      * *  *  * **      *    * * ******    **    *  *    *  ** *  

consensus_7392#0      TATTTGAACGA-TAATGTATACTGGC-AATAATCTGATTGGTATTTGCTTCTTAAGGGTC 476
consensus_7392#1      TATCAGAACGAACAATTTACGAAGTTTAAGGATTATATCGAATATCGACTCCTACAAATT 244
                      ***  ******  *** **    *   **  **   ** *    * *  ** **    * 

consensus_7392#0      AAATAAGAAAAGTAATCCTAACATTCCCTA 506
consensus_7392#1      AAATACGACCAGACCCCTTG---------- 264
                      ***** **  **    * *