cluster # 7405

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Schistosoma mansoni
cluster # 7405 cluster # 7405 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7405#0 length = 739 sequences # 4

consensus_7405#1 length = 376 sequences # 1

consensusID : consensus_7405#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 739
fasta sequence

                              [AAAATAGGTGTACGTATACATGCTAAAAACGAAATTAAAATCAATAAGGATAATGATAAATCTAAGAACTCAAAATGCAGAAATCATTTGTTTTTAAGCGAACTACATATGAACGTAGTAAGCAGTAAATAAGAATAATCACAAGAGACAAACGCAACTACAGTGCGATTCAAAGAGACAGAGAGAGAAGCAGGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATACCAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTGAATTTTCTGTATCAACCACACGTTGCATTAACTTGATCAACGTTTCCAATCCATGCCGAAAGCCATCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTCGTAGATAATTTAGCTTTCCAACGGACAAAATCAATTAGATAAACCTCTGTATGTGCAGTATTATGACCATCACTGTCACTGCTTATGTTACTAATATTGTCTCCATTCGAAGAAATAGGAATATCGGAGTTGGTAGTATCGTTTGAACTATTGACTGACTGATTGTCAGCTGTTATTGTGGTAGATGATGTGGAACAGTGATCATTATTACTGTTGTCAATCGTCAATGACTCATGAATCAATAAAAGTGAGGAACGAC]

[+] EMBL CD113086             [AAAATAGGTGTACGTATACATGCTAAAAACGAAATTAAAATCAATAAGGATAATGATAAATCTAAGAACTCAAAATGCAGAAATCATTTGTTTTTAAGCGAACTACATATGAACGTAGTAAGCAGTAAATAAGAATAATCACAAGAGACAAACGCAACTACAGTGCGATTCAAAGAGACAGAGAGAGAAGCAGGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD114864             [                                                                                                                                                                                                GGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAATTACCAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTGAATTTTCTGTATCAACCACACGTTGCATTAACTTGATCAACGTTTCCAATCCATGCCGAAAGCCATCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTCGTAGATAATTTAGCTTTCCAACGGACAAAATCAATTAGATAAACCTCTGTATGTGCAGTATTATGACCATCACTGTCACTGCTTATGTTACTAATATTGTCTCCATTCGAAGAAATAGGAATATCGGAGTTGGTAGTATCGTTTGAACTATTGACTGACTGATTGTCAGCTGTTATTGTGGTAGATGATGTGGAACAGTGATCATTATTACTGTTGTCAATCGTCAATGACTCATGAATCAATAAAAGTGAGGAACGAC]
[+] EMBL CD115050             [                                                                                                                                                                                                GGAGGCTTAAGGAGCTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATACCAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTGAATTTTCTGTATCAACCACACGTTGCATTAACTTGATCAACGTTTCCAATCCATGCCGAAAGCCATCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTCGTAGATAATTTAGCTTTCCAACGGACAAAATCAATTAGATAAACCTCTGTATGTGCAGTATTATGACCATCACTGTCACTGCTTATGTTACTAATATTGTTTCCATTCGAAGAAATAGGAATATCGGAGTTGGTAGTATCGTTTGAACTACTGACTGACTGATTGTCAGCTGTTATTGTGGTAGATGATGTGGAACAGTGATCATTAT                                                   ]
[-] EMBL CD152902             [                                                                                                                                                                                                   GGCTTGAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATACCAATCTGTATATAATAATAAGGGTATTCAGCATCAACACTGTTCTATTTCAGCTGAATTTTCTGTATCAACAACACGTTGCATTAAAATGATCAACGTTTCCAATTCATGCCGAGAGCCATCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTCGTAGATAATTTAGCTTTCCAACGGACAAAATCAAT                                                                                                                                                                                                                                ]




>consensus_7405#0
AAAATAGGTGTACGTATACATGCTAAAAACGAAATTAAAATCAATAAGGATAATGATAAA
TCTAAGAACTCAAAATGCAGAAATCATTTGTTTTTAAGCGAACTACATATGAACGTAGTA
AGCAGTAAATAAGAATAATCACAAGAGACAAACGCAACTACAGTGCGATTCAAAGAGACA
GAGAGAGAAGCAGGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATA
TAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATAC
CAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTGAATTT
TCTGTATCAACCACACGTTGCATTAACTTGATCAACGTTTCCAATCCATGCCGAAAGCCA
TCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTC
GTAGATAATTTAGCTTTCCAACGGACAAAATCAATTAGATAAACCTCTGTATGTGCAGTA
TTATGACCATCACTGTCACTGCTTATGTTACTAATATTGTCTCCATTCGAAGAAATAGGA
ATATCGGAGTTGGTAGTATCGTTTGAACTATTGACTGACTGATTGTCAGCTGTTATTGTG
GTAGATGATGTGGAACAGTGATCATTATTACTGTTGTCAATCGTCAATGACTCATGAATC
AATAAAAGTGAGGAACGAC

consensusID : consensus_7405#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [CCGCCTGGCGTTCGCGGGAATTCAATTCCAGACCCCCCACAACAGAGAGAAGCAGGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATACCAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTAAATTTTCTGTATCAACCACACGTTGCATTAACTTGCTCAACGTTTCCAATCCATGCCGAGAGCCATCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTCGTAGATAATTTAGCTTTCCAACGGACAAAATCAA]

[+] EMBL CD152926             [CCGCCTGGCGTTCGCGGGAATTCAATTCCAGACCCCCCACAACAGAGAGAAGCAGGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATACCAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTAAATTTTCTGTATCAACCACACGTTGCATTAACTTGCTCAACGTTTCCAATCCATGCCGAGAGCCATCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTCGTAGATAATTTAGCTTTCCAACGGACAAAATCAA]




>consensus_7405#1
CCGCCTGGCGTTCGCGGGAATTCAATTCCAGACCCCCCACAACAGAGAGAAGCAGGAGGC
TTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATATAACGCTGATAAGCGTGT
ACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATACCAATCTGTATATAATAAT
AAAATTATTCAGCATCAACACTGTTCTATTTCAGCTAAATTTTCTGTATCAACCACACGT
TGCATTAACTTGCTCAACGTTTCCAATCCATGCCGAGAGCCATCAGTTAGTTCACAACTC
CAACAATCCTTACTACAACCACCACTAATATCATTGTCATTCGTAGATAATTTAGCTTTC
CAACGGACAAAATCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7405#0      AAAATAGGTGTACGTATACATGCTAAAAACGAAATTAAAATCAATAAGGATAATGATAAA 60
consensus_7405#1      ------------------------------------------------------------
                                                                                  

consensus_7405#0      TCTAAGAACTCAAAATGCAGAAATCATTTGTTTTTAAGCGAACTACATATGAACGTAGTA 120
consensus_7405#1      ------------------------------------------------------------
                                                                                  

consensus_7405#0      AGCAGTAAATAAGAATAATCACAAGAGACAAACGCAACTACAGTGCGATTCAAAGAGACA 180
consensus_7405#1      ------------------CCGCCTGGCGTTCGCGGGAATTCAATTCCAGACCCCCCACAA 42
                                         * *  *       **  * * ** * * *  *        *

consensus_7405#0      GAGAGAGAAGCAGGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATA 240
consensus_7405#1      CAGAGAGAAGCAGGAGGCTTAAGGAGTTAGTCACAGTATCCAATCAGAAGCGAGAACATA 102
                       ***********************************************************

consensus_7405#0      TAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATAC 300
consensus_7405#1      TAACGCTGATAAGCGTGTACGTGTGTAGATGTAAATCAATTTCAGAAAGTTGACAAATAC 162
                      ************************************************************

consensus_7405#0      CAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTGAATTT 360
consensus_7405#1      CAATCTGTATATAATAATAAAATTATTCAGCATCAACACTGTTCTATTTCAGCTAAATTT 222
                      ****************************************************** *****

consensus_7405#0      TCTGTATCAACCACACGTTGCATTAACTTGATCAACGTTTCCAATCCATGCCGAAAGCCA 420
consensus_7405#1      TCTGTATCAACCACACGTTGCATTAACTTGCTCAACGTTTCCAATCCATGCCGAGAGCCA 282
                      ****************************** *********************** *****

consensus_7405#0      TCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTC 480
consensus_7405#1      TCAGTTAGTTCACAACTCCAACAATCCTTACTACAACCACCACTAATATCATTGTCATTC 342
                      ************************************************************

consensus_7405#0      GTAGATAATTTAGCTTTCCAACGGACAAAATCAATTAGATAAACCTCTGTATGTGCAGTA 540
consensus_7405#1      GTAGATAATTTAGCTTTCCAACGGACAAAATCAA-------------------------- 376
                      **********************************                          

consensus_7405#0      TTATGACCATCACTGTCACTGCTTATGTTACTAATATTGTCTCCATTCGAAGAAATAGGA 600
consensus_7405#1      ------------------------------------------------------------
                                                                                  

consensus_7405#0      ATATCGGAGTTGGTAGTATCGTTTGAACTATTGACTGACTGATTGTCAGCTGTTATTGTG 660
consensus_7405#1      ------------------------------------------------------------
                                                                                  

consensus_7405#0      GTAGATGATGTGGAACAGTGATCATTATTACTGTTGTCAATCGTCAATGACTCATGAATC 720
consensus_7405#1      ------------------------------------------------------------
                                                                                  

consensus_7405#0      AATAAAAGTGAGGAACGAC 739
consensus_7405#1      -------------------