cluster # 7440

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Schistosoma mansoni
cluster # 7440 cluster # 7440 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7440#0 length = 815 sequences # 3

consensus_7440#1 length = 269 sequences # 1
consensus_7440#2 length = 223 sequences # 1

consensusID : consensus_7440#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 815
fasta sequence

                              [CGNAGCCAANATTCGGCACGAGGCTGGTTTATATGTCAAAAATAGCAGCATTGTTTTATCTACATGGTTTACGTCGGAAAAATCGGTGGACATAGATGTGAAAAGGTTAAAGGAGATGATGAAATCAAAGGACCTTAAATTGATAGATGTTCGAGAACCTGACGAGTTGGAACAAACGGGGAAGATCCCCTATGCTGTTAATATTCCACTCGGCGAAGTCGAGGATGCCTTCAAACTGGATGAGAAAAGTTTCTTAGAGAAGTACAAGTTCCAGAAGCCGAATGTGGCGGACAAAAATGTAGTCTTCAGTTGTAGAAGTGGCGTCAGAAGTATGCGGGCTCTCAAAATCGTTCAGGATTTGGGTTATGAGAATCCTCTCAATCTTGTTGGTGGATACAATGCATGGGCCAAAGAAAATGCAGGGGGGTAGGATGTTATTGACTAAAGTAATTTTCCTTACCAAATATCAAATATGTAACAATGTACAACAATAATATCGTAATGTACATTTATTTACAGTCCAAACAATTTGTGTTATTTTCCGTTCACTACAAGACGTTCTTTAGTCTTC-ACATAACATTATTTTGTTTTGGTGAATATTTTATTTTTGACTTCTTACAAATGAGTTGTTTTTGGATGATTTCGAGATATGGGTGTACGCTGTTAAAACTTGTTGTAAGGTAACACCATTTGACTTTGCTTTTGCAGATATGTGTTATTTTTCCAAAAATTTTTAAGAAATGATTATGAATTTGGCACCCAAAGATTTGATTTCCCTTCACTTAACCTGTTTCTTTCAATAAAATTAAAGACTT]

[+] EMBL CD083217             [CGNAGCCAANATTCGGCACGAGGCTGGTTTATATGTCAAAAATAGCAGCATTGTTTTATCTACATGGTTTACGTCGGAAAAATCGGTGGACATAGATGTGAAAAGGTTAAAGGAGATGATGAAATCAAAGGACCTTAAATTGATAGATGTTCGAGAACCTGACGAGTTGGAACAAACGGGGAAGATCCCCTATGCTGTTAATATTCCACTCGGCGAAGTCGAGGATGCCTTCAAACTGGATGAGAAAAGTTTCTTAGAGAAGTACAAGTTCCAGAAGCCGAATGTGGCGGACAAAAATGTAGTCTTCAGTTGTAGAAGTGGCGTCAGAAGTATGCGGGCTCTCAAAATCGTTCAGGATTTGGGTTATGAGAATCCTCTCAATCTTGTTGGTGGATACAATGCATGGGCCAAAGAAAATGCAGGGGGGTAGGATGTTATTGACTAAAGTAATTTTCCTTACCAAATATCAAATATGTAACAATGTACAACAATAATATCGTAATGTACATTTATTTACAGTCCAAACAATTTGTGTTATTTTCCGTTCACTACAAGACGTTCTTTAGTCTTC ACATAACATTATTTTGTTTTGGTGAATATTTTATTTTTGACTTCTTACA                                                                                                                                                                                                   ]
[+] EMBL CD184142             [                                                                                                                                                                               ACGGGGAAGATCCCCTATGCTGTTAATATTCCACTCGGCGAAGTCGAGGATGCCTTCAAACTGGATGAGAAAAGTTTCTTAGAGAAGTACAAGTTCCAGAAGCCGAATGTGGCGGACAAAAATGTAGTCTTCAGTTGTAGAAGTGGCGTCAGAAGTATGCGGGCTCTCAAAATCGTTCAGGATTTGGGTTATGAGAATCCTCTCAATCTTGTTGGTGGATACAATGCATGGGCCAAAGAAAATGCAGGGGGGTAGGATGTTATTGACTAAAGTAATTTTCCTTACCAAATATCAAATATGTAACAATGTACAACAATAATATCGTAATGTA                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD076788             [                                                                                                                                                                                                                                                                                                                                                                          GTTATGAGAATCCTCTCAATCTTGTTGGTGGATACAATGCATGGGCCAAAGAAAATGCAGGGGGGTAGGATGTTATTCACTAAAGTAATTTTCCTTACCAAATATCAAATATGTACCAATGTACACCAATAATATCGTAATGTACATTTATTTCCAGTCCAAACAATTTGTGTTATTTTCCGTTCACTACAAGACGTTTTTTAGTCTTCAACATAACATTATTTTGTTTTGGTGAATATTTTATTTTTGACTTTTTACAAATGAGTTGTTTTTGGATGATTTCGAGATATGGGTGTACGCTGTTAAAACTTGTTGTAAGGTAACACCATTTGACTTTGCTTTTGCAGATATGTGTTATTTTTCCAAAAATTTTTAAGAAATGATTATGAATTTGGCACCCAAAGATTTGATTTCCCTTCACTTAACCTGTTTCTTTCAATAAAATTAAAGACTT]




>consensus_7440#0
CGNAGCCAANATTCGGCACGAGGCTGGTTTATATGTCAAAAATAGCAGCATTGTTTTATC
TACATGGTTTACGTCGGAAAAATCGGTGGACATAGATGTGAAAAGGTTAAAGGAGATGAT
GAAATCAAAGGACCTTAAATTGATAGATGTTCGAGAACCTGACGAGTTGGAACAAACGGG
GAAGATCCCCTATGCTGTTAATATTCCACTCGGCGAAGTCGAGGATGCCTTCAAACTGGA
TGAGAAAAGTTTCTTAGAGAAGTACAAGTTCCAGAAGCCGAATGTGGCGGACAAAAATGT
AGTCTTCAGTTGTAGAAGTGGCGTCAGAAGTATGCGGGCTCTCAAAATCGTTCAGGATTT
GGGTTATGAGAATCCTCTCAATCTTGTTGGTGGATACAATGCATGGGCCAAAGAAAATGC
AGGGGGGTAGGATGTTATTGACTAAAGTAATTTTCCTTACCAAATATCAAATATGTAACA
ATGTACAACAATAATATCGTAATGTACATTTATTTACAGTCCAAACAATTTGTGTTATTT
TCCGTTCACTACAAGACGTTCTTTAGTCTTCACATAACATTATTTTGTTTTGGTGAATAT
TTTATTTTTGACTTCTTACAAATGAGTTGTTTTTGGATGATTTCGAGATATGGGTGTACG
CTGTTAAAACTTGTTGTAAGGTAACACCATTTGACTTTGCTTTTGCAGATATGTGTTATT
TTTCCAAAAATTTTTAAGAAATGATTATGAATTTGGCACCCAAAGATTTGATTTCCCTTC
ACTTAACCTGTTTCTTTCAATAAAATTAAAGACTT

consensusID : consensus_7440#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence

                              [TTGGTTTCTTATTTTAATTTCCCGCATCCATCCCAATCTCAGGTTTTTGTTTTCGTCAATATGATGGGGCGGGGAAGTGTTTTGATTTGGTTTTTGGTTCTAACCGTCGCTGTTCTGATCGCATCGTATATAAGACCCTTTGACCACATATCTAGATGGTTTACGTCGGAAAAATCGGTGGACATAGATGTGAAAAGGTTAAAGGAGATGATGAAATCCAAGGACCTTAAATTGATAGATGTTCGAGAACCTGACGAGTTGGAACAAAC]

[+] EMBL CD097874             [TTGGTTTCTTATTTTAATTTCCCGCATCCATCCCAATCTCAGGTTTTTGTTTTCGTCAATATGATGGGGCGGGGAAGTGTTTTGATTTGGTTTTTGGTTCTAACCGTCGCTGTTCTGATCGCATCGTATATAAGACCCTTTGACCACATATCTAGATGGTTTACGTCGGAAAAATCGGTGGACATAGATGTGAAAAGGTTAAAGGAGATGATGAAATCCAAGGACCTTAAATTGATAGATGTTCGAGAACCTGACGAGTTGGAACAAAC]




>consensus_7440#1
TTGGTTTCTTATTTTAATTTCCCGCATCCATCCCAATCTCAGGTTTTTGTTTTCGTCAAT
ATGATGGGGCGGGGAAGTGTTTTGATTTGGTTTTTGGTTCTAACCGTCGCTGTTCTGATC
GCATCGTATATAAGACCCTTTGACCACATATCTAGATGGTTTACGTCGGAAAAATCGGTG
GACATAGATGTGAAAAGGTTAAAGGAGATGATGAAATCCAAGGACCTTAAATTGATAGAT
GTTCGAGAACCTGACGAGTTGGAACAAAC

consensusID : consensus_7440#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 223
fasta sequence

                              [TCGAGGCGCAGAATTGGCACGAGGTTTGATTTGGTTTTTGGTTCTAACCGTCGCTGTTCTGATCGCATCGTATATAAGACCCTTTGACCACAGTAAGTAAATCGGTGTCGCGATGCGATCCATACATCTTCGAACCGTTTTCTTGCAAAGTTTTCTAACTGTATCTAGCCGTTCTCGTGTTGCTGCTCCTGGTTTATATGTCAAAATAGCAGCATTGTTTGTA]

[+] EMBL CD078070             [TCGAGGCGCAGAATTGGCACGAGGTTTGATTTGGTTTTTGGTTCTAACCGTCGCTGTTCTGATCGCATCGTATATAAGACCCTTTGACCACAGTAAGTAAATCGGTGTCGCGATGCGATCCATACATCTTCGAACCGTTTTCTTGCAAAGTTTTCTAACTGTATCTAGCCGTTCTCGTGTTGCTGCTCCTGGTTTATATGTCAAAATAGCAGCATTGTTTGTA]




>consensus_7440#2
TCGAGGCGCAGAATTGGCACGAGGTTTGATTTGGTTTTTGGTTCTAACCGTCGCTGTTCT
GATCGCATCGTATATAAGACCCTTTGACCACAGTAAGTAAATCGGTGTCGCGATGCGATC
CATACATCTTCGAACCGTTTTCTTGCAAAGTTTTCTAACTGTATCTAGCCGTTCTCGTGT
TGCTGCTCCTGGTTTATATGTCAAAATAGCAGCATTGTTTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7440#0      ------------------------------------------------------------
consensus_7440#1      TTGGTTTCTTATTTTAATTTCCCGCATCCATCCCAATCTCAGGTTTTTGTTTTCGTCAAT 60
consensus_7440#2      ------------------------------------------------------------
                                                                                  

consensus_7440#0      --------------------------CGNAGCCAANATTCGGCACGAGGCTGGTTTA--T 32
consensus_7440#1      ATGATGGGGCGGGGAAGTGTTTTGATTTGGTTTTTGGTTCTAACCGTCGCTGTTCTGATC 120
consensus_7440#2      -------------------------TCGAGGCGCAGAATTGGCACGAGGTTTGATTTGGT 35
                                                            *     **  * *    *    

consensus_7440#0      ATGTCAAAAATAGCAGCATTGTTT----TATCTACATGGTTTACGTCGGAAAAATCGGTG 88
consensus_7440#1      GCATCGTATATAAGACCCTTTGACCACATATCTAGATGGTTTACGTCGGAAAAATCGGTG 180
consensus_7440#2      TTTTGGTTCTAACCGTCGCTGTTC----TGATCGCATCGTATAT-----AAGACCCTTTG 86
                         *       *    *  *        *      ** ** **      ** *  *  **

consensus_7440#0      GACATAGATGTGAAAAGGTTAAAGGAGATGATGAAATCAAAGGACCTTAAATTGATAGAT 148
consensus_7440#1      GACATAGATGTGAAAAGGTTAAAGGAGATGATGAAATCCAAGGACCTTAAATTGATAGAT 240
consensus_7440#2      ACCACAG---TAAGTAAATCGGTGTCG-CGATGCGATCCATACATCTTCGAACCGT--TT 140
                        ** **   * *  *  *    *  *  ****  *** *   * ***  *    *   *

consensus_7440#0      GTTCGAGAACCTGACGAGTTGGAACAAACGGGGAAGATCCCCTATGCTGTTAATATTCCA 208
consensus_7440#1      GTTCGAGAACCTGACGAGTTGGAACAAAC------------------------------- 269
consensus_7440#2      TCTTGCAAAGTTTTCTAACTGTATCTAGCCG----TTCTCGTGTTGCTGCTCCTGGTTTA 196
                        * *  **  *  * *  ** * * * *                               

consensus_7440#0      CTCGGCGAAGTCGAGGATGCCTTCAAACTGGATGAGAAAAGTTTCTTAGAGAAGTACAAG 268
consensus_7440#1      ------------------------------------------------------------
consensus_7440#2      TATGTCAAAATAGCAGCATTGTTTGTA--------------------------------- 223
                                                                                  

consensus_7440#0      TTCCAGAAGCCGAATGTGGCGGACAAAAATGTAGTCTTCAGTTGTAGAAGTGGCGTCAGA 328
consensus_7440#1      ------------------------------------------------------------
consensus_7440#2      ------------------------------------------------------------
                                                                                  

consensus_7440#0      AGTATGCGGGCTCTCAAAATCGTTCAGGATTTGGGTTATGAGAATCCTCTCAATCTTGTT 388
consensus_7440#1      ------------------------------------------------------------
consensus_7440#2      ------------------------------------------------------------
                                                                                  

consensus_7440#0      GGTGGATACAATGCATGGGCCAAAGAAAATGCAGGGGGGTAGGATGTTATTGACTAAAGT 448
consensus_7440#1      ------------------------------------------------------------
consensus_7440#2      ------------------------------------------------------------
                                                                                  

consensus_7440#0      AATTTTCCTTACCAAATATCAAATATGTAACAATGTACAACAATAATATCGTAATGTACA 508
consensus_7440#1      ------------------------------------------------------------
consensus_7440#2      ------------------------------------------------------------
                                                                                  

consensus_7440#0      TTTATTTACAGTCCAAACAATTTGTGTTATTTTCCGTTCACTACAAGACGTTCTTTAGTC 568
consensus_7440#1      ------------------------------------------------------------
consensus_7440#2      ------------------------------------------------------------
                                                                                  

consensus_7440#0      TTCACATAACATTATTTTGTTTTGGTGAATATTTTATTTTTGACTTCTTACAAATGAGTT 628
consensus_7440#1      ------------------------------------------------------------
consensus_7440#2      ------------------------------------------------------------
                                                                                  

consensus_7440#0      GTTTTTGGATGATTTCGAGATATGGGTGTACGCTGTTAAAACTTGTTGTAAGGTAACACC 688
consensus_7440#1      ------------------------------------------------------------
consensus_7440#2      ------------------------------------------------------------
                                                                                  

consensus_7440#0      ATTTGACTTTGCTTTTGCAGATATGTGTTATTTTTCCAAAAATTTTTAAGAAATGATTAT 748
consensus_7440#1      ------------------------------------------------------------
consensus_7440#2      ------------------------------------------------------------
                                                                                  

consensus_7440#0      GAATTTGGCACCCAAAGATTTGATTTCCCTTCACTTAACCTGTTTCTTTCAATAAAATTA 808
consensus_7440#1      ------------------------------------------------------------
consensus_7440#2      ------------------------------------------------------------
                                                                                  

consensus_7440#0      AAGACTT 815
consensus_7440#1      -------
consensus_7440#2      -------