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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 796 fasta sequence
[AGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACAGTTGCTTGTTTGCAAAGATTTACTCAACATAGTACAGCTAGTGGTAAAGCATTACATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGCCTAACCGAAGCGGTGAAAAGAAGAAGGGAGATACTCTAAGTGGACTAGATGAAAATTTCCAAGGTAAAGGTTTTGAACAAGATGAACATACCTTTATCTCGACCCCAATACATCTTACTGATCCATGTGTATTTAATAGTGAACAGTTAACCAAATATGAAATGAAACCAGACGATAATATTCAATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCCTTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAACCTGTACGTGATCCACACGATAATGATGATATTAAACAAAATATTTTGATTAAATCTAATGATCTCGATGAAACTCGTGTTCTGGTAACAGCGAACTCATGGTGTCCTATGTCATTAAGAACAAAAGATCCTGAATCACAGTTAATATTCAATTCCATTCATAAAGATAATAATAGCAATACTCCTACAAAAACAAATACACCAAAACATTCACCCCCGTCTGTGAGCGTGCCAGAACCTACAATACGCGGTGGAACACTTGATGGATTGCTTATATATGCACTGAACTTATTACAGATGCCTATACCAACTAGTCATCCAGATTATTTATTTCCTGATGTAATTCGTTTAATTTAT]
[-] EMBL CD124955 [AGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACAGTTGCTTGTTTGCAAAGATTTACTCAACATAGTACAGCTAGTGGTAAAGCATTACATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGCCTAACCGAAGCGGTGAAAAGAAGAAGGGAGATACTCTAAGTGGACTAGATGAAAATTTCCAAGGTAAAGGTTTTGAACAAGATGAACATACCTTTATCTCGACCCCAATACATCTTACTGATCCATGTGTATTTAATAGTGAACAGTTAACCAAATATGAAATGAAACCAGACGATAATATTCGATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCCTTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAAC ]
[-] EMBL CD124870 [AGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACAGTTGCTTGTTTGCAAAGATTTACTCAACATAGTTCAGCTAGTGGTAAAGCATTACATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGCCTAACCGAAGCGGTGAAAAGAAGAGGGGAGATACTCTAAGTGGACTAGATGAAAATTTCCAAGGTAAAGGTTTTGAACAAGATGAACATACCTTTATCTCGACCCCAATACATCTTACTGATCCATGTGTATTTAATAGTGAACAGTTAACCAAATATGAAATGAAACCAGACGATAATATTCAATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCCTTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAAC ]
[+] EMBL CD092178 [ ATATTCAATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCCTTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAACCTGTACGTGATCCACACGATAATGATGATATTAAACAAAATATTTTGATTAAATCTAATGATCTCGATGAAACTCGTGTTCTGGTAACAGCGAACTCATGGTGTCCTATGTCATTAAGAACAAAAGATCCTGAATCACAGTTAATATTCAATTCCATTCATAAAGATAATAATAGCAATACTCCTACAAAAACAAATACACCAAAACATTCACCCCCGTCTGTGAGCGTGCCAGAACCTACAATACGCGGTGGAACACTTGATGGATTGCTTATATATGCACTGAACTTATTACAGATGCCTATACCAACTAGTCATCCAGATTATTTATTTCCTGATGTAATTCGTTTAATTTAT]
consensusID : consensus_7445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence
[GAATAAACTTTGCAGATGTTGATTGAATATTATCGTCTGGTTTCATTTCATATCTAGTAATATTGAGTAGATATAATTTTTAATGATCATTAAAGAATGATAAAGTGAGCGAAGAATTGTTTTATTTCGGTCAATATTCCACCATGACAGTATAGTAACGTTTAAGATTATTACTAGGTAACGATCAAGTAATGATAATGAGGTAATGAATAATACGTAGATGGTATTATGATTGGTAAATTTATTTCAAAGTAGTAAATAGTCATGAATCCATTAGAATAATTTCAGCACAAAATTTGAAGTTTTACAACAGTGTTGTTTATCAATACACACCTTAATTGCAACGGTGATTATCTTTCACTAATCTGAATCAAGAATTTTTTCGATCCAGTGTATTATTACAGAGGTTTTAATCACGAAGTGATTTGGTTAACTGTT]
[+] EMBL CD197828 [GAATAAACTTTGCAGATGTTGATTGAATATTATCGTCTGGTTTCATTTCATATCTAGTAATATTGAGTAGATATAATTTTTAATGATCATTAAAGAATGATAAAGTGAGCGAAGAATTGTTTTATTTCGGTCAATATTCCACCATGACAGTATAGTAACGTTTAAGATTATTACTAGGTAACGATCAAGTAATGATAATGAGGTAATGAATAATACGTAGATGGTATTATGATTGGTAAATTTATTTCAAAGTAGTAAATAGTCATGAATCCATTAGAATAATTTCAGCACAAAATTTGAAGTTTTACAACAGTGTTGTTTATCAATACACACCTTAATTGCAACGGTGATTATCTTTCACTAATCTGAATCAAGAATTTTTTCGATCCAGTGTATTATTACAGAGGTTTTAATCACGAAGTGATTTGGTTAACTGTT]
consensusID : consensus_7445#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence
[GGAATTTATCTATCGAGAATAATTCAAATTTGAATGGTACTGTTATTCCTACTGCACCTGAATGGCATCATGCAGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACACTTGCTTGTGTGCAAAGAGTTTACTTCAAATTGATTTAGGTTATTGTTAAACCGTAAAATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGGTATGTATATTTTATGTAAGCTAAATATTATGTTTCTCTTTGTTAAATACTATTAGTTTTTCCAGTGTAAAATTTAACTTCGTTACAGGAATATTTAGTACTTTATTTATTTATTTCATGGACTCCATCTGGGGAATTGTTAAATTATGAAATTTTTGGTCAGCTCT]
[-] EMBL CD139242 [GGAATTTATCTATCGAGAATAATTCAAATTTGAATGGTACTGTTATTCCTACTGCACCTGAATGGCATCATGCAGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACACTTGCTTGTGTGCAAAGAGTTTACTTCAAATTGATTTAGGTTATTGTTAAACCGTAAAATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGGTATGTATATTTTATGTAAGCTAAATATTATGTTTCTCTTTGTTAAATACTATTAGTTTTTCCAGTGTAAAATTTAACTTCGTTACAGGAATATTTAGTACTTTATTTATTTATTTCATGGACTCCATCTGGGGAATTGTTAAATTATGAAATTTTTGGTCAGCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7445#0 ------------------------------------------------------------
consensus_7445#2 GGAATTTATCTATCGAGAATAATTCAAATTTGAATGGTACTGTTATTCCTACTGCACCTG 60
consensus_7445#1 -----GAATAAACTTTGCAGATGTTGATTGAATATTATCGTCTGGTTTCATTTCATATCT 55
consensus_7445#0 -------------AGAAGTTGGTTTAGAAAAT-ATAGAAAAGTTTCAAGG--AGCTTATG 44
consensus_7445#2 AATGGCATCATGCAGAAGTTGGTTTAGAAAAT-ATAGAAAAGTTTCAAGG--AGCTTATG 117
consensus_7445#1 AGTAATATTGAGTAGATATAATTTTTAATGATCATTAAAGAATGATAAAGTGAGCGAAGA 115
*** * *** * ** ** ** * * ** * *** *
consensus_7445#0 TTCGTGGTCGTACAGTTGCTTGTTTGCAAAGA-TTTACTCAACATAG--TACAGCTAGTG 101
consensus_7445#2 TTCGTGGTCGTACACTTGCTTGTGTGCAAAGAGTTTACTTCAAATTGATTTAGGTTATTG 177
consensus_7445#1 ATTGTTTTATTTCGGTCAATATTCCACCATGA--CAGTATAGTAACGTTTAAGATTATTA 173
* ** * * * * * * * * ** * * * ** *
consensus_7445#0 GTAAAGCATTACATAGAAGTACTTATGTA-CAACAAACAAGACTAGTTCGCCAGCCTAAC 160
consensus_7445#2 TTAAACCGTAAAATAGAAGTACTTATGTA-CAACAAACAAGACTAGTTCGCCAGGTATGT 236
consensus_7445#1 CTAGGTAACGATCAAGTAATGATAATGAGGTAATGAATAATACGTAGATGGTATTATGAT 233
** * ** * * * *** ** ** ** ** * *
consensus_7445#0 CGAAGCGGTGAAAAGAAGAAGGGA-GATACTCTAAGTGGACTAG-ATGAAAATTTCCAAG 218
consensus_7445#2 ATATTTTATGTAAGCTAAATATTATGTTTCTCTTTGTTAAATACTATTAGTTTTTCCAGT 296
consensus_7445#1 TGGTAAATTTATTTCAAAGTAGTAAATAGTCATGAATCCATTAG----AATAATTTCAGC 289
* * * * * * ** * ** **
consensus_7445#0 GTAAAGGTTTTGAACAAGATGAACATACCTTTATCTCGACCCCAATACATCTTACTGATC 278
consensus_7445#2 GTAAAA--TTTAACTTCGTTACAGGAATATTTAGTACTTTATTTATTTATTTCATGGACT 354
consensus_7445#1 ACAAAATTTGAAGTTTTACAACAGTGTTGTTTATCAATACACACCTTAATTGCAACGGTG 349
*** * * **** * ** * *
consensus_7445#0 CATGTGTATTTAATAGTGAACAGTTAACCAAATATGAAATGAAACCAGACGATAATATTC 338
consensus_7445#2 C-CATCTGGGGAATTGTTAA---ATTATGAAATTTTTGGTCAGCTCT------------- 397
consensus_7445#1 ATTATCT-TTCACTAATCTG-AATCAAGAATTTTTTCGATCCAGTGTATTATTACAGAGG 407
* * * * * * * * * *
consensus_7445#0 AATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCC 398
consensus_7445#2 ------------------------------------------------------------
consensus_7445#1 TTTTAATCACGAAGTGATTTGGTTAACTGTT----------------------------- 438
consensus_7445#0 TTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAACCTGTACGTGATCCACACG 458
consensus_7445#2 ------------------------------------------------------------
consensus_7445#1 ------------------------------------------------------------
consensus_7445#0 ATAATGATGATATTAAACAAAATATTTTGATTAAATCTAATGATCTCGATGAAACTCGTG 518
consensus_7445#2 ------------------------------------------------------------
consensus_7445#1 ------------------------------------------------------------
consensus_7445#0 TTCTGGTAACAGCGAACTCATGGTGTCCTATGTCATTAAGAACAAAAGATCCTGAATCAC 578
consensus_7445#2 ------------------------------------------------------------
consensus_7445#1 ------------------------------------------------------------
consensus_7445#0 AGTTAATATTCAATTCCATTCATAAAGATAATAATAGCAATACTCCTACAAAAACAAATA 638
consensus_7445#2 ------------------------------------------------------------
consensus_7445#1 ------------------------------------------------------------
consensus_7445#0 CACCAAAACATTCACCCCCGTCTGTGAGCGTGCCAGAACCTACAATACGCGGTGGAACAC 698
consensus_7445#2 ------------------------------------------------------------
consensus_7445#1 ------------------------------------------------------------
consensus_7445#0 TTGATGGATTGCTTATATATGCACTGAACTTATTACAGATGCCTATACCAACTAGTCATC 758
consensus_7445#2 ------------------------------------------------------------
consensus_7445#1 ------------------------------------------------------------
consensus_7445#0 CAGATTATTTATTTCCTGATGTAATTCGTTTAATTTAT 796
consensus_7445#2 --------------------------------------
consensus_7445#1 --------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||