cluster # 7450

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Schistosoma mansoni
cluster # 7450 cluster # 7450 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7450#0 length = 748 sequences # 1

consensus_7450#1 length = 632 sequences # 4

consensusID : consensus_7450#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 748
fasta sequence

                              [TTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCGAAGATGATATTTCCAAACAGATTGTCGTCTGACTGTGCGTTGGACCAGATGAATTAAAACTATTAGATTCTGATGCAAGTTGATTCTCAACACGTTGTCGTTGACTGCGACGGCGTTGCGCTCGAACAGAGGCCTCTGATGTTATTCGTTCACTTAGATCAGCGATTAAATCCTNNGCATACCGACGTCCACGGTGACGTCTAGTAGCCTGCTCTTCGAGCCTCTTTGAGCAGCAAAACTAAGCTCACGTGTTAAATGGGAGGTTTTCTGAGCTAGAACCTNAGGAAGTGTTCAATTCATCGTGTCACTCTCCTCTGGCTCAGAATCATTAACCTTTCTCGAACAC]

[+] EMBL CD115267             [TTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCGAAGATGATATTTCCAAACAGATTGTCGTCTGACTGTGCGTTGGACCAGATGAATTAAAACTATTAGATTCTGATGCAAGTTGATTCTCAACACGTTGTCGTTGACTGCGACGGCGTTGCGCTCGAACAGAGGCCTCTGATGTTATTCGTTCACTTAGATCAGCGATTAAATCCTNNGCATACCGACGTCCACGGTGACGTCTAGTAGCCTGCTCTTCGAGCCTCTTTGAGCAGCAAAACTAAGCTCACGTGTTAAATGGGAGGTTTTCTGAGCTAGAACCTNAGGAAGTGTTCAATTCATCGTGTCACTCTCCTCTGGCTCAGAATCATTAACCTTTCTCGAACAC]




>consensus_7450#0
TTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTA
CAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGG
AATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAG
CGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACG
GACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAG
AACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCG
AATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCGAAGATGATATTTCCAAAC
AGATTGTCGTCTGACTGTGCGTTGGACCAGATGAATTAAAACTATTAGATTCTGATGCAA
GTTGATTCTCAACACGTTGTCGTTGACTGCGACGGCGTTGCGCTCGAACAGAGGCCTCTG
ATGTTATTCGTTCACTTAGATCAGCGATTAAATCCTNNGCATACCGACGTCCACGGTGAC
GTCTAGTAGCCTGCTCTTCGAGCCTCTTTGAGCAGCAAAACTAAGCTCACGTGTTAAATG
GGAGGTTTTCTGAGCTAGAACCTNAGGAAGTGTTCAATTCATCGTGTCACTCTCCTCTGG
CTCAGAATCATTAACCTTTCTCGAACAC

consensusID : consensus_7450#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 632
fasta sequence

                              [ACCCTGATGGTTTCGGGCTAACAGACGATAGGGACGAGGAGAGTTTCCGTATTTTCTTACGCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTGGATTTGCGTAGCTTTTTCTTGACACGTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCTCTGACTGATTATTATCTGATACTTGTTCATTAAAGTCTGACCGAACATTATGAATNTGGCTTTTGTGGTGAGAGTTCGAATAACTGAAGGAGGGTACC]

[-] EMBL CD062035             [ACCCTGATGGTTTCGGGCTAACAGACGATAGGGACGAGGAGAGTTTCCGTATTTTCTTACGCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD123799             [                                               CGTATTTTCTTACGCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTGGATTTGCGTAGCTTTTTCTTGACACGTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCTCTGACTGATTATTATCTGATACTTGTTCATTAAAGTCTGACCGAACA                                                   ]
[-] EMBL CD123808             [                                               CGTATTTTCTTACGCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTGGATTTGCGTAGCTTTTTCTTGACACGTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTATTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCTCTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTATGATCATATGAATCCGAATCACTGATGGATAGTATCCGCAGTTTTTTACGGGAGGGCTTTGACTCATTATTATCTGATACTTGTTCATTAAAGTCTGACCGAACA                                                   ]
[-] EMBL CD129262             [                                                                                          TTTTGGATTTGCGTAGCTTTTTCTTGACACGTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCGGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCTCTGACTGATTATTATCTGATACTTGTTCATTAAAGTCTGACCGAACATTATGAATNTGGCTTTTGTGGTGAGAGTTCGAATAACTGAAGGAGGGTACC]




>consensus_7450#1
ACCCTGATGGTTTCGGGCTAACAGACGATAGGGACGAGGAGAGTTTCCGTATTTTCTTAC
GCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTGGATTTGCGTAGCTTTTTCTTGACAC
GTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCT
GTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATT
TAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCAT
TAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGT
GCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATC
GTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGAT
CATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCTCTGACT
GATTATTATCTGATACTTGTTCATTAAAGTCTGACCGAACATTATGAATNTGGCTTTTGT
GGTGAGAGTTCGAATAACTGAAGGAGGGTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7450#0      ------------------------------------------------------------
consensus_7450#1      ACCCTGATGGTTTCGGGCTAACAGACGATAGGGACGAGGAGAGTTTCCGTATTTTCTTAC 60
                                                                                  

consensus_7450#0      ------------------------------------------------------------
consensus_7450#1      GCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTGGATTTGCGTAGCTTTTTCTTGACAC 120
                                                                                  

consensus_7450#0      ------------TTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCT 48
consensus_7450#1      GTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCT 180
                                  ************************************************

consensus_7450#0      GTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATT 108
consensus_7450#1      GTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATT 240
                      ************************************************************

consensus_7450#0      TAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCAT 168
consensus_7450#1      TAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCAT 300
                      ************************************************************

consensus_7450#0      TAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGT 228
consensus_7450#1      TAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGT 360
                      ************************************************************

consensus_7450#0      GCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATC 288
consensus_7450#1      GCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATC 420
                      ************************************************************

consensus_7450#0      GTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGAT 348
consensus_7450#1      GTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGAT 480
                      ************************************************************

consensus_7450#0      CATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCGAAGA-T 407
consensus_7450#1      CATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCTCTGACT 540
                      *****************************************************   ** *

consensus_7450#0      GAT-ATTTCCAAACAGATTGTCGTCTGACTGTGCGTTGGACCAGATGAATTAAAACTATT 466
consensus_7450#1      GATTATTATCTGATACTTGTTCATTAAAGTCTG-ACCGAACATTATGAATNTGGCTTTTG 599
                      *** ***  *  * *  *  ** *   * * **    * **   ******      * * 

consensus_7450#0      AGATTCTGATGCAAGTTGATTCTCAACACGTTGTCGTTGACTGCGACGGCGTTGCGCTCG 526
consensus_7450#1      TGGTGAGAGTTCGAAT--AACTGAAGGAGGGTACC------------------------- 632
                       * *     * * * *  *     *  * * *  *                         

consensus_7450#0      AACAGAGGCCTCTGATGTTATTCGTTCACTTAGATCAGCGATTAAATCCTNNGCATACCG 586
consensus_7450#1      ------------------------------------------------------------
                                                                                  

consensus_7450#0      ACGTCCACGGTGACGTCTAGTAGCCTGCTCTTCGAGCCTCTTTGAGCAGCAAAACTAAGC 646
consensus_7450#1      ------------------------------------------------------------
                                                                                  

consensus_7450#0      TCACGTGTTAAATGGGAGGTTTTCTGAGCTAGAACCTNAGGAAGTGTTCAATTCATCGTG 706
consensus_7450#1      ------------------------------------------------------------
                                                                                  

consensus_7450#0      TCACTCTCCTCTGGCTCAGAATCATTAACCTTTCTCGAACAC 748
consensus_7450#1      ------------------------------------------