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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1319 fasta sequence
[ACAACTGAACGCGGTATACCAGAAAGAGGTTACATTACCTTAGCTGTACGAATTGAAGGTGATTTATCCAACATTAAAAAACATCCATTTCTATCTGTACATATATTTGATGCACGTTGTATTCTGAGTAGGAATGTAGAACCGAAAGCAGGGAAATTTTATGTGAAAGCACGTCTTCAATTAGCTGGCATAAACAATTCTGTATCCATGTTATCCTTGGATCGAATATCCACAAAATCATTGAAAATTTTTTCTAATAAAATGGATATATTTACAACGAATAGAAATTCTTCAATAGTGCATACTGGTCGTACACCTGTGAAACGTGCTTATCGTTCACCAGTGTTTCGGCATAAAATTGTCTTACCTCTACCATTGAATATAATTGATGCAATAAATAAACGATCAACATCACTTTTTGAATCCATGGAGTCCATTTCATCAATAGACTTAGAAGATGGTACAATACAAAATTATGAGCTTAAAATAGATTTGAAAGAACGTAATGCATGTAAAACAAATGATTTACATGGAACTTCTACTGTTCAATATTTACCATATTGGAGTTCTTCACAACTAATTGGTAGTGTACGTATTCCTATAACATCTAAAATGTGGCAATATCTAATGGAAGATGTGAATAAATTACGTCGTTCTACAGTTGTGAACTTGGAAACCTTTCAAGATATGAAAACAAAAGAGAAATCATTAGAATTATTACCAAATAAATTGTTATGGTTTGTTAGGTGTCTGAAAGTTCCAGATGAAGATGCCAGTTCACGAGGGGAGATTACTTTTGGTATGCAGTATAATCAAGAGACTGGTAGTCTAACTATTAGCCTATTTAATTGTGCTGCAATGAATTTGCCTAAAAGAACAAAGAATTTATTTGTTCGTGCCTCATTGTGTTCAAATTGGAAATTATTTCGAACTGTTCAATCTAGACCAACTGCTCGACTTTCAGTGAATTCAGCAGAGTTTATATTGGGTGAGAAATTAAATGTTATCATTGAAGAAGATATTAGTAGTGTATGTATAATACTGAGTGTGTTCGCACGATCTGGAAGTANACTANCAGAAGCTACTACACTTATTGGGTCGNTGTGTAACTGGACCATCAGATTTAGCTTTGCGTGATGGNACTTACATGGACATCAGTCTGTCTAGACAAGGCATGATAGACGACTCTATCTCTATAATGATACGNATCATGTGAATATGACTTTCATATATACTGACTGTCATGCTAATTGATTCTCTATAATATGATATTTCTACTGTGACTAAGTACACGATGTGCGTATATAATTGGAATTTGT]
[+] EMBL AI976014 [ACAACTGAACGCGGTATACCAGAAAGAGGTTACATTACCTTAGCTGTACGAATTGAAGGTGATTTATCCAACATTAAAAAACATCCATTTCTATCTGTACATATATTTGATGCACGTTGTATTCTGAGTAGGAATGTAGAACCGAAAGCAGGGAAATTTTATGTGAAAGCACGTCTTCAATTAGCTGGCATAAACAATTCTGTATCCATGTTATCCTTGGATCGAATATCCACAAAATCATTGAAAATTTTTTCTAATAAAATGGATATATTTACAACGAATAGAAATTCTTCAATAGTGCATACTGGTCGTACACCTGTGAAACGTGCTTATCGTTCACCAGTGTTTCGGCATAAAATTGTCTTACCTCTACCATTGAATATAATTGATGCAATAAATAAACGATCAACATCACTTTTTGAATCCATGGAGTCCATTTCATCAATAGACTTAGAAGATGGTACAATACAAAATTATGAGCTTAAAATAGATTTGAAAGAACGTAATGCATGTAAAACAAATGATTTACATGTAACTTCTACTGTTCAAT ]
[+] EMBL CD128737 [ GCATAAAATTGTCTTACCTCTACCATTGCATATAATTGATGCAATAAATAAACGATCAACATCACTTTTTGAATCCATGGAGTCCATTTCATCAATAGACTTAGAAGATGGTACAATACGAAATTATGAGCTTAAAATAGATTTGAAAGAACGTATTGCATGTAAAACAAATGATTTACATGGAACTTCTACTGTTCAATATTTACCATATTGGAGTTCTTCACAACTAATTGGTAGTGTACGTATTCCTATAACATCTAAAATGTGGCAATATCTAATGGAAGATGTGAATAAATTACGTCGTTCTACAGTTGTGAACTTGGAAACCTTTCAAGATATGAAAACAAAAGAGAAATCATTAGAATTATTACCAAATAAATTGTTATGGTTTGTTAGGTGTCTGAAAGTTCCAGATGAAGATGCCAGTTCACGAGGGGAGATTACTTTTGGTATGCAGTATAATCAAGAGACTGGTAGTCTAACTATTAGCCTATTTAATTGTGCTGCAATGAATTTGCCTAAAAGAACAAAGAATTTATTTGTTCGTGCCTCATTGTGTTCAAATTGGAAATTATTTCGAACTGTTCAATCTAGACCAACTGCTCGACTTTCAGTGAATTCAGCAGA ]
[+] EMBL CD079443 [ TCAACATCACTTTTTGAATCCATGGAGTCCATTTCATCAATAGACTTAGAAGATGGTACAATACAAAATTATGAGCTTAAAATAGATTTGAAAGAACGTAATGCATGTAAAACAAATGATTTACATGGAACTTCTACTGTTCAATATTTACCATATTGGAGTTCTTCACAACTAATTGGTAGTGTACGTATTCCTATAACATCTAAAATGTGGCAATATCTAATGGAAGATGTGAATAAATTACGTCGTTCTACAGTTGTGAACTTGGAAACCTTTCAAGATATGAAAACAAAAGAGAAATCATTAGAATTATTACCAAATAAATTGTTATGGTTTGTTAGGTGTCTGAAAGTTCCAGATGAAAATGCCAGTTCACGAGGGGAGATTACTTTTGGTATGCAGTATAATCAAGAGACTGGTAGTCTAACTATTAGCCTATTTAATTGTGCTGCAATGAATTTGCCTAAAAGAACAAAGAATTTATTTGTTCGTGCCTCATTGTGTTCAAATTGGAAATTATTTCGAACTGTTCAATCTAGACCAACTGCTCGATTTTCAGTGAATTCAGCAGAGTTTATATTGGGTGAGAAATTAAATGTTATCATTGAAGAAGATATTAGTAGTGTATGTATAATACTGAGTGTGTTCGCACGATCTGGAAGTANACTANCAGAAGCTACTACACTTATTGGGTCGNTGTGTAACTGGACCATCAGATTTAGCTTTGCGTGATGGNACTTACATGGACATCAGTCTGTCTAGACAAGGCATGATAGACGACTCTATCTCTATAATGATACGNATCATGTGAATATGACTTTCATATATACTGACTGTCATGCTAATTGATTCTCTATAATATGATATTTCTACTGTGACTAAGTACACGATGTGCGTATATAATTGGAATTTGT]
[+] EMBL CD128318 [ GGAGTCCATTTCATCAATAGACTTAGAAGATGGTACAATACAAAATTATGAGCTTAAAATAGATTTGAAAGAACGTAATGCATGTAAAACAAACGATTTACATGGAACTTCTACTGTTCAATATTTACCATATTGGAGTTCTTCACAACTAATTGGTAGTGTACGTATTCCTATAACATCTAAAATGTGGCAATATCTAATGGAAGATGTGAATAAATTACGTCGTTCTACAGTTGTGAACTTGGAAACCTTTCAAGATATGAAAACAAAAGAGAAATCATTAGAATTATTACCAAATAAATTGTTATGGTTTGT ]
consensusID : consensus_7468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence
[AGGTGTCTGAAAGTTCCAGATGANAATGCCAGTTCACGAGGGGAGATTACTTTTGGTATGCAGTATAATCAAGAGACTGGTAGTCTAACTATTAGCCTATTTAATTGTGCTGCAATGAATTTGCCTAAAAGAACAAAGAATTTATTTGTTCGTGCCTCATTGTGTTCAAATTGGAAATTATTTCGAACTGTTCAATCTAGACCAACTGCTCGATTTTCAGTGAATTCAGCAGAGTTTATATTGGGTGAGAAATTAAATGTTATCATTGAAGAAGATATTAGTAGTGTATGTATAATACTGAGTGTGTTCGCACGATCTGGAAGTAAACTACAAGAAGCTACTACACTTATTGGTCGTAGTGTAACTGGACCATCAGATTTAGCTTGCGGTGATGGACTTTCACATTGGACATCAGTCTGTTCTAGACAAGGCATGATAAGACGTACTCATATTCTCTCATAAATGATTACAGTATCTATGTGAAATAGTGAACTTTTCATTTATATCAGCTGAACTGTTCAATGCTTAATTTGCATTTTCTTCTTATAATATAAATGAAATATTTTCTTTACTTGTTGACTAAGTATGTTTAACACTGAAATGTTGTCTGTTATTAATAGAATTATGGGATATTTTGATGTATACGTAAATAT]
[-] EMBL CD073713 [AGGTGTCTGAAAGTTCCAGATGANAATGCCAGTTCACGAGGGGAGATTACTTTTGGTATGCAGTATAATCAAGAGACTGGTAGTCTAACTATTAGCCTATTTAATTGTGCTGCAATGAATTTGCCTAAAAGAACAAAGAATTTATTTGTTCGTGCCTCATTGTGTTCAAATTGGAAATTATTTCGAACTGTTCAATCTAGACCAACTGCTCGATTTTCAGTGAATTCAGCAGAGTTTATATTGGGTGAGAAATTAAATGTTATCATTGAAGAAGATATTAGTAGTGTATGTATAATACTGAGTGTGTTCGCACGATCTGGAAGTAAACTACAAGAAGCTACTACACTTATTGGTCGTAGTGTAACTGGACCATCAGATTTAGCTTGCGGTGATGGACTTTCACATTGGACATCAGTCTGTTCTAGACAAGGCATGATAAGACGTACTCATATTCTCTCATAAATGATTACAGTATCTATGTGAAATAGTGAACTTTTCATTTATATCAGCTGAACTGTTCAATGCTTAATTTGCATTTTCTTCTTATAATATAAATGAAATATTTTCTTTACTTGTTGACTAAGTATGTTTAACACTGAAATGTTGTCTGTTATTAATAGAATTATGGGATATTTTGATGTATACGTAAATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7468#0 ACAACTGAACGCGGTATACCAGAAAGAGGTTACATTACCTTAGCTGTACGAATTGAAGGT 60
consensus_7468#1 ------------------------------------------------------------
consensus_7468#0 GATTTATCCAACATTAAAAAACATCCATTTCTATCTGTACATATATTTGATGCACGTTGT 120
consensus_7468#1 ------------------------------------------------------------
consensus_7468#0 ATTCTGAGTAGGAATGTAGAACCGAAAGCAGGGAAATTTTATGTGAAAGCACGTCTTCAA 180
consensus_7468#1 ------------------------------------------------------------
consensus_7468#0 TTAGCTGGCATAAACAATTCTGTATCCATGTTATCCTTGGATCGAATATCCACAAAATCA 240
consensus_7468#1 ------------------------------------------------------------
consensus_7468#0 TTGAAAATTTTTTCTAATAAAATGGATATATTTACAACGAATAGAAATTCTTCAATAGTG 300
consensus_7468#1 ------------------------------------------------------------
consensus_7468#0 CATACTGGTCGTACACCTGTGAAACGTGCTTATCGTTCACCAGTGTTTCGGCATAAAATT 360
consensus_7468#1 ------------------------------------------------------------
consensus_7468#0 GTCTTACCTCTACCATTGAATATAATTGATGCAATAAATAAACGATCAACATCACTTTTT 420
consensus_7468#1 ------------------------------------------------------------
consensus_7468#0 GAATCCATGGAGTCCATTTCATCAATAGACTTAGAAGATGGTACAATACAAAATTATGAG 480
consensus_7468#1 ------------------------------------------------------------
consensus_7468#0 CTTAAAATAGATTTGAAAGAACGTAATGCATGTAAAACAAATGATTTACATGGAACTTCT 540
consensus_7468#1 ------------------------------------------------------------
consensus_7468#0 ACTGTTCAATATTTACCATATTGGAGTTCTTCACAACTAATTGGTAGTGTACGTATTCCT 600
consensus_7468#1 ------------------------------------------------------------
consensus_7468#0 ATAACATCTAAAATGTGGCAATATCTAATGGAAGATGTGAATAAATTACGTCGTTCTACA 660
consensus_7468#1 ------------------------------------------------------------
consensus_7468#0 GTTGTGAACTTGGAAACCTTTCAAGATATGAAAACAAAAGAGAAATCATTAGAATTATTA 720
consensus_7468#1 ------------------------------------------------------------
consensus_7468#0 CCAAATAAATTGTTATGGTTTGTTAGGTGTCTGAAAGTTCCAGATGAAGATGCCAGTTCA 780
consensus_7468#1 ------------------------AGGTGTCTGAAAGTTCCAGATGANAATGCCAGTTCA 36
*********************** ***********
consensus_7468#0 CGAGGGGAGATTACTTTTGGTATGCAGTATAATCAAGAGACTGGTAGTCTAACTATTAGC 840
consensus_7468#1 CGAGGGGAGATTACTTTTGGTATGCAGTATAATCAAGAGACTGGTAGTCTAACTATTAGC 96
************************************************************
consensus_7468#0 CTATTTAATTGTGCTGCAATGAATTTGCCTAAAAGAACAAAGAATTTATTTGTTCGTGCC 900
consensus_7468#1 CTATTTAATTGTGCTGCAATGAATTTGCCTAAAAGAACAAAGAATTTATTTGTTCGTGCC 156
************************************************************
consensus_7468#0 TCATTGTGTTCAAATTGGAAATTATTTCGAACTGTTCAATCTAGACCAACTGCTCGACTT 960
consensus_7468#1 TCATTGTGTTCAAATTGGAAATTATTTCGAACTGTTCAATCTAGACCAACTGCTCGATTT 216
********************************************************* **
consensus_7468#0 TCAGTGAATTCAGCAGAGTTTATATTGGGTGAGAAATTAAATGTTATCATTGAAGAAGAT 1020
consensus_7468#1 TCAGTGAATTCAGCAGAGTTTATATTGGGTGAGAAATTAAATGTTATCATTGAAGAAGAT 276
************************************************************
consensus_7468#0 ATTAGTAGTGTATGTATAATACTGAGTGTGTTCGCACGATCTGGAAGTANACTANCAGAA 1080
consensus_7468#1 ATTAGTAGTGTATGTATAATACTGAGTGTGTTCGCACGATCTGGAAGTAAACTACAAGAA 336
************************************************* **** ****
consensus_7468#0 GCTACTACACTTATTGGGTCGNTGTGTAACTGGACCATCAGATTTAGCTTTGCGTGATGG 1140
consensus_7468#1 GCTACTACACTTATTGG-TCGTAGTGTAACTGGACCATCAGATTTAGCTTGCGGTGATGG 395
***************** *** *************************** *******
consensus_7468#0 NACTT-ACAT-GGACATCAGTCTGT-CTAGACAAGGCATGATA-GACG-ACTC----TAT 1191
consensus_7468#1 ACTTTCACATTGGACATCAGTCTGTTCTAGACAAGGCATGATAAGACGTACTCATATTCT 455
** **** ************** ***************** **** **** * *
consensus_7468#0 CTCTATAATGAT-AC-GNATC-ATGTGAA----TATGACTTTCATATATACTGACTGTCA 1244
consensus_7468#1 CTCATAAATGATTACAGTATCTATGTGAAATAGTGAACTTTTCATTTATATCAGCTGAAC 515
*** ****** ** * *** ******* * ****** **** ***
consensus_7468#0 TGCTAATTGATTCTCTATAATATGATATTTCTACTGTGACT-AAGTACACGATGTGCGTA 1303
consensus_7468#1 TGTTCAATGCTTAATTTGCATTTTCTTCTTATAATATAAATGAAATATTTTCTTTACTTG 575
** * * ** ** * ** * * ** ** * * * * ** ** * * * *
consensus_7468#0 TATAATTGGAATTTGT-------------------------------------------- 1319
consensus_7468#1 TTGACTAAGTATGTTTAACACTGAAATGTTGTCTGTTATTAATAGAATTATGGGATATTT 635
* * * * ** * *
consensus_7468#0 ------------------
consensus_7468#1 TGATGTATACGTAAATAT 653
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||