|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1433 fasta sequence
[CGGATGATTCGTCGGGTGGTGTGAAGTCCGAACAACCACCAACCGTGGCCAAACCAGCCACAACTACATCTCATTCATATGAACCTGAACAGAAAACTCCACCCAAATCCTCTACTGGTCCTTTCTCTGGTGGTCAGCCAAGTACTCCTGGAACACCAGGTTGTGGGCTCCCACGTGTATTTCCCATACAAAGCCTCAATCCGTATCAGAATAGATGGACTATACGTGCTCGTGTATCACAAAAGTCTGCTATCCGAACTTGGAGCAAACAAGGTCGTGATGGAAAGTTATTCAACTTTACGCTAGTTGATGAAAGCGGTGAAATTCGTGTAACTGGATTCAACGCTGAAGTGGATAAATTTTATGATATGATTGAGGTCAATAAAGTGTACTATGTCAGTCGAGCGAACTTGAAAGCCGCTAACAAACAATTCAATACAACTAATAATGATTACGAAATGACACTTCATAGCGATAGTCAAGTTTTGCCTTGTGAAGATTCTGATACTAGTTCTTTGCCAGAAACTCACTTCAATTTTATTTCAATAGGAAAGTNAGATACACAGTCTCCTGGATCTTTTGTCGATATTGTTGGAGTTGTTCATGAATGCGGTGAAGTACAATCAATTACTGCTAAAGCATCTCAACGTGAACTACGTAAACGTGAATTAGGATTAGTGGATAGTTCTAACTGTTTAGTACGTCTTACACTATGGGGCGAAGAAGCGGAAAATTTCGTTGGTGCGAGTCATCCCGTCATAGTTATAAAAGCAGCAAAATAATCTGATTTTAATGGTCGCTCTTTATCTGTAAGCCCAACATCATCCCTTCTCATTAGTCCTACAAATATTCCTGAAGCTATACGACTAAAAGGTTGGTATGAACATGAAGGTCGCTTCTCTAACTTTGAAACCTTCCGTAGTTAAATGGTTGGATCTTCAGGAGGAGCAGATGGTGTATCTAGTTCATCTGGTGTTCTTGGCGGTTGGAATCTTTTACAAGATGTTAAAGCATCTGGTGTAGGAGCTAATGTAAAAGCAGATTATTTCACTTGTAAAGCCACTGTTGTATTCATGAAAAAGGAGAATTTCATGTATCAAGCTTGTTCTACTGAAGGGTGCAATAAAAAGGTTATTGATTTAGGAAATGGGTTATATCGATGTGAAAAATGTGCTCGGGAAACACCTGATTGTAAATGGCGCTTGCTTCTTATGGCCAAAATCGCTGACATCACTGGAGATTTATGGGTTACATGTTTCCAAGATGCTGCTGAAGTTTTACTGGGACAGACAGCTGANAAGTTAGGCACTATAAAATCAACACAAGATGAAACGCAGTTGGAAAAAGTTTTCATCGAGTCAGCATTCAACTCATGGATATTTCGTTTACGAGCTANAGTTGATCGTTATAATGATGAAGAAACGTTACGTGTT]
[+] EMBL CD133201 [CGGATGATTCGTCGGGTGGTGTGAAGTCCGAACAACCACCAACCGTGGCCAAACCAGCCACAACTACATCTCATTCATATGAACCTGAACAGAAAACTCCACCCAAATCCTCTACTGGTCCTTTCTCTGGTGGTCAGCCAAGTACTCCTGGAACACCAGGTTGTGGGCTCCCACGTGTATTTCCCATACAAAGCCTCAATCCGTATCAGAATAGATGGACTATACGTGCTCGTGTATCACAAAAGTCTGCTATCCGAACTTGGAGCAAACAAGGTCGTGATGGAAAGTTATTCAACTTTACGCTAGTTGATGAAAGCGGTGAAATTCGTGTAACTGGATTCAACGCTGAAGTGGATAAATTTTATGATATGATTGAGGTCAATAAAGTGTACTATGTCAGTCGAGCGAACTTGAAAGCCGCTAACAAACAATTCAATACAACTAATAATGATTACGAAATGACACTTCATAGCGATAGTCAAGTTTTGCCTTGTGAAGATTCTGATAC ]
[-] EMBL CD068859 [ TGTGGGCTCCCACGTGTATTTCCCATACAAAGCCTCAATCCGTATCAGAATAGATGGACTATACGTGCTCGTGTATCACAAAAGTCTGCTATCCGAACTTGGAGCAAACAAGATCGTGATGGAAAGTTATTCAACTTTACGCTAGTTGATGAAAGCGGTGAAATTCGTGTAACTGGATTCAACGCTGAAGTGGATAAATTTTATGATATGATTGAGGTCAATAAAGTGTACTATGTCAGTCGAGCGAACTTGAAAGCCGCTAACAAACAATTCAATACAACTAATAATGATTACGAAATGACACTTCATAGCGATAGTCAAGTTTTGCCTTGT AAGATTCTGATACT ]
[-] EMBL CD125890 [ AACAAACAATTCAATACAACTAATAATGATTACGAAATGACACTTCATAGCGATAGTCAAGTTTTGCCTTGTGAAGATTCTGATACTAGTTCTTTGCCAGAAACTCACTTCAATTTTATTTCAATAGGAAAGTNAGATACACAGTCTCCTGGATCTTTTGTCGATATTGTTGGAGTTGTTCATGAATGCGGTGAAGTACAATCAATTACTGCTAAAGCATCTCAACGTGAACTACGTAAACGTGAATTAGGATTAGTGGATAGTTCTAACTGTTTAGTACGTCTTACACTATGGGGCGAAGAAGCGGAAAATTTCGTTGGTGCGAGTCATCCCGTCATAGTTATAAAAGCAGCAAAATA ]
[+] EMBL CD079885 [ gAGGGGAAAATTTCGTTGGTGCGAGTCATCCCGTCATAGTTATAAAAGCAGCAAAAATATCTGATTTTAATGGTCGCTCTTTATCTGTAAGCCCAACATCATCCCTTCTCATTAGTCCTACAAATATTCCTGAAGCTATACGACTAAAAGGTTGGTATGAACATGAAGGTCGCTTCTCTAACTTTGAAACCTTCCGTAGTTAAATGGTTGGATCTTCAGGAGGAGCAGATGGTGTATCTAGTTCATCTGGTGTTCTTGGCGGTTGGAATCTTTTACAAGATGTTAAAGCATCTGGTGTAGGAGCTAATGTAAAAGCAGATTATTTCACTTGTAAAGCCACTGTTGTATTCATGAAAAAGGAGAATTTCATGTATCAAGCTTGTTCTACTGAAGGGTGCAATAAAAAGGTTATTGATTTAGGAAATGGGTTATATCGATGTGAAAAATGTGCTCGGGAAACACCTGATTGTAAATGGCGCTTGCTTCTTATGGCCAAAATCGCTGACATCACTGGAGATTTATGGGTTACATGTTTCCAAGATGCTGCTGAAGTTTTACTGGGACAGACAGCTGANAAGTTAGGCACTATAAAATCAACACAAGATGAAACGCAGTTGGAAAAAGTTTTCATCGAGTCAGCATTCAACTCATGGATATTTCGTTTACGAGCTANAGTTGATCGTTATAATGATGAAGAAACGTTACGTGTT]
consensusID : consensus_7471#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence
[GTAGGACTAATGAGAAGGGATGATGTTGGGCTTACAGATAAAGAGCGACCTGAAAATAAAAGTTATACTAAGAAGAATACCACATTAGGTTATTTAAGACGTTGACTAACCAATAGTCAGTATCAATAAAACTTTTAATCTATTGTGTTATAGGTCCTTAAGACAGGCTGTAATGAACTGCTTATCGTTGGGTGGTTGGGGGTAGTAAGCGACAAGAAACGCTGCTTGACCTAGGTTGGCAGCTAGTTGGCACTCATCAATAAAGCGTACCACTAATCTCTAAAACACTGATAGCTTCTAGTGGATTCGAACCCGGATCGTTAAGTTTCATAGAGACGTTACCACTGTCAACTACTTCCAATCATTCAACAAAGGTACACGGCACGCGATGCTGAGTCACTTATACTAGTGACCACATTGCAACTTGGTCGATAGAATTCAGTCGACTCTAAGAACTAGACAAACATGATACCGACCAATTAATTTAAACGGCTCCCCTTTGTGAATATTTTAGAGTTACAGGTTTGGGGACAAGTAATATATGCTACAAGGTAAGATATGTCCAAAACA]
[+] EMBL CD146459 [GTAGGACTAATGAGAAGGGATGATGTTGGGCTTACAGATAAAGAGCGACCTGAAAATAAAAGTTATACTAAGAAGAATACCACATTAGGTTATTTAAGACGTTGACTAACCAATAGTCAGTATCAATAAAACTTTTAATCTATTGTGTTATAGGTCCTTAAGACAGGCTGTAATGAACTGCTTATCGTTGGGTGGTTGGGGGTAGTAAGCGACAAGAAACGCTGCTTGACCTAGGTTGGCAGCTAGTTGGCACTCATCAATAAAGCGTACCACTAATCTCTAAAACACTGATAGCTTCTAGTGGATTCGAACCCGGATCGTTAAGTTTCATAGAGACGTTACCACTGTCAACTACTTCCAATCATTCAACAAAGGTACACGGCACGCGATGCTGAGTCACTTATACTAGTGACCACATTGCAACTTGGTCGATAGAATTCAGTCGACTCTAAGAACTAGACAAACATGATACCGACCAATTAATTTAAACGGCTCCCCTTTGTGAATATTTTAGAGTTACAGGTTTGGGGACAAGTAATATATGCTACAAGGTAAGATATGTCCAAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7471#0 CGGATGATTCGTCGGGTGGTGTGAAGTCCGAACAACCACCAACCGTGGCCAAACCAGCCA 60
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 CAACTACATCTCATTCATATGAACCTGAACAGAAAACTCCACCCAAATCCTCTACTGGTC 120
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 CTTTCTCTGGTGGTCAGCCAAGTACTCCTGGAACACCAGGTTGTGGGCTCCCACGTGTAT 180
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 TTCCCATACAAAGCCTCAATCCGTATCAGAATAGATGGACTATACGTGCTCGTGTATCAC 240
consensus_7471#1 ---------------GTAGGACTAATGAGAAGGGATGATGT---TGGGCTTACAGATAAA 42
* * ** **** **** * * *** ** *
consensus_7471#0 AAAAGTCTGCTATCCGAACTTGGAGCAAACAAGGTCGTGATGGAAAGTTATTCAACTTTA 300
consensus_7471#1 GAGCGACCTGAAAATAAAAGTTATACTAAGAAGAATACCACATTAGGTTATTTAA---GA 99
* * * * ** * * ** *** * * ****** ** *
consensus_7471#0 CGCTAGTTGATGAAAGCGGTGAAATTCGTGTAACTGGATTCAACGCTGAAGTGG-ATAAA 359
consensus_7471#1 CGTTGACTAACCAATA-GTCAGTATCAATAAAACT---TTTAAT-CTATTGTGTTATAGG 154
** * * * ** * ** * **** ** ** ** *** ***
consensus_7471#0 TTTTATGATATGATTGAGGTCAATAAAGTGTACTATGTCAGTCGAGCGAACTTGAAAGCC 419
consensus_7471#1 TCCT----TAAGACAGGCTGTAATGAACTGCTTATCGTTGGGTGGTTGGG---GGTAGTA 207
* * ** ** * *** ** ** ** * * * * **
consensus_7471#0 GCTAACAAACAATTCAATACAACTAATAATGATTACGAAATGACACTTCATAGCGATAGT 479
consensus_7471#1 AGCGACAAGAAACGCTGCTTGACCTAGGTTGGCAGCTAGTTGGCACT-CATCAATAAAGC 266
**** ** * ** * ** * * ** **** *** * **
consensus_7471#0 CAAGTTTTGCCTTGTGAAGATTCTGATACTAGTTCTTTGCCAGAAACTCACTTCAATTTT 539
consensus_7471#1 GTACCACTAATCTCTAAA-ACACTGATAGCTTCTAGTGGATTCGAACCCGGATCG--TTA 323
* * * * ** * ****** * * * *** * ** **
consensus_7471#0 ATTTCAATAGGAAAGTNAGATACACAGTCTCCTGGATCTTTTGTCGATATTGTTGGAGTT 599
consensus_7471#1 AGTTTCATAGAGACGTTAC---CACTGTCAACTA---CTTCCAATCAT-TCAACAAAGGT 376
* ** **** * ** * *** *** ** *** ** * ** *
consensus_7471#0 GTTCATGAATGCGGTGAAGTACAATCAATTACTGCTAAAGCATCTCAACGTGAACTACGT 659
consensus_7471#1 ACACG-GCACGCGATGCTGAGTCACTTATACTAGTGACCACATTGCAACTTGGTCGA--T 433
* * * *** ** * * ** * * *** **** ** * * *
consensus_7471#0 AAACGTGAATTAGGATTAGTGGATAGTTCTAACTGTTTAGTACGTCTTACACTATGGGGC 719
consensus_7471#1 AGAATTCAGTCGACTCTAAGAACTAGACAAACATGATACCGACCAATTAATTTAAACGGC 493
* * * * * ** *** * ** * ** *** ** ***
consensus_7471#0 GAAGAAGCG-GAAAATTTCGTTGGTGCGAGTCATCCCGTCATAGTTATAAAAGCAGCAAA 778
consensus_7471#1 TCCCCTTTGTGAATATTTTAGAGTTACAGGTT-TGGGGACA-AGTAATATATGCTACAAG 551
* *** **** * * * ** * * ** *** *** * ** ***
consensus_7471#0 ATAATCTGATTTTAATGGTCGCTCTTTATCTGTAAGCCCAACATCATCCCTTCTCATTAG 838
consensus_7471#1 GTAAGATATGTCCAAAACA----------------------------------------- 570
*** * * **
consensus_7471#0 TCCTACAAATATTCCTGAAGCTATACGACTAAAAGGTTGGTATGAACATGAAGGTCGCTT 898
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 CTCTAACTTTGAAACCTTCCGTAGTTAAATGGTTGGATCTTCAGGAGGAGCAGATGGTGT 958
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 ATCTAGTTCATCTGGTGTTCTTGGCGGTTGGAATCTTTTACAAGATGTTAAAGCATCTGG 1018
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 TGTAGGAGCTAATGTAAAAGCAGATTATTTCACTTGTAAAGCCACTGTTGTATTCATGAA 1078
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 AAAGGAGAATTTCATGTATCAAGCTTGTTCTACTGAAGGGTGCAATAAAAAGGTTATTGA 1138
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 TTTAGGAAATGGGTTATATCGATGTGAAAAATGTGCTCGGGAAACACCTGATTGTAAATG 1198
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 GCGCTTGCTTCTTATGGCCAAAATCGCTGACATCACTGGAGATTTATGGGTTACATGTTT 1258
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 CCAAGATGCTGCTGAAGTTTTACTGGGACAGACAGCTGANAAGTTAGGCACTATAAAATC 1318
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 AACACAAGATGAAACGCAGTTGGAAAAAGTTTTCATCGAGTCAGCATTCAACTCATGGAT 1378
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 ATTTCGTTTACGAGCTANAGTTGATCGTTATAATGATGAAGAAACGTTACGTGTT 1433
consensus_7471#1 -------------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||