cluster # 7491

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Schistosoma mansoni
cluster # 7491 cluster # 7491 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7491#0 length = 603 sequences # 1

consensus_7491#1 length = 579 sequences # 2
consensus_7491#2 length = 535 sequences # 2

consensusID : consensus_7491#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [AAAGCCAATAGGTAGGTGGTGAATGGGCTTTTGTGACTGGTGCATCATCAGGTCTTGGTGAAGCATATGCAGAAGAATTGGCCAAAGAGAGTCTCAATATCATGCTTATCAGTAATGATGAAGAACAACTGTCCTGCGTTGCCAATCGAATTGCAAATATCTATAATGTTCAAACAAGATTTGTGGTTGCAGATTTTACTAAAAATGATGTTTATGAAATAATCAAACCTGCTGTTGAACAATTATCCACAATTGCTTGTTTAGTGAATAATGTTGGTATGGGATTACCCATTGAGTTGTTTACTGGAGAAGTGAATTCACCAAATGAAGAATCAATTCAAAACATCATTCATTGTAATATTTTGTCTACAGTAACAATGACAAGTATCATTCTGCCGAAAATGTTAACACAGAAAGAACCTTATCCTGGTATTATCAATCTTGGATCTTATACAGGTTTCAAAGTATTTCCTTATGTTTCATTGTACGCTTCAACCAAAGCAGCTATTATTCATTTTTCTAGATGTCTAGCTGCAGAAATGTATCAAAAGAATTTCATTATACAAATTATGAATCCATTATTTGTATCAACAAATTTGACCC]

[+] EMBL CD127901             [AAAGCCAATAGGTAGGTGGTGAATGGGCTTTTGTGACTGGTGCATCATCAGGTCTTGGTGAAGCATATGCAGAAGAATTGGCCAAAGAGAGTCTCAATATCATGCTTATCAGTAATGATGAAGAACAACTGTCCTGCGTTGCCAATCGAATTGCAAATATCTATAATGTTCAAACAAGATTTGTGGTTGCAGATTTTACTAAAAATGATGTTTATGAAATAATCAAACCTGCTGTTGAACAATTATCCACAATTGCTTGTTTAGTGAATAATGTTGGTATGGGATTACCCATTGAGTTGTTTACTGGAGAAGTGAATTCACCAAATGAAGAATCAATTCAAAACATCATTCATTGTAATATTTTGTCTACAGTAACAATGACAAGTATCATTCTGCCGAAAATGTTAACACAGAAAGAACCTTATCCTGGTATTATCAATCTTGGATCTTATACAGGTTTCAAAGTATTTCCTTATGTTTCATTGTACGCTTCAACCAAAGCAGCTATTATTCATTTTTCTAGATGTCTAGCTGCAGAAATGTATCAAAAGAATTTCATTATACAAATTATGAATCCATTATTTGTATCAACAAATTTGACCC]




>consensus_7491#0
AAAGCCAATAGGTAGGTGGTGAATGGGCTTTTGTGACTGGTGCATCATCAGGTCTTGGTG
AAGCATATGCAGAAGAATTGGCCAAAGAGAGTCTCAATATCATGCTTATCAGTAATGATG
AAGAACAACTGTCCTGCGTTGCCAATCGAATTGCAAATATCTATAATGTTCAAACAAGAT
TTGTGGTTGCAGATTTTACTAAAAATGATGTTTATGAAATAATCAAACCTGCTGTTGAAC
AATTATCCACAATTGCTTGTTTAGTGAATAATGTTGGTATGGGATTACCCATTGAGTTGT
TTACTGGAGAAGTGAATTCACCAAATGAAGAATCAATTCAAAACATCATTCATTGTAATA
TTTTGTCTACAGTAACAATGACAAGTATCATTCTGCCGAAAATGTTAACACAGAAAGAAC
CTTATCCTGGTATTATCAATCTTGGATCTTATACAGGTTTCAAAGTATTTCCTTATGTTT
CATTGTACGCTTCAACCAAAGCAGCTATTATTCATTTTTCTAGATGTCTAGCTGCAGAAA
TGTATCAAAAGAATTTCATTATACAAATTATGAATCCATTATTTGTATCAACAAATTTGA
CCC

consensusID : consensus_7491#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 579
fasta sequence

                              [TACCCGTTACGTTGTNTGGTGGAGAAATTAATTCACCGAATGAAGAATCAATTAGAAATATCATTCATTGTAATATTTTGTCTACAGTAACAATGACAAGTATAATTCTGCCGAAAATGTTAACACAGAAAGAACCTAATCCTGGTATCATAAACATTGCATCTTATTCAGGTTTAAAAGTGTTTCCTTATGCTTCATTGTACGCTTCAACCAAAGCAGCTATTATTCAATTTTCGGGATGTGTGGCTGCAGAGAAGTATAAGAAGAATGTTATCATACAAGCGATATGTCCATTATTTGTGTCGACAAATATGACCAATCTAATGAAAACCACATTTTTCATACCAACTGCTAAAGTATATGCTAAAAGTGCATTAGATATGTATGGTGTTGAACAACAAACTTCTGGTTATTTTCGGCATGAGTTAAAAGCATATCTTTACAGTTTGTTGCCAACATCAGTTTTTATA-AGAATTATAAGATTAGTAGCTAATTCTCACACTATAGAGAGTCTCTAGATACATTTAATCTAAATCTCTCAGAGTGTGCGCGAAAATCTCTAATAGCGTGGTGAGAATA]

[-] EMBL CD165423             [TACCCGTTACGTTGTNTGGTGGAGAAATTAATTCACCGAATGAAGAATCAATTAGAAATATCATTCATTGTAATATTTTGTCTACAGTAACAATGACAAGTATAATTCTGCCGAAAATGTTAACACAGAAAGAACCTAATCCTGGTATCATAAACATTGCATCTTATTCAGGTTTAAAAGTGTTTCCTTATGCTTCATTGTACGCTTCAACCAAAGCAGCTATTATTCAATTTTCGGGATGTGTGGCTGCAGAGAAGTATAAGAAGAATGTTATCATACAAGCGATATGTCCATTATTTGTGTCGACAAATATGACCAATCTAATGAAAACCACATTTTTCATACCAACTGCTAAAGTATATGCTAAAAGTGCATTAGATATGTATGGTGTTGAACAACAAACTTCTGGTTATTTTCGGCATGAGTTAAAAGCATATCTTTACAGTTTGTTGCCAACATCAGTTTTTATA AGAATTATAAGATTAGTAGCTAAT                                                                                     ]
[+] EMBL AW497741             [                                                                                                                                                                                                                                                                                                                                              ATTTTTCATACCAACTGCTAAAGTGTATGCTAAAAATGCATTAGATATGTATGGTGTTGAACAACAAACTTCTGGTTATTTTCGGCATGAGTTTAAAGCATATCTTTACAGTTTGTTGGCAACATCAGGTTTTATATAGAATTATTAGATTAGTAGCTAAATCTCACACTATAGAGAGTCTCTAGATACATTTAATCTAAATCTCTCAGAGTGTGCGCGAAAATCTCTAATAGCGTGGTGAGAATA]




>consensus_7491#1
TACCCGTTACGTTGTNTGGTGGAGAAATTAATTCACCGAATGAAGAATCAATTAGAAATA
TCATTCATTGTAATATTTTGTCTACAGTAACAATGACAAGTATAATTCTGCCGAAAATGT
TAACACAGAAAGAACCTAATCCTGGTATCATAAACATTGCATCTTATTCAGGTTTAAAAG
TGTTTCCTTATGCTTCATTGTACGCTTCAACCAAAGCAGCTATTATTCAATTTTCGGGAT
GTGTGGCTGCAGAGAAGTATAAGAAGAATGTTATCATACAAGCGATATGTCCATTATTTG
TGTCGACAAATATGACCAATCTAATGAAAACCACATTTTTCATACCAACTGCTAAAGTAT
ATGCTAAAAGTGCATTAGATATGTATGGTGTTGAACAACAAACTTCTGGTTATTTTCGGC
ATGAGTTAAAAGCATATCTTTACAGTTTGTTGCCAACATCAGTTTTTATAAGAATTATAA
GATTAGTAGCTAATTCTCACACTATAGAGAGTCTCTAGATACATTTAATCTAAATCTCTC
AGAGTGTGCGCGAAAATCTCTAATAGCGTGGTGAGAATA

consensusID : consensus_7491#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 535
fasta sequence

                              [AATGACAAGCATCATTCTGCCGAGAATGTTAACACAGAAAGAACCTAATCCTTGTATTATCAATATTGCATCATATTCAGCTTTAAGAGTAACACCTTATTTAACTGTATATTCATCAACAAAATCAGCTATTATACAATTTTCCAAATGTTTAGCTGCAGAAAAATATCAAAAAAATATTAACATACAAACACTTTGTCCATTAACTATTTATACAAGCATGACAAAGAATGAGAAACCATCATTCTTTAATCCTACAGCAAAACTGTACGCTAAATGTGCATTAGATATGTATGGTGTTGAACAACAATCAACAGGGTATATACATCATGAATTAAAAGCTTATTTATTTAATTTATTACCAACATTTCTATGGATATTCATAACTTATACTAGAGTGAAATCACGTAAGAAGAATCTATAATGAATAAGATAGATGGATAGATCTATCATATTCAACATACATTCAAAATGTGATTTCTTATAGTGAATATGAAAAACACACACAAAAAAAGGAACGTTTCTTTTTTTTAAA]

[-] EMBL CD077317             [AATGACAAGCATCATTCTGCCGAGAATGTTAACACAGAAAGAACCTAATCCTTGTATTATCAATATTGCATCATATTCAGCTTTAAGAGTAACACCTTATTTAACTGTATATTCATCAACAAAATCAGCTATTATACAATTTTCCAAATGTTTAGCTGCAGAAAAATATCAAAAAAATATTAACATACAAACACTTTGTCCATTAACTATTTATACAAGCATGACAAAGAATGAGAAACCATCATTCTTTAATCCTACAGCAAAACTGTACGCTAAATGTGCATTAGATATGTATGGTGTTGAACAACAATCAACAGGGTATATACATCATGAATTAAAAGCTTATTTATTTAATTTATTACCAACATTTCTATGGATATTCATAACTTATACTAGAGTGAAATCACGTAAGAAGAATCTATAATGAATAAGATAGATGGATAGATCTATCATATTCAACATACATTCAAAATGTGATTTCTTATAGTGAATATGAAAAACACACACAAAAAAAGGAACGTTTCTTTTTTTTAAA]
[-] EMBL CD077257             [                                                                                                                                                                                                       CCATTAACTATTTATACAAGCATGTCAAAGAATGAGAAGCCATCATTCTTTAATCTTACAGCAAAACTGTACGCTAAATGTGCATTAGATATGTATGGTGTTGAACAACAATCAACAGGGTATAGACATCATGAATTAAAAGCTTATTTATTTAATTTATTACCAACATTTTTATGGATATTCATAACTTATACTAGAGTGAAATCACGTAAGAAGAATCTATAATGAATAAGATAGATGGATAGATTTATCATATTCCACATACATTCAAAATGTGATTTGTTATAGTGAATATGAAAAACACACACAAAAAAAGGAACGTTTCTTTTTTTTAAA]




>consensus_7491#2
AATGACAAGCATCATTCTGCCGAGAATGTTAACACAGAAAGAACCTAATCCTTGTATTAT
CAATATTGCATCATATTCAGCTTTAAGAGTAACACCTTATTTAACTGTATATTCATCAAC
AAAATCAGCTATTATACAATTTTCCAAATGTTTAGCTGCAGAAAAATATCAAAAAAATAT
TAACATACAAACACTTTGTCCATTAACTATTTATACAAGCATGACAAAGAATGAGAAACC
ATCATTCTTTAATCCTACAGCAAAACTGTACGCTAAATGTGCATTAGATATGTATGGTGT
TGAACAACAATCAACAGGGTATATACATCATGAATTAAAAGCTTATTTATTTAATTTATT
ACCAACATTTCTATGGATATTCATAACTTATACTAGAGTGAAATCACGTAAGAAGAATCT
ATAATGAATAAGATAGATGGATAGATCTATCATATTCAACATACATTCAAAATGTGATTT
CTTATAGTGAATATGAAAAACACACACAAAAAAAGGAACGTTTCTTTTTTTTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7491#1      TACCCGTTACGTTGTNTGGTGGAGAAATTAATTCACCGAATGAAGAATCAATTAGAAATA 60
consensus_7491#2      ------------------------------------------------------------
consensus_7491#0      ---AAAGCCAATAGGTAGGTGGTGAATGGGCTTTTGTGACTGGTGCATCATCAGGTCTTG 57
                                                                                  

consensus_7491#1      TCATTCATTGTAATATTTTGTCTACAGTAACAATGACAAGTATAATTCT-GCCGAAAATG 119
consensus_7491#2      -------------------------------AATGACAAGCATCATTCT-GCCGAGAATG 28
consensus_7491#0      GTGAAGCATATGCAGAAGAATTGGCCAAAGAGAGTCTCAATATCATGCTTATCAGTAATG 117
                                                      *     *  ** ** **   *   ****

consensus_7491#1      TTAACACAGAAAGAACCTAATCC-----TGGTATCATAAACATTGCATCTTATTCA---- 170
consensus_7491#2      TTAACACAGAAAGAACCTAATCC-----TTGTATTATCAATATTGCATCATATTCA---- 79
consensus_7491#0      ATGAAGAACAACTGTCCTGCGTTGCCAATCGAATTGCAAATATC-TATAATGTTCAAACA 176
                       * *   * **    ***          * * **    ** **   **  * ****    

consensus_7491#1      -GGTTTAAAAGTG-TTTCCTTATGCTTCATTGTACGCTT----CAACCAAAGCAGCTATT 224
consensus_7491#2      -GCTTTAAGAGTA-ACACCTTATTTAACTGTATATTCAT----CAACAAAATCAGCTATT 133
consensus_7491#0      AGATTTGTGGTTGCAGATTTTACTAAAAATGATGTTTATGAAATAATCAAACCTGCTGTT 236
                       * ***     *       ***          *     *     **  *** * *** **

consensus_7491#1      ATTCAATTTTCGGGA--TGTGTGGCTGCAGAGAAGTATAAGAAGAATGTTATCATACAAG 282
consensus_7491#2      ATACAATTTTCCAAA--TGTTTAGCTGCAGAAAAATATCAAAAAAATATTAACATACAAA 191
consensus_7491#0      GAACAATTATCCACAATTGCTTGTTTAGTGAATAATGTTGGTATGGGATTACCCATTGAG 296
                         ***** **   *  **  *   *   **  * * *    *     *** *     * 

consensus_7491#1      CGATATGTCCATTATTTGTGTCGACAAATATGACCAATCTAATGAAAACCACATTTTTCA 342
consensus_7491#2      CACTTTGTCCATTAACTATTTATACAAGCATGACAAAGAATGAGAAACCATCATTCTTTA 251
consensus_7491#0      TTGTTTACTGGAGAAGTGAATTCACCAA-ATGAAGAATCAATTCAAAACATCATTCATTG 355
                         * *       *  *   *  ** *  ****  **       *** *  ****  *  

consensus_7491#1      TA--------CCAACTGCTAAAGTATATGCTAAAAGTGCATTAGATATGTATGGTGTTGA 394
consensus_7491#2      AT--------CCTACAGCAAAACTGTACGCTAAATGTGCATTAGATATGTATGGTGTTGA 303
consensus_7491#0      TAATATTTTGTCTACAGTAACAATGACAAGTATCATTCTGCCGAAAATGT-TAACACAGA 414
                                 * ** *  * * *      **    *       * **** *      **

consensus_7491#1      ACAACAAACTTCTGGTTAT-TTTCGGCATGAGTTAAAAGCATATCTTTACAGTTTGTTGC 453
consensus_7491#2      ACAACAATCAACAGGGTAT-ATACATCATGAATTAAAAGCTTATTTATTTAATTTATTAC 362
consensus_7491#0      AAGAACCTTATCCTGGTATTATCAATCTTGGATCTTATACAGGTTT---CAAAGTATTTC 471
                      *  *       *  * ***  *    * **  *   *  *   * *    *   * ** *

consensus_7491#1      CAACATCAGTTTTTATAAGAATTA-TAAGATTAGTAGCTAATTCTCACA--------CTA 504
consensus_7491#2      CAACATTTCTATGGATATTCATAACTTATACTAG-AGTGAAATCACGTAAGAAGAATCTA 421
consensus_7491#0      CT-TATGTTTCATTGTACGCTTCAACCAAAGCAGCTATTA-TTCATTTTTC-----TAGA 524
                      *   **   *     **    * *   * *  **     *  **               *

consensus_7491#1      TAGAGAGTCTC-TAGATACATTTAATCTAAATCTCTCAGAGTGTGCGCGAAA----ATCT 559
consensus_7491#2      TAATGAATAAGATAGATGGATA-GATCTATCATATTCAACATACATTCAAAATGTGATTT 480
consensus_7491#0      TGTCTAGCTGCAGAAATGTATCAAAAGAATTTCATTATACAAATTATGAATCCATTATTT 584
                      *    *       * **  **   *   *      *             *      ** *

consensus_7491#1      CTAATAGCG--TGGTGAGAATA--------------------------------- 579
consensus_7491#2      CTTATAGTGAATATGAAAAACACACACAAAAAAAGGAACGTTTCTTTTTTTTAAA 535
consensus_7491#0      GTATCAACAAATTTGACCC------------------------------------ 603
                       *   *     *