cluster # 7509

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Schistosoma mansoni
cluster # 7509 cluster # 7509 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7509#0 length = 630 sequences # 4

consensus_7509#1 length = 177 sequences # 1

consensusID : consensus_7509#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 630
fasta sequence

                              [GCTCTAAACCAAAAATTCTGGATGCAAAGTCGTTCTCTACCTCTAAATCAAGTAGTGACAATGTCAGACATAATTCGACAAAAAAACCAGTATCAAGTAATGTATTGTGCGACAGTAAAGGTTCAACCTCTGAATCTAAACTGAAATCTATCAGAGATTCAAAGGGTGAGAGTCGTGACATCATAGCGGACGACAATAAACAACAAGGTCGGTCGTCGAAACCAGATACTTCATCTAACAATTCTACTTTGTTGAAAAATGATAGTAGTCGCAAAAAAGAAATGTCTCCATCTACACATACACGAAAACGCCGTTACTCAAAAACAGATAGCGATGATAAAGAAGCGATTCCTTCAAAACAGAGTCGACCGAGCTTAACATCATCTGGTGATTCATCTGTTGTAGGCGAAGCATTGGCAGCTTATAAAAAGAACCATACGGGGACACAACATCATCGTTCGGATCACCGTAGACGTTCGTCCAGCAATCGTCCTAGCTCTCCAAACCATCGAAGTAGCTTTAAGAGTAGTTTTCCAGAAGGACCTCGTGTCAAAGACAAAACGGATTCCATTTCGCATTCTCGTGACAGCGGCCGACGTCGTTCACGTTCATTTAACCAAAGACATCGTT]

[-] EMBL CD158900             [GCTCTAAACCAAAAATTCTGGATGCAAAGTCGTTCTCTACCTCTAAATCAAGTAGTGACAATGTCAGACATAATTCGACAAAAAAACCAGTATCAAGTAATGTATTGTGCGACAGTAAAGGTTCAACCTCTGAATCTAAACTGAAATCTATCAGAGATTCAAAGGGTGAGAGTCGTGACATCATAGCGGACGGCAATAAACAACAAGGTCGGTCGTCGAAACCAGATACTTCATCTAACAATTCTACTTTGTTGAAA                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD154885             [                                  CTCTACCTCTAAATCAAGTAGTGACAATGTCAGACATAATTCGACAAAAAAACCAGTATCAAGTAATGTATTGTGCGACAGTAAAGGTTCAACCTCTGAATCTAAACTGAAATCTATCAGAGATTCAAAGGGTGAGAGTCGTGACATCATAGCGGACGACAATAAACAACAAGGTCGGTCGTCGAAACCCGAAACTTCATCTAACAATTCTACTTTGTTGAAAAATGATAGTAGTCGCAAAAAAGAAATGTCTCCATCTACACATACACGAAAACGCCGTTACTCAAAAACAGATAGCGATGATAAAGAAGCGATTCCTTCAAAACAGAGTCGACCGAGCTTAACATCATCTGGTGATTCATCTGTT                                                                                                                                                                                                                                     ]
[+] EMBL CD190437             [                                                                                                                  GTAAAGGTTCAACCTCTGAATCTAAACTGAAATCTATCAGAGATTCAAAGGGTGAGAGTCGTGACATCATAGCGGACGACAATAAACAACAAGGTCGGTCGTCGAAACCAGATACTTCATCTAACAATTCTACTTTGTTGAAAAATGATAGTAGTCGCAAAAAAGAAATGTCTCCATCTACACATACACGAAAACGCCGTTACTCAAAAACAGATAGCGATGATAAAGAAGCGATTCCTTCAAAACAGAGTCGACCGAGCTTAACATCATCTGGTGATTCATCTGTTGTAGGCGAAGCATTGGCAGCTTATAAAAAGAACCATACGGGGACACAACATCATCGTTCGGATCACCGTAGACGTTCGTCCAGCAATCGTCCTAGCTCTC                                                                                                                                 ]
[+] EMBL CD170916             [                                                                                                                                                                                                                                                                                        AATGTCTCCATCTACACATACACGAAAACGCCGTTACTCAAAAACAGATAGCGATGATAAAGAAGCGATTCCTTCAAAACAGAGTCGACCGAGCTTAACATCATCTGGTGATTCATCTGTTGTAGGCGAAGCATTGGCAGCTTATAAAAAGAACCATACGGGGACACAACATCATCGTTCGGATCACCGTAGACGTTCGTCCAGCAATCGTCCTAGCTCTCCAAACCATCGAAGTAGCTTTAAGAGTAGTTTTCCAGAAGGACCTCGTGTCAAAGACAAAACGGATTCCATTTCGCATTCTCGTGACAGCGGCCGACGTCGTTCACGTTCATTTAACCAAAGACATCGTT]




>consensus_7509#0
GCTCTAAACCAAAAATTCTGGATGCAAAGTCGTTCTCTACCTCTAAATCAAGTAGTGACA
ATGTCAGACATAATTCGACAAAAAAACCAGTATCAAGTAATGTATTGTGCGACAGTAAAG
GTTCAACCTCTGAATCTAAACTGAAATCTATCAGAGATTCAAAGGGTGAGAGTCGTGACA
TCATAGCGGACGACAATAAACAACAAGGTCGGTCGTCGAAACCAGATACTTCATCTAACA
ATTCTACTTTGTTGAAAAATGATAGTAGTCGCAAAAAAGAAATGTCTCCATCTACACATA
CACGAAAACGCCGTTACTCAAAAACAGATAGCGATGATAAAGAAGCGATTCCTTCAAAAC
AGAGTCGACCGAGCTTAACATCATCTGGTGATTCATCTGTTGTAGGCGAAGCATTGGCAG
CTTATAAAAAGAACCATACGGGGACACAACATCATCGTTCGGATCACCGTAGACGTTCGT
CCAGCAATCGTCCTAGCTCTCCAAACCATCGAAGTAGCTTTAAGAGTAGTTTTCCAGAAG
GACCTCGTGTCAAAGACAAAACGGATTCCATTTCGCATTCTCGTGACAGCGGCCGACGTC
GTTCACGTTCATTTAACCAAAGACATCGTT

consensusID : consensus_7509#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [TAAATAATATATAAGGATGGTGGGAATATATAACACATGTGACACCTGTTACACTATCTACATGTCTGACTCAGCAAAACAACCAATCATTATCATTCTCGCCCACTCTTCAGTAATCCTATTTTATTGACTGAGTCTTACTTTAATCCTATCGGAGTTTACTCATTATGTAATGAC]

[+] EMBL CD111420             [TAAATAATATATAAGGATGGTGGGAATATATAACACATGTGACACCTGTTACACTATCTACATGTCTGACTCAGCAAAACAACCAATCATTATCATTCTCGCCCACTCTTCAGTAATCCTATTTTATTGACTGAGTCTTACTTTAATCCTATCGGAGTTTACTCATTATGTAATGAC]




>consensus_7509#1
TAAATAATATATAAGGATGGTGGGAATATATAACACATGTGACACCTGTTACACTATCTA
CATGTCTGACTCAGCAAAACAACCAATCATTATCATTCTCGCCCACTCTTCAGTAATCCT
ATTTTATTGACTGAGTCTTACTTTAATCCTATCGGAGTTTACTCATTATGTAATGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7509#0      GCTCTAAACCAAAAATTCTGGATGCAAAGTCGTTCTCTACCTCTAAATCAAGTAGTGACA 60
consensus_7509#1      ----TAAATAATATATAAGGATGGTGGGAATATATAACACATGTGACACCTGTTACACTA 56
                          ****  * * **   *   *        *     ** * * *  *  **      *

consensus_7509#0      ATGTCAGACATAATTCGACAAAAAAACCAGTATCAAGTAATGT-----ATTGTGCGACAG 115
consensus_7509#1      TCTACATGTCTGACTCAGCAAAACAACCAATCATTATCATTCTCGCCCACTCTTCAGTAA 116
                          **    * * **  ***** ***** *    *  * * *     * * * *   * 

consensus_7509#0      TAAAGGTTCAACCTCTGAATCTAAACTGAAATCTATCAGAGATTCAAAGGGTGAGAGTCG 175
consensus_7509#1      TCCTATTTTATTGACTGAGTCTTACTTTAATCCTATCGGAGTTT-----------ACTCA 165
                      *     ** *    **** *** *  * **  ***** *** **           * ** 

consensus_7509#0      TGACATCATAGCGGACGACAATAAACAACAAGGTCGGTCGTCGAAACCAGATACTTCATC 235
consensus_7509#1      TTATGTAATGAC------------------------------------------------ 177
                      * *  * **  *                                                

consensus_7509#0      TAACAATTCTACTTTGTTGAAAAATGATAGTAGTCGCAAAAAAGAAATGTCTCCATCTAC 295
consensus_7509#1      ------------------------------------------------------------
                                                                                  

consensus_7509#0      ACATACACGAAAACGCCGTTACTCAAAAACAGATAGCGATGATAAAGAAGCGATTCCTTC 355
consensus_7509#1      ------------------------------------------------------------
                                                                                  

consensus_7509#0      AAAACAGAGTCGACCGAGCTTAACATCATCTGGTGATTCATCTGTTGTAGGCGAAGCATT 415
consensus_7509#1      ------------------------------------------------------------
                                                                                  

consensus_7509#0      GGCAGCTTATAAAAAGAACCATACGGGGACACAACATCATCGTTCGGATCACCGTAGACG 475
consensus_7509#1      ------------------------------------------------------------
                                                                                  

consensus_7509#0      TTCGTCCAGCAATCGTCCTAGCTCTCCAAACCATCGAAGTAGCTTTAAGAGTAGTTTTCC 535
consensus_7509#1      ------------------------------------------------------------
                                                                                  

consensus_7509#0      AGAAGGACCTCGTGTCAAAGACAAAACGGATTCCATTTCGCATTCTCGTGACAGCGGCCG 595
consensus_7509#1      ------------------------------------------------------------
                                                                                  

consensus_7509#0      ACGTCGTTCACGTTCATTTAACCAAAGACATCGTT 630
consensus_7509#1      -----------------------------------