cluster # 7513

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Schistosoma mansoni
cluster # 7513 cluster # 7513 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7513#0 length = 908 sequences # 4

consensus_7513#1 length = 242 sequences # 1

consensusID : consensus_7513#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 908
fasta sequence

                              [CAAATATGGACGATTTAAGCCTATGAACAGACATAATACATGGATCTGCATCAGAATATAAAACAACATCTATTTCTGTAGATGCCGCCGTCGAGGTAATAATCATTGATGGTATTGAATTAAATTCTGTTTCACTAGAATCTGAATGAGGACCAGTTTTTGTTCGACTACTACTACTACTTCTATGATTAGAAGATGATGTTTTATCACCTGACTTGGTAGTTTCATCATTTAATGAGTATTGCACAACATGAACATCATCGACGATTTGTGATAAATAATATTCTAAATCTTTAATGATACTTGTTCTATTTGAAGGATCTTTGCCATTGATTTTAGGATCTGTTGAAGGTATACGTTCCACAGCTTTATAATGAGTATTCCATTTTGAAGTTAAATATTGAGCACTTCTAGGAGTTCTAGTAATTAAATCCAATAATGCACCAGTTGTGATTTCATTAGACCAATGAGATCCCACAATTGGTGAATTATTCATTATCATCGATTGATTCATATTTATTTCATATAGAACACGTAATAAACCTTCCAATATAACACGTGTATTTCGAGCTAATATAACTGAATTCACATTGCCACGATGTATAATAGTATGATTAGAATAATCCGCTAATACATCATCATCATTATCCTTATTCATCACATTAATACCATCTAAAGTAGTTTGACCCCATTGATTAGCAAATTGTATAGATGGCCCATTTGATAATGTTACACTTGGTAATCGATGAATAGAGAAACGTTCATGTTCCCATGCTAAAATTTCTTGATTTAAATTAATTTTTTTATGAATCATTTGAATGGTATTAGTGTTGGATTCATTGTTACTTAGCGATTGATGATTGTGAATTATTAGCTGAAATGAGAATTAAAATACCCCCCCCCCCGCA]

[+] EMBL CD152402             [CAAATATGGACGATTTAAGCCTATGAACAGACATAATACATGGATCTGCATCAGAATATAAAACAACATCTATTTCTGTAGATGCCGCCGTCGAGGTAATAATCATTGATGGTATTGAATTAAATTCTGTTTCACTAGAATCTGAATGAGGACCAGTTTTTGTTCGACTACTACTACTACTTCTATGATTAGAAGATGATGTTTTATCACCTGACTTGGTAGTTTCATCATTTAATGAGTATTGCACAACATGAACATCATCGACGATTTGTGATAAATAATATTCTAAATCTTTAATGATACTTGTTCTATTTGAAGGATCTTTGCCATTGATTTTAGGATCTGTTGAAGGTATACGTTCCACAGCTTTATAATGAGTATTCCATTTTGAAGTTAAATATTGAGCACTTCTAGGAGTTCTAGTAATTAAATCCAATAATGCACCAGTTGTGATTTCATTAGACCAATGAGATCCCACAATTGGTGAATTATTCATTATCATCGATTGATT                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD071825             [                                                     GAATATTAACCAACATCTATTTCTGTAGATGCCGCCGTCGAGGTAATAATCATTGATGGTATTGAATTAAATTCTGTTTCACTAGAATCTGAATGAGGACCAGTTTTTGTTCGACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD123619             [                                                                                                                                                                                                                                                                                                                                                 AGGATCTGTTGCAGGTATACGTTCCACAGCTTTATAATGAGTATTCCATTTTGAAGTTAAATATTGAGCACTTCTAGGAGTTCTAGTAATTAAATCCAATAATGCACCAGTTGTGATTTCATTAGACCAATGAGATCCAACAATTGGTGAATTATTCATTATCATCGATTGATTCATATTTATTTCATATAGAACACGTAATAAACCTTCCAATATAACACGTGTATTTCGAGCTAATATAACTGAATTCACATTGCCACGATGTATAATAGTATGATTAGAATAATCCGCTAATACATCATCATCATTATCCTTA                                                                                                                                                                                                                                                               ]
[-] EMBL CD069180             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gATGACACGTGTATTTCGAGCTAATATAACTGAATGCACATTGCCACGATGTATAATAGTATGATTAGAATAGTCCGCTAATACATCATCATCATTATTCTTATTCATCACATTAATACCATCTAAAGTAGTTTGACCCCATTGATTAGCAAATTGTATAGATGGCCCATTTGATAATGTTACACTTGGTAATCGATGAATAGAGAAACGTTCATGTTCCCATGCTAAAATTTCTTGATTTAAATTAATTTTTTTATGAATCATTTGAATGGTATTAGTGTTGGATTCATTGTTACTTAGCGATTGATGATTGTGAATTATTAGCTGAAATGAGAATTAAAATACCCCCCCCCCCGCA]




>consensus_7513#0
CAAATATGGACGATTTAAGCCTATGAACAGACATAATACATGGATCTGCATCAGAATATA
AAACAACATCTATTTCTGTAGATGCCGCCGTCGAGGTAATAATCATTGATGGTATTGAAT
TAAATTCTGTTTCACTAGAATCTGAATGAGGACCAGTTTTTGTTCGACTACTACTACTAC
TTCTATGATTAGAAGATGATGTTTTATCACCTGACTTGGTAGTTTCATCATTTAATGAGT
ATTGCACAACATGAACATCATCGACGATTTGTGATAAATAATATTCTAAATCTTTAATGA
TACTTGTTCTATTTGAAGGATCTTTGCCATTGATTTTAGGATCTGTTGAAGGTATACGTT
CCACAGCTTTATAATGAGTATTCCATTTTGAAGTTAAATATTGAGCACTTCTAGGAGTTC
TAGTAATTAAATCCAATAATGCACCAGTTGTGATTTCATTAGACCAATGAGATCCCACAA
TTGGTGAATTATTCATTATCATCGATTGATTCATATTTATTTCATATAGAACACGTAATA
AACCTTCCAATATAACACGTGTATTTCGAGCTAATATAACTGAATTCACATTGCCACGAT
GTATAATAGTATGATTAGAATAATCCGCTAATACATCATCATCATTATCCTTATTCATCA
CATTAATACCATCTAAAGTAGTTTGACCCCATTGATTAGCAAATTGTATAGATGGCCCAT
TTGATAATGTTACACTTGGTAATCGATGAATAGAGAAACGTTCATGTTCCCATGCTAAAA
TTTCTTGATTTAAATTAATTTTTTTATGAATCATTTGAATGGTATTAGTGTTGGATTCAT
TGTTACTTAGCGATTGATGATTGTGAATTATTAGCTGAAATGAGAATTAAAATACCCCCC
CCCCCGCA

consensusID : consensus_7513#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 242
fasta sequence

                              [AATTTGTATAGATGGCCAATTTGATAATGTTACACTTGGTAATCGATGAATAGAGAAACGTTCATGTTCCCATGCTAAAATTTCTTGATTTAAATTAATTTTTTTATGAATCATTTGAATGGTATTAGTGTTGGATTCATTGTTACTTAGCGATTGATGATTGTGAATTATTAGCTCATTTGGAAATGAATGTAACTGACTGGCTACATTTAAAGCTTTAAGAAAACAATATAAAAATGAAC]

[+] EMBL CD147561             [AATTTGTATAGATGGCCAATTTGATAATGTTACACTTGGTAATCGATGAATAGAGAAACGTTCATGTTCCCATGCTAAAATTTCTTGATTTAAATTAATTTTTTTATGAATCATTTGAATGGTATTAGTGTTGGATTCATTGTTACTTAGCGATTGATGATTGTGAATTATTAGCTCATTTGGAAATGAATGTAACTGACTGGCTACATTTAAAGCTTTAAGAAAACAATATAAAAATGAAC]




>consensus_7513#1
AATTTGTATAGATGGCCAATTTGATAATGTTACACTTGGTAATCGATGAATAGAGAAACG
TTCATGTTCCCATGCTAAAATTTCTTGATTTAAATTAATTTTTTTATGAATCATTTGAAT
GGTATTAGTGTTGGATTCATTGTTACTTAGCGATTGATGATTGTGAATTATTAGCTCATT
TGGAAATGAATGTAACTGACTGGCTACATTTAAAGCTTTAAGAAAACAATATAAAAATGA
AC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7513#0      CAAATATGGACGATTTAAGCCTATGAACAGACATAATACATGGATCTGCATCAGAATATA 60
consensus_7513#1      ------------------------------------------------------------
                                                                                  

consensus_7513#0      AAACAACATCTATTTCTGTAGATGCCGCCGTCGAGGTAATAATCATTGATGGTATTGAAT 120
consensus_7513#1      ------------------------------------------------------------
                                                                                  

consensus_7513#0      TAAATTCTGTTTCACTAGAATCTGAATGAGGACCAGTTTTTGTTCGACTACTACTACTAC 180
consensus_7513#1      ------------------------------------------------------------
                                                                                  

consensus_7513#0      TTCTATGATTAGAAGATGATGTTTTATCACCTGACTTGGTAGTTTCATCATTTAATGAGT 240
consensus_7513#1      ------------------------------------------------------------
                                                                                  

consensus_7513#0      ATTGCACAACATGAACATCATCGACGATTTGTGATAAATAATATTCTAAATCTTTAATGA 300
consensus_7513#1      ------------------------------------------------------------
                                                                                  

consensus_7513#0      TACTTGTTCTATTTGAAGGATCTTTGCCATTGATTTTAGGATCTGTTGAAGGTATACGTT 360
consensus_7513#1      ------------------------------------------------------------
                                                                                  

consensus_7513#0      CCACAGCTTTATAATGAGTATTCCATTTTGAAGTTAAATATTGAGCACTTCTAGGAGTTC 420
consensus_7513#1      ------------------------------------------------------------
                                                                                  

consensus_7513#0      TAGTAATTAAATCCAATAATGCACCAGTTGTGATTTCATTAGACCAATGAGATCCCACAA 480
consensus_7513#1      ------------------------------------------------------------
                                                                                  

consensus_7513#0      TTGGTGAATTATTCATTATCATCGATTGATTCATATTTATTTCATATAGAACACGTAATA 540
consensus_7513#1      ------------------------------------------------------------
                                                                                  

consensus_7513#0      AACCTTCCAATATAACACGTGTATTTCGAGCTAATATAACTGAATTCACATTGCCACGAT 600
consensus_7513#1      ------------------------------------------------------------
                                                                                  

consensus_7513#0      GTATAATAGTATGATTAGAATAATCCGCTAATACATCATCATCATTATCCTTATTCATCA 660
consensus_7513#1      ------------------------------------------------------------
                                                                                  

consensus_7513#0      CATTAATACCATCTAAAGTAGTTTGACCCCATTGATTAGCAAATTGTATAGATGGCCCAT 720
consensus_7513#1      ----------------------------------------AATTTGTATAGATGGCCAAT 20
                                                              ** ************** **

consensus_7513#0      TTGATAATGTTACACTTGGTAATCGATGAATAGAGAAACGTTCATGTTCCCATGCTAAAA 780
consensus_7513#1      TTGATAATGTTACACTTGGTAATCGATGAATAGAGAAACGTTCATGTTCCCATGCTAAAA 80
                      ************************************************************

consensus_7513#0      TTTCTTGATTTAAATTAATTTTTTTATGAATCATTTGAATGGTATTAGTGTTGGATTCAT 840
consensus_7513#1      TTTCTTGATTTAAATTAATTTTTTTATGAATCATTTGAATGGTATTAGTGTTGGATTCAT 140
                      ************************************************************

consensus_7513#0      TGTTACTTAGCGATTGATGATTGTGAATTATTAGCTGAAATGAGAATTAAAATACCCCCC 900
consensus_7513#1      TGTTACTTAGCGATTGATGATTGTGAATTATTAGCTCATTTGGAAATGAATGTAACTGAC 200
                      ************************************ *  **  *** **  ** *   *

consensus_7513#0      CCCCCGCA---------------------------------- 908
consensus_7513#1      TGGCTACATTTAAAGCTTTAAGAAAACAATATAAAAATGAAC 242
                         *  **