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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1039 fasta sequence
[CGAGGCCAGTAATTCGGCACGAGGAGCATGAGTCAATTGAAGCTAGACCACCTCGAAAACCTGGAAGCACTGCTGAGGAGTTCCATAGTATTTTTTTTGTTTTACGATGGTTGAATTATATACTATAGGATCTAGAAAATTAATTACCTCTTAAATCATTATATTTAAAGCAGATTTTTTACATTTTGAATAATAAGAATATAATCACTGCTTTATTGGTTGATAAAATTTCATATGATTACTAAGTCCTATGGTATATAAAACTCTGTACGTAAGCAAATTAGTTGATAAAAGTATCATTGAATATGCAGTTGAAGGATGAATGCTCAAAGTCGTATCTTTCATCGTTTGAAATCCATCGAACTCATTAAGGGCAGAGTAATATTATTTTCAGATTGTTTCTGGGAAAACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTACTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTTTATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCATTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAACCATTGAAACGAAAAAAGATAATGCAAAATAATACTTGTTTAACTGACTGTCAAAGTTTTCAAAAGTGATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAGGATTTAGTCATTTGTTAATCTGTTCACATTACTATTGTTTATTTAAAATTAACAATCCGGGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGGAATTATCACTGGNACCATATACCATACAACTGGTATCGATGAAATATGTCATTCACTATTCACACATAGTAATGGNTATATATNGCATATGGCTATTAANTTTTTTTTGGTAAATGGCTTAAAGATTTTGTTTTCCAAGAGAGATCGACCATTAAA]
[+] EMBL CD081776 [CGAGGCCAGTAATTCGGCACGAGGAGCATGAGTCAATTGAAGCTAGACCACCTCGAAAACCTGGAAGCACTGCTGAGGAGTTCCATAGTATTTTTTTTGTTTTACGATGGTTGAATTATATACTATAGGATCTAGAAAATTAATTACCTCTTAAATCATTATATTTAAAGCAGATTTTTTACATTTTGAATAATAAGAATATAATCACTGCTTTATTGGTTGATAAAATTTCATATGATTACTAAGTCCTATGGTATATAAAACTCTGTACGTAAGCAAATTAGTTGATAAAAGTATCATTGAATATGCAGTTGAAGGATGAATGCTCAAAGTCGTATCTTTCATCGTTTGAAATCCATCGAACTCATTAAGGGCAGAGTAATATTATTTTCAGATTGTTTCTGGGAAAACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTACTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTTTATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCATTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAACCATTGAAACGAAAAAAGATAATGCAAAATAATACTTGTTTAACTGACTGTCAAAGTTTTCAAAAGTGATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAGGATTTAGTCATTTGTTAATCTGTTCACATTACTATTGTTTATTTAAAATTAACAATCCGGGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGGAATTATCACTGGNACCATATACCATACAACTGGTATCGATGAAATATGTCATTCACTATTCACACATAGTAATGGNTATATATNGCATATGGCTATTAANTTTTTTTTGGTAAATGGCTTAAAGATTTTGTTTTCCAAGAGAGATCGACCATTAAA]
consensusID : consensus_7524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 818 fasta sequence
[CANNATTGTTAGCTGATAATATATCATCTTTAATATGTAAACGATAACACGAGATTGAATCATTATGTTGTAGTNTGAAATTTGTCTTAAAATTGAAAGTAACATTTGCTTCACCTGGGAGATACCCGAACACAGTCTTAAGAAACTCACTGACTTCGTGTAAACCTTTGGTTTTGCGTATTTTGACATTATGTGTTGAATTAGTGAATGACATAATTTCATCGATTACAGTTTGTATGGTATTATTGGTCCAGTGATTAATTCCAGCTCGACTAAGAAGATCAAAGATGAAACTGCCATCTTTGGTAAGACCTTCAGGAGGAACATTTAATTCATCAATTAATCTTTCTAATTCAATCAACTGTCCTTTTAATGTGATCATTTTCTCGATGCTCAAAGCTTCAATTGCATTTCCTTCAGGATGCGTCATATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACTATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCTTAGTATGATCGAGTACAACTTCGCACACACATTTGACATGTTCAATAGCTGACGCTAATAAGGCAGAACTTAATGTCACCGATGAAGCATCTTCACATACTTGCTCAATATTATGAGCTTCATCGAAAATAACTGTTGTATTTTCAAGGTTAATATTATAAAGACTTCGAATTCGTGGGTCAAGCACGTAATTATAAGGCATGAAAATCAAAGATGAATCAGTCTTAAGTTCTCTCGATATGAAATAAGGACAACATCTAAAACAAAAAAACAGTACAAACTTATTT]
[-] EMBL CD195191 [CANNATTGTTAGCTGATAATATATCATCTTTAATATGTAAACGATAACACGAGATTGAATCATTATGTTGTAGTNTGAAATTTGTCTTAAAATTGAAAGTAACATTTGCTTCACCTGGGAGATACCCGAACACAGTCTTAAGAAACTCACTGACTTCGTGTAAACCTTTGGTTTTGCGTATTTTGACATTATGTGTTGAATTAGTGAATGACATAATTTCATCGATTACAGTTTGTATGGTATTATTGGTCCAGTGATTAATTCCAGCTCGACTAAGAAGATCAAAGATGAAACTGCCATCTTTGGTAAGACCTTCAGGAGGAACATTTAATTCATCAATTAATCTTTCTAATTCAATCAACTGTCCTTTTAATGTGATCATTTTCTCGATGCTCAAAGCTTCAATTGCATTTCCTTCAGGATGCGTCATATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACTATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCTTAGTATGA ]
[-] EMBL CD195185 [ TGTTAGCTGATAATATATCATCTTTAATATGTAAACGATAACACGAGATTGAATCATTATGTTGTAGTNTGAAATTGTTCTTAAAATTGAAAGTAACATTTGCTTCACCTGGGAGATACCCGAACACAGTCTTAAGAAACTCACTGACTTCGTGTAAACCTTTGGTTTTGCGTATTTTGACATTATGTGTTGAATTAGTGAATGACATAATTTCATCGATTACAGTTTGTATGGTATTATTGGTCCAGTGATTAATTCCAGCTCGACTAAGAAGATCAAAGATGAAACTGCCATCTTTGGTAAGACCTTCAGGAGGAACATTTAATTCATCAATTAATCTTTCTAATTCAATCAACTGTCCTTTTAATGTGATCATTTTCTCGATGCTCAAAGCTTCAATTGCATTTCCTTCAGGATGCGTCATATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACTATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCTTAGTATGA ]
[+] EMBL CD121592 [ TATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACTATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCTTAGTATGATCGAGTACAACTTCGCACACACATTTGACATGTTCAATAGCTGACGCTAATAAGGCAGAACTTAATGTCACCGATGAAGCATCTTCACATACTTGCTCAATATTATGAGCTTCATCGAAAATAACTGTTGTATTTTCAAGGTTAATATTATAAAGACTTCGAATTCGTGGGTCAAGCACGTAATTATAAGGCATGAAAATCAAAGATGAATCAGTCTTAAGTTCTCTCGATATGAAATAAGGACAACATCTAAAACAAAAAAACAGTACAAACTTATTT]
consensusID : consensus_7524#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence
[ATCATTGAATATGCAGTTGAAGGATGAATGCTCAAAGTCGTATCTTTCATCGTTTGAAATCCATCGAACTCATTAAGGGCAGAGTAATATTATTTTCAGATTGTTTCTGGGAAAACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTACTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTTTATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCATTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAACCATTGAAACGAAAAAAGATAATGCAAAATAATACTTGTTTAACTGACTGTCAAAGTTTTCAAAAGTGATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAGGATTTAGTCATTTGTTAATCTGTTCACATTACTATTGTTTATTTAAAATTAACAATCCGGGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGGAATTAATCACTGGACCAATAATACCATACAAACTGTAATCGATGAAATTATGTCATTCACTAATTCAACACATAGTAATTGTTATTAGATGCATTATTGCTTATTTAATTTTATTTTGTTAAATGTCTTTTAAAGATTTTTGTATTCCAAAAGAGAAGATCAGAGCTTTT]
[-] EMBL CD075507 [ATCATTGAATATGCAGTTGAAGGATGAATGCTCAAAGTCGTATCTTTCATCGTTTGAAATCCATCGAACTCATTAAGGGCAGAGTAATATTATTTTCAGATTGTTTCTGGGAAAACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTACTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTTTATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCATTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAACCATTGAAACGAAAAAAGATAATGCAAAATAATACTTGTTTAACTGACTGTCAAAGTTTTCAAAAGTGATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAGGATTTAGTCATTTGTTAATCTGTTCACATTACTATTGTTTATTTAAAATTAACAATCCGGGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGGAATTAATCACTGGACCAATAATACCATACAAACTGTAATCGATGAAATTATGTCATTCACTAATTCAACACATAGTAATTGTTATTAGATGCATTATTGCTTATTTAATTTTATTTTGTTAAATGTCTTTTAAAGATTTTTGTATTCCAAAAGAGAAGATCAGAGCTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7524#0 CGAGGCCAGTAATTCGGCACGAGGAGCATGAGTCAATTGAAGCTAGACCACCTCGAAAAC 60
consensus_7524#2 ------------------------------------------------------------
consensus_7524#1 ------------------------------------------------------------
consensus_7524#0 CTGGAAGCACTGCTGAGGAGTTCCATAGTATTTTTTTTGTTTTACGATGGTTGAATTATA 120
consensus_7524#2 ------------------------------------------------------------
consensus_7524#1 ------------------------------------------------------------
consensus_7524#0 TACTATAGGATCTAGAAAATTAATTACCTCTTAAATCATTATATTTAAAGCAGATTTTTT 180
consensus_7524#2 ------------------------------------------------------------
consensus_7524#1 ------------------------------------------------------------
consensus_7524#0 ACATTTTGAATAATAAGAATATAATCACTGCTTTATTGGTTGATAAAATTTCATATGATT 240
consensus_7524#2 ------------------------------------------------------------
consensus_7524#1 -----------------------------------------------------CANNATT 7
consensus_7524#0 ACTAAGTCCTATGGTATATAAAACTCTGTACGTAAGCAAATTAGTTGATAAAAGTATCAT 300
consensus_7524#2 -------------------------------------------------------ATCAT 5
consensus_7524#1 GTTAG--CTGATAATATATCATCTTTAATATGTAAACGA--TAACACGAGATTGAATCAT 63
*****
consensus_7524#0 TGAATATGCAGTT-GAAGGATG----AATGCTCAAAGTCGTATCTTTCATCGTTTGAAAT 355
consensus_7524#2 TGAATATGCAGTT-GAAGGATG----AATGCTCAAAGTCGTATCTTTCATCGTTTGAAAT 60
consensus_7524#1 TATGT-TGTAGTNTGAAATTTGTCTTAAAATTGAAAGTAACAT-TTGCTTCACCTGGGAG 121
* * ** *** *** ** ** * ***** ** ** * ** ** *
consensus_7524#0 CCATC-GAACTCA---TTAAGGG-CAGAGTAATATTATTTTCAGATT-GTTTCTGGGAAA 409
consensus_7524#2 CCATC-GAACTCA---TTAAGGG-CAGAGTAATATTATTTTCAGATT-GTTTCTGGGAAA 114
consensus_7524#1 ATACCCGAACACAGTCTTAAGAAACTCACTGACTTCGTGTAAACCTTTGGTTTTGCGTAT 181
* * **** ** ***** * * * * * * * * ** * ** ** * *
consensus_7524#0 ACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTA 469
consensus_7524#2 ACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTA 174
consensus_7524#1 TTTGACATTATGTGTTGA-ATTAGTGAATGACATAATTTCATCGATTACAGTTTGTATGG 240
* ** ** * * ** * * * ** ** ** ** *** * * ***
consensus_7524#0 CTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTT-T 528
consensus_7524#2 CTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTT-T 233
consensus_7524#1 TATTATTGGTCCAGTGATTAATTCCAGCTCGACTAAGAAGATCAAAGATGAAACTGCCAT 300
* * * * * * * * * ** * * ** ** * * * *
consensus_7524#0 ATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCA 588
consensus_7524#2 ATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCA 293
consensus_7524#1 CTTTGGTAAGACCTTCAGGAGGAACATTTAATTCATCAATTA-ATCTTTCTAATTCAATC 359
*** **** * * ***** ** * * * ** *** ****
consensus_7524#0 TTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAAC-CATTGAAACG 647
consensus_7524#2 TTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAAC-CATTGAAACG 352
consensus_7524#1 AACTGTCCTTTTAATGTGATCATTTTCT-CGATGCTCAAAGCTTCAATTGCATTTCCTTC 418
* ** * *** * ** * ** * * * ** ****
consensus_7524#0 AAAAAAGATAATGCAAAATAATACTTGTTTA---ACTGACTGTCAAAGTTTTCAAAAGTG 704
consensus_7524#2 AAAAAAGATAATGCAAAATAATACTTGTTTA---ACTGACTGTCAAAGTTTTCAAAAGTG 409
consensus_7524#1 AGGATGCGTCATATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACT 478
* * * ** *** *** *** * ** * * * * ******
consensus_7524#0 ATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAG 764
consensus_7524#2 ATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAG 469
consensus_7524#1 ATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCT-TAGTAT 537
*** * * * * *** * * * ** * ** **
consensus_7524#0 GATTTAGTCATTTGTTAATCTGTTCACATTAC-TATTGTTTATTTAAAATTAACAATCCG 823
consensus_7524#2 GATTTAGTCATTTGTTAATCTGTTCACATTAC-TATTGTTTATTTAAAATTAACAATCCG 528
consensus_7524#1 GATCGAGT-ACAACTTCGCACACACATTTGACATGTTCAATAGCTGACGCTAATAAGGCA 596
*** *** * ** ** * ** * ** ** * * *** ** *
consensus_7524#0 GGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGG 883
consensus_7524#2 GGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGG 588
consensus_7524#1 GAACTT--------AATGTCACCGATGAAGCATCTTCACATACTTGCTCAATATTATGAG 648
* ** * * * * * ** ** ** * * ** * * *
consensus_7524#0 AATTA-TCACTGGNACCATA-TACCATACAA-CTGGTATCGATGAAAT-ATGTCATTCAC 939
consensus_7524#2 AATTAATCACTGGACCAATAATACCATACAAACTGTAATCGATGAAATTATGTCATTCAC 648
consensus_7524#1 CTTCATCGAAAATAACTGTTGTATTTTCAAGGTTAATATT-ATAAAGACTTCGAATTCGT 707
* * * * * ** * * * ** ** ** * ****
consensus_7524#0 TATTC--ACACATAGTAATG-GNTATATATNGCAT--ATGGCTA---TTAANTTTTTTTT 991
consensus_7524#2 TAATTCAACACATAGTAATT-GTTATTAGATGCATT-ATTGCTTA-TTTAATTTTATTTT 705
consensus_7524#1 GGGTCAAGCACGTAATTATAAGGCATGAAAATCAAAGATGAATCAGTCTTAAGTTCTCTC 767
* *** ** * ** * ** ** ** * * * ** * *
consensus_7524#0 GGTAAATGGCTT--AAAGATTTT-GTTTTCCAAGAGAGATCGACCATTAAA--- 1039
consensus_7524#2 GTTAAATGTCTTTTAAAGATTTTTGTATTCCAAAAGAGAA-GATCAGAGCTTTT 758
consensus_7524#1 GATATGAAATAAGGACAACATCTAAAACAAAAAAACAGTACAAACTTATTT--- 818
* ** * * * * ** * ** * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||