cluster # 7535

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Schistosoma mansoni
cluster # 7535 cluster # 7535 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7535#0 length = 1120 sequences # 2

consensus_7535#1 length = 605 sequences # 3

consensusID : consensus_7535#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1120
fasta sequence

                              [CCGAGCCAATTTTCGGCACGAGGGTTGCTTGTGTACAATGAGCAAAAAGGTCATTTGCCTATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTGGATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCCAGAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTGAAAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGCATGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACCTCTGGCTTCCGAGGAAAAGAGGAAATTTTATTGAATTCAGAAATGGTTTGATAAATGTTTGTCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGAAACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGAATTTGATTCAAGTCCTTTACAATTCGCTATAGGTGGACAAATTAGTATTGATGTTTTTCCAAAAGGTTGGGACCAACGATACTGTTTACAATTCTTGGAAGATTACGATACTATACATTTTTTTGGCGACAAAACAGAGGAGGGTGGAAATGATTACGAAATATTCAGTGACCCACGAACTATTGGACATACTGTCACATCACCGGAAAATACAGAAGCTCAACTCAAAGCGTTATTCCCTGAATATTGTTAATCATGTATATAAATAAACCCATAGCAATAAGAAATGACAGCGTTTGGAAAAGAAAAATATAAGTGCAAATCTATTTTTAAATCGTTTTTGTAAACAGAATTTTAGTTTACACTAGGCACAGTTTTGTTTGTTCATTTGTTACTTTGACTTCTTGTTTATACTTAAATATTACTATTGTTTGATGATTGATTATTCCAGTTTGTGCGCGATGATGGTATTTTATAGAACAATAGTTATTACTTTTTAATATTGCCATATCTTATCTTATTTTGTCCTTTTTTTAATTCATTAGGTTACTTTTCCTGTAGAAACTATAATATGTTATTGTATTTGTAATTAGATATT]

[+] EMBL CD083289             [CCGAGCCAATTTTCGGCACGAGGGTTGCTTGTGTACAATGAGCAAAAAGGTCATTTGCCTATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTGGATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCCAGAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTGAAAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGCATGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACCTCTGGCTTCCGAGGAAAAGAGGAAATTTTATTGAATTCAGAAATGGTTTGATAAATGTTTGTCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGAAACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGAATTTGATTCAAGTCCTTTACAATTCGCTATAGGTGGACAAATTAGTATTGATGTTTTTCCAAAAGGTTGGGACCAACGATACTGTTTACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD076860             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTATTGATGTTTTTCCAAAAGGTTGGGACAAACGATACTGTTTACAATTCTTGGAAGATTACGATACTATACATTTTTTTGGCGACAAAACAGAGGAGGGTGGAAATGATTACGAAATATTCAGTGACCCACGAACTATTGGACATACTGTCACATCACCGGAAAATACAGAAGCTCAACTCAAAGCGTTATTCCCTGAATATTGTTAATCATGTATATAAATAAACCCATAGCAATAAGAAATGACAGCGTTTGGAAAAGAAAAATATAAGTGCAAATCTATTTTTAAATCGTTTTTGTAAACAGAATTTTAGTTTACACTAGGCACAGTTTTGTTTGTTCATTTGTTACTTTGACTTCTTGTTTATACTTAAATATTACTATTGTTTGATGATTGATTATTCCAGTTTGTGCGCGATGATGGTATTTTATAGAACAATAGTTATTACTTTTTAATATTGCCATATCTTATCTTATTTTGTCCTTTTTTTAATTCATTAGGTTACTTTTCCTGTAGAAACTATAATATGTTATTGTATTTGTAATTAGATATT]




>consensus_7535#0
CCGAGCCAATTTTCGGCACGAGGGTTGCTTGTGTACAATGAGCAAAAAGGTCATTTGCCT
ATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTGG
ATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCCA
GAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTGA
AAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGCA
TGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACCT
CTGGCTTCCGAGGAAAAGAGGAAATTTTATTGAATTCAGAAATGGTTTGATAAATGTTTG
TCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGAA
ACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGAATTTGATTCAAGTCCTTT
ACAATTCGCTATAGGTGGACAAATTAGTATTGATGTTTTTCCAAAAGGTTGGGACCAACG
ATACTGTTTACAATTCTTGGAAGATTACGATACTATACATTTTTTTGGCGACAAAACAGA
GGAGGGTGGAAATGATTACGAAATATTCAGTGACCCACGAACTATTGGACATACTGTCAC
ATCACCGGAAAATACAGAAGCTCAACTCAAAGCGTTATTCCCTGAATATTGTTAATCATG
TATATAAATAAACCCATAGCAATAAGAAATGACAGCGTTTGGAAAAGAAAAATATAAGTG
CAAATCTATTTTTAAATCGTTTTTGTAAACAGAATTTTAGTTTACACTAGGCACAGTTTT
GTTTGTTCATTTGTTACTTTGACTTCTTGTTTATACTTAAATATTACTATTGTTTGATGA
TTGATTATTCCAGTTTGTGCGCGATGATGGTATTTTATAGAACAATAGTTATTACTTTTT
AATATTGCCATATCTTATCTTATTTTGTCCTTTTTTTAATTCATTAGGTTACTTTTCCTG
TAGAAACTATAATATGTTATTGTATTTGTAATTAGATATT

consensusID : consensus_7535#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 605
fasta sequence

                              [TTTACTCTTGTGATTTGTTGCATGTTGCTTGTGTACAATGAGCAAAAAGGTCATTTGCCTATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTGGATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCCAGAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTGAAAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGCATGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACCTCTGGCTTCCGAGGAAAAGAGGAAATTTTATTGAATTCAGAAATGGTTTGATAAATGTTTGTCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGAAACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGAATTTGATTCAAGTCCTTTACAATTCGCTATAGGTGGACAAATTAGTATTGATGTTTTTCCAAAAGGTTGGGACAAACGATACT]

[+] EMBL AW017469             [TTTACTCTTGTGATTTGTTGCATGTTGCTTGTGTACAATGAGCAAAAAGGTCATTTGCCTATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTGGATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCCAGAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTGAAAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGCATGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACCTCTGGCTTCCGAGGAAAAGAGGAAATTTTATTGAATTCAGAAATGGTTTGATAAATGTTTGTCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGAAACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGAATTTGATTCAAGTCCTTTACAATTCGCTATAGGTGGACAAATTAGTATTGATGTTTTTCCAAAAGGTTGGGACAAACGATACT]
[-] EMBL CD200282             [                                                   CATTTGCCTATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTGGATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCCAGAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTGAAAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGCATGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACCT                                                                                                                                                                                                                                                     ]
[+] EMBL BE505126             [                                                                                                                                                                                                                                                                                                                                                                                                   TATTGAATTCAGAAATGGTTTGATAAATGTTTGTCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGAAACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGNATTTGATTCAAGTCCTTTACAATTCGCTATAGGNGGACAAATTAGTATTGANGTTTTTCCAAAAG                  ]




>consensus_7535#1
TTTACTCTTGTGATTTGTTGCATGTTGCTTGTGTACAATGAGCAAAAAGGTCATTTGCCT
ATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTGG
ATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCCA
GAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTGA
AAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGCA
TGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACCT
CTGGCTTCCGAGGAAAAGAGGAAATTTTATTGAATTCAGAAATGGTTTGATAAATGTTTG
TCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGAA
ACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGAATTTGATTCAAGTCCTTT
ACAATTCGCTATAGGTGGACAAATTAGTATTGATGTTTTTCCAAAAGGTTGGGACAAACG
ATACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7535#0      -CCGAGCCAATTTTCGGCACGAGGGTTGCTTGTGTACAATGAGCAAAAAGGTCATTTGCC 59
consensus_7535#1      TTTACTCTTGTGATTTGT-TGCATGTTGCTTGTGTACAATGAGCAAAAAGGTCATTTGCC 59
                            *   *  *  *   *   ************************************

consensus_7535#0      TATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTG 119
consensus_7535#1      TATTTGACGTTGATGGGACACTTACAAAGCCACGCAATATTATATCCGATCATATGTCTG 119
                      ************************************************************

consensus_7535#0      GATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCC 179
consensus_7535#1      GATTTTTGCTTAAATTGTGCTCTAATGTTCCCTTGGCTGTGGTTAGTGGTTCGGATTTCC 179
                      ************************************************************

consensus_7535#0      AGAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTG 239
consensus_7535#1      AGAAAGTTTCGTCACAGATTGGGACATTAGCTACCGAAAAATTTCCATATATATTCTCTG 239
                      ************************************************************

consensus_7535#0      AAAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGC 299
consensus_7535#1      AAAATGGTTTAGTAGTACACAATTATGGTCAGAAAATTAAAAGTACGAATATTGTTGAGC 299
                      ************************************************************

consensus_7535#0      ATGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACC 359
consensus_7535#1      ATGTTAGTGAAGACACCCTTCAACGTTTCATCAACTTTTGCCTCCAGTATATGTCGAACC 359
                      ************************************************************

consensus_7535#0      TCTGGCTTCCGAGGAAAAGAGGAAATTTTATTGAATTCAGAAATGGTTTGATAAATGTTT 419
consensus_7535#1      TCTGGCTTCCGAGGAAAAGAGGAAATTTTATTGAATTCAGAAATGGTTTGATAAATGTTT 419
                      ************************************************************

consensus_7535#0      GTCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGA 479
consensus_7535#1      GTCCAGTTGGACGAAGCTGTAGTCAAGAAGAACGAGATGAATTTGCTGAATATGATGCGA 479
                      ************************************************************

consensus_7535#0      AACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGAATTTGATTCAAGTCCTT 539
consensus_7535#1      AACATAAAATTCGCGAAGATTTTGTCATGAAAATGCGTTCGGAATTTGATTCAAGTCCTT 539
                      ************************************************************

consensus_7535#0      TACAATTCGCTATAGGTGGACAAATTAGTATTGATGTTTTTCCAAAAGGTTGGGACCAAC 599
consensus_7535#1      TACAATTCGCTATAGGTGGACAAATTAGTATTGATGTTTTTCCAAAAGGTTGGGACAAAC 599
                      ******************************************************** ***

consensus_7535#0      GATACTGTTTACAATTCTTGGAAGATTACGATACTATACATTTTTTTGGCGACAAAACAG 659
consensus_7535#1      GATACT------------------------------------------------------ 605
                      ******                                                      

consensus_7535#0      AGGAGGGTGGAAATGATTACGAAATATTCAGTGACCCACGAACTATTGGACATACTGTCA 719
consensus_7535#1      ------------------------------------------------------------
                                                                                  

consensus_7535#0      CATCACCGGAAAATACAGAAGCTCAACTCAAAGCGTTATTCCCTGAATATTGTTAATCAT 779
consensus_7535#1      ------------------------------------------------------------
                                                                                  

consensus_7535#0      GTATATAAATAAACCCATAGCAATAAGAAATGACAGCGTTTGGAAAAGAAAAATATAAGT 839
consensus_7535#1      ------------------------------------------------------------
                                                                                  

consensus_7535#0      GCAAATCTATTTTTAAATCGTTTTTGTAAACAGAATTTTAGTTTACACTAGGCACAGTTT 899
consensus_7535#1      ------------------------------------------------------------
                                                                                  

consensus_7535#0      TGTTTGTTCATTTGTTACTTTGACTTCTTGTTTATACTTAAATATTACTATTGTTTGATG 959
consensus_7535#1      ------------------------------------------------------------
                                                                                  

consensus_7535#0      ATTGATTATTCCAGTTTGTGCGCGATGATGGTATTTTATAGAACAATAGTTATTACTTTT 1019
consensus_7535#1      ------------------------------------------------------------
                                                                                  

consensus_7535#0      TAATATTGCCATATCTTATCTTATTTTGTCCTTTTTTTAATTCATTAGGTTACTTTTCCT 1079
consensus_7535#1      ------------------------------------------------------------
                                                                                  

consensus_7535#0      GTAGAAACTATAATATGTTATTGTATTTGTAATTAGATATT 1120
consensus_7535#1      -----------------------------------------