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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7537#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 544 fasta sequence
[TGCACATAGTAGGTCTATTCATGTGGCTCANTACAGTCGGAAAGTATCCAATTGTAATAATTCCGGGTGATGGAGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACCGTGGCCCGATGATTGAGTCATTGCGTCTAGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATGCGCCTGATTGAGGAAACTTACCAAAATGGTGGAAACCGGTCTGTTGTTTTGCTTGGCCATAGTTTGGGGGCTAAATACGGTATGTACTTCTTAAAGTCAATGAAGAAAAG]
[+] EMBL CD127538 [TGCACATAGTAGGTCTATTCATGTGGCTCANTACAGTCGGAAAGTATCCAATTGTAATAATTCCGGGTGATGGAGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACCGTGGCCCGATGATTGAGTCATTGCGTCTAGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATGCGCCTGATTGAGGAAACTTACCAAAATGGTGGAAACCGGTCTGTTGTTTTGCTTGGCCATAGTTTGGGGGCTAAATACGGTATGTACTTCTTAAAGTCAATGAAGAAAAG]
[+] EMBL CD127075 [ CTTTGTTTCCAACTGGACTATTCNCGGCGCACCCTTCNATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATGCGCCTGATTGAGGAAACTTACCAAAATGGTGGAAACCGGTCTGTTGTTTTGCTTGGCCATAGTTTGGGGGCTAAATACGGTATGTACTTCTTAAAGTCAATG ]
consensusID : consensus_7537#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 521 fasta sequence
[TGTCCTTCAGGTTGTTTGCGGCGATAATCAGGTGATATTTCGGTTATGATAACCATATGGGCCACTTACTCTGGACATGCATTATTTGCTTCTTCTTTTCTATTCATGTGGCTCATATACAGTCGGAAAAGTATCCAATTGTAATAATTCCGGGTGATGG-AGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGGCCCGATGATTGAGTCATTGCGTCTTGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATG]
[+] EMBL CD097765 [TGTCCTTCAGGTTGTTTGCGGCGATAATCAGGTGATATTTCGGTTATGATAACCATATGGGCCACTTACTCTGGACATGCATTATTTGCTTCTTCTTTTCTATTCATGTGGCTCATATACAGTCGGAAAAGTATCCAATTGTAATAATTCCGGGTGATGG AGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGGCCCGATGATTGAGTCATTGCGTCTTGATACTTTCTTT ]
[+] EMBL CD083842 [ gGGTGATATTTCGGTTATGATAACCATATGGGCCACTTACTCTGGACATGCATTATTTGCTTCTTCTTTTCTATTCATGTGGCTCATATACAGTCGGAAAAGTATCCAATTGTAATAATTCCGGGTGATGG AGGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGGCCCGATGATTGAGTCATTGCGTCTTGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGTAAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATG]
[+] EMBL CD112710 [ TTGTAATAATTCCGGGTGATGGCATGGTGTCAGGCGTATAGCAAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTCGAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCCAGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAAAATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGCGCCGATGATTGAGTCATTGCGTCTTGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCA CCTTCGA TTCCGTAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7537#0 ------------------------------------------------------------
consensus_7537#1 TGTCCTTCAGGTTGTTTGCGGCGATAATCAGGTGATATTTCGGTTATGATAACCATATGG 60
consensus_7537#0 --------------------------TGCACATAGTAGGTCTATTCATGTGGCTCAN-TA 33
consensus_7537#1 GCCACTTACTCTGGACATGCATTATTTGCTTCTTCTTT-TCTATTCATGTGGCTCATATA 119
*** * * ***************** **
consensus_7537#0 CAGTCGGAAA-GTATCCAATTGTAATAATTCCGGGTGATGGAGGGTGTCAGGCGTATAGC 92
consensus_7537#1 CAGTCGGAAAAGTATCCAATTGTAATAATTCCGGGTGATGGAGGGTGTCAGGCGTATAGC 179
********** *************************************************
consensus_7537#0 AAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTC 152
consensus_7537#1 AAGCTAAAAAACTCAACGTCACCTCCTTTTTTAGTATGGATAGATCTACGTTACTTTCTC 239
************************************************************
consensus_7537#0 GAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCC 212
consensus_7537#1 GAACCGGGGAAGCTAAATCAATACTTCGGCTTAGTGTATGATCCAGTCACCAGAAAGTCC 299
************************************************************
consensus_7537#0 AGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAA 272
consensus_7537#1 AGGGATCCTGACATCGCAGAAGTATATTTCCCAGGTTGGGGTGAAACGTGGTCTATCGAA 359
************************************************************
consensus_7537#0 AATCTGGATAGTTATAAACATAGCAGAACTGAATACCGTGGCCCGATGATTGAGTCATTG 332
consensus_7537#1 AATCTGGATAGTTATAAACATAGCAGAACTGAATACTGTGGCCCGATGATTGAGTCATTG 419
************************************ ***********************
consensus_7537#0 CGTCTAGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGT 392
consensus_7537#1 CGTCTTGATCCTTTCTTTGTATCCAACTGGACTATTCGCGGCGCACCCTTCGATTTCCGT 479
***** ******************************************************
consensus_7537#0 AAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATGCGCCTGATTGAGGAAACT 452
consensus_7537#1 AAAGCTCCAAACGAAAATGAGGGCTTTAATGACAAACTTATG------------------ 521
******************************************
consensus_7537#0 TACCAAAATGGTGGAAACCGGTCTGTTGTTTTGCTTGGCCATAGTTTGGGGGCTAAATAC 512
consensus_7537#1 ------------------------------------------------------------
consensus_7537#0 GGTATGTACTTCTTAAAGTCAATGAAGAAAAG 544
consensus_7537#1 --------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||