cluster # 7546

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Schistosoma mansoni
cluster # 7546 cluster # 7546 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7546#0 length = 969 sequences # 2

consensus_7546#1 length = 303 sequences # 2
consensus_7546#2 length = 199 sequences # 1

consensusID : consensus_7546#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 969
fasta sequence

                              [TCCAGGCCAANAATTCGGCACGAGGCCGTTCTCAAATTCTTTTAACTCTTATCTTCTGTCATAATGAATGAGACAATAAACAGTTGAATAAGAATTTATCTTCTTAAAAATCATCGGCGTCATAGTTCTGGTCAATTACTATTATCATTCACATCATCATTATTTGTAAAATCAGTCACTTAACACTGTTGCATTGAAAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTCCATCCGTCTACACTTGCTCATTTTCATTATAAACATCTATATGTATTGTTGACATACAGAGAATCTTTGTATTGTTTTGTCATAATTCTTCATAATAAAGCTTATGCTGCCTTCTTTTCATTTCGTTTTTTTGCACGCTTGCTTTATTATGTCGCTGTATACACCGCAGTATCTTCTCCATATAAATAATACATTTGATTATTACAATCCTTTATACTAAGTTTTGTTCTATGTACTTTCTTTTTGCCTTACTTATTCTGCTTTGGTTAATATAATGGTTATTGTTGCTTGAATACGTGTATTTGTTGCCGATAAGCTCACGAAATGTTTTTCCTCCTTTCTTTTACTATTCATTCTCGGACCCATCATTCTACATCTGTACANTGTGTGTGTTGGCATGTGTCACATTCTATTTCATATTGGCGATAGTAGTAGTAATGATTGTTTTTATTTTTTAACTTAGATTTCTTTATTTTTTGGGAGGGAGAGAGATTATCAATAACTAGTCGCTTTTCATTATGCATCATTGTACACTTCTTTCTACATGTACTTATTTACTTGTTNCACTGAAAAGTCGTTGTTTCTGCTGCGAGTGTGTCCTACTCGTTACTACTCCAGTGTAGTATACCACTGCACTCTATTTGAATGGGGTNTTATTTTTTCTCATTACCATTGTGTACTTCAAAGACCCATTTTACAATCTTTAAACTACGGATGTTATTACCTATTACGAA]

[+] EMBL CD080116             [TCCAGGCCAANAATTCGGCACGAGGCCGTTCTCAAATTCTTTTAACTCTTATCTTCTGTCATAATGAATGAGACAATAAACAGTTGAATAAGAATTTATCTTCTTAAAAATCATCGGCGTCATAGTTCTGGTCAATTACTATTATCATTCACATCATCATTATTTGTAAAATCAGTCACTTAACACTGTTGCATTGAAAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTCCATCCGTCTACACTTGCTCATTTTCATTATAAACATCTATATGTATTGTTGACATACAGAGAATCTTTGTATTGTTTTGTCATAATTCTTCATAATAAAGCTTATGCTGCCTTCTTTTCATTTCGTTTTTTTGCACGCTTGCTTTATTATGTCGCTGTATACACCGCAGTATCTTCTCCATATAAATAATACATTTGATTATTACAATCCTTTATACTAAGTTTTGTTCTATGTACTTTCTTTTTGCCTTACTTATTCTGCTTTGGTTAATATAATGGTTATTGTTGCTTGAATACGTGTATTTGTTGCCGATAAGCTCACGAAATGTTTTTCCTCCTTTCTTTTACTATTCATTCTCGGACCCATCATTCTACATCTGTACANTGTGTGTGTTGGCATGTGTCACATTCTATTTCATATTGGCGATAGTAGTAGTAATGATTGTTTTTATTTTTTAACTTAGATTTCTTTATTTTTTGGGAGGGAGAGAGATTATCAATAACTAGTCGCTTTTCATTATGCATCATTGTACACTTCTTTCTACATGTACTTATTTACTTGTTNCACTGAAAAGTCGTTGTTTCTGCTGCGAGTGTGTCCTACTCGTTACTACTCCAGTGTAGTATACCACTGCACTCTATTTGAATGGGGTNTTATTTTTTCTCATTACCATTGTGTACTTCAAAGACCCATTTTACAATCTTTAAACTACGGATGTTATTACCTATTACGAA]
[-] EMBL CD179020             [                                                                                                                               CTGGTCAATTACTATTATCATTCACATCATCATTATTTGTAAAATCAGTCACTTAACACTGTTGCATTGAAAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTCCATCCGTCTACACTTGCTCATTTTCATTATAAACATCTATATGTATTGTTGACATACAGAGAATCTTTGTATTGTTTTGTCATAATTCTTCATAATAAAGCTTATGCTGCCTTCTTTTCATTTCGTTTTTTTGCACGCTTGCTTTATTATGTCGCTGTATACGCCGCAGTATCTTCTCCATATAAATAATACATTTGATTATTACAATCCTTTATACTAAGTTTTGTTCTATGTACTTTCTTTTTGCCTTACTTATTCTGCTTTGGTTAATATAATGGTTATTGTTGCTTGAATACGTGTATTTGTTGCCGATAAGCTCACGAAAT                                                                                                                                                                                                                                                                                                                                                                                                                        ]




>consensus_7546#0
TCCAGGCCAANAATTCGGCACGAGGCCGTTCTCAAATTCTTTTAACTCTTATCTTCTGTC
ATAATGAATGAGACAATAAACAGTTGAATAAGAATTTATCTTCTTAAAAATCATCGGCGT
CATAGTTCTGGTCAATTACTATTATCATTCACATCATCATTATTTGTAAAATCAGTCACT
TAACACTGTTGCATTGAAAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTCCATCC
GTCTACACTTGCTCATTTTCATTATAAACATCTATATGTATTGTTGACATACAGAGAATC
TTTGTATTGTTTTGTCATAATTCTTCATAATAAAGCTTATGCTGCCTTCTTTTCATTTCG
TTTTTTTGCACGCTTGCTTTATTATGTCGCTGTATACACCGCAGTATCTTCTCCATATAA
ATAATACATTTGATTATTACAATCCTTTATACTAAGTTTTGTTCTATGTACTTTCTTTTT
GCCTTACTTATTCTGCTTTGGTTAATATAATGGTTATTGTTGCTTGAATACGTGTATTTG
TTGCCGATAAGCTCACGAAATGTTTTTCCTCCTTTCTTTTACTATTCATTCTCGGACCCA
TCATTCTACATCTGTACANTGTGTGTGTTGGCATGTGTCACATTCTATTTCATATTGGCG
ATAGTAGTAGTAATGATTGTTTTTATTTTTTAACTTAGATTTCTTTATTTTTTGGGAGGG
AGAGAGATTATCAATAACTAGTCGCTTTTCATTATGCATCATTGTACACTTCTTTCTACA
TGTACTTATTTACTTGTTNCACTGAAAAGTCGTTGTTTCTGCTGCGAGTGTGTCCTACTC
GTTACTACTCCAGTGTAGTATACCACTGCACTCTATTTGAATGGGGTNTTATTTTTTCTC
ATTACCATTGTGTACTTCAAAGACCCATTTTACAATCTTTAAACTACGGATGTTATTACC
TATTACGAA

consensusID : consensus_7546#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 303
fasta sequence

                              [GTGAGTGTATATCGTTAACACCTGTACCATCAGCAAACCTAGTCTTAATGAATTAATGCAAAGAAAGTAGTTATATTCACCGTTCTCAAATTCTTTTAACTCTTATCTTCTGTCATAATGAATGAGACAATAAACAGTTGAATAAGAATTTATCTTCTTAAAAATCATCGGCGTCATAGTTCTGGTCAATTACTATTATCATTCACATCATCATTA-TTGTAAAATCAGTCACTTAACACTGTTGCATTGATAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTTTCATCCGTCTACACT]

[-] EMBL CD139090             [GTGAGTGTATATCGTTAACACCTGTACCATCAGCAAACCTAGTCTTAATGAATTAATGCAAAGAAAGTAGTTATATTCACCGTTCTCAAATTCTTTTAACTCTTATCTTCTGTCATAATGAATGAGACAATAAACAGTTGAATAAGAATTTATCTTCTTAAAAATCATCGGCGTCATAGTTCTGGTCAATTACTATTATCATTCACATCATCATTA TTGTAAAATCAGTCACTTAACACTGTTGCATTGATAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTTTCATCCGTCTACACT]
[-] EMBL CD139197             [GTGAGTGTATATCGTTAACACCTGTACCATCAGCAAACCTAGTCTTAATGAATTAATGCAAAGAAAGTAGTTATATTCACCGTTCTCAAATTCTTTTAACTCTTATCTTCTGTCATAATGAATGAGACAATAAACAGTTGAATAAGAATTTATCTTCTTAAAAATCATCGGCGTCATAGTTCTGGTCAATTACTATTATCATTCACATCATCATTATTTGTAAAATCAGTCACTTAACACTGTTGCATTGATAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTTTC             ]




>consensus_7546#1
GTGAGTGTATATCGTTAACACCTGTACCATCAGCAAACCTAGTCTTAATGAATTAATGCA
AAGAAAGTAGTTATATTCACCGTTCTCAAATTCTTTTAACTCTTATCTTCTGTCATAATG
AATGAGACAATAAACAGTTGAATAAGAATTTATCTTCTTAAAAATCATCGGCGTCATAGT
TCTGGTCAATTACTATTATCATTCACATCATCATTATTGTAAAATCAGTCACTTAACACT
GTTGCATTGATAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTTTCATCCGTCTAC
ACT

consensusID : consensus_7546#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [ACTAGTCGCTTTTCATTATGCATCATTGTACACTTCTTTCTACCATGTACTTATTTACTTGTTTCAACTGAAGGTCGTTGTTTTCTGCTGCGAGTGTTGTCACTACATCGTTTACCTACTACCAAGTGTAAGTATTAGACACTGACAGCTTTTACTTTGTAATGGTGTTTTTTATTTTTTTTCTTCAATTTACCATTTG]

[-] EMBL CD135919             [ACTAGTCGCTTTTCATTATGCATCATTGTACACTTCTTTCTACCATGTACTTATTTACTTGTTTCAACTGAAGGTCGTTGTTTTCTGCTGCGAGTGTTGTCACTACATCGTTTACCTACTACCAAGTGTAAGTATTAGACACTGACAGCTTTTACTTTGTAATGGTGTTTTTTATTTTTTTTCTTCAATTTACCATTTG]




>consensus_7546#2
ACTAGTCGCTTTTCATTATGCATCATTGTACACTTCTTTCTACCATGTACTTATTTACTT
GTTTCAACTGAAGGTCGTTGTTTTCTGCTGCGAGTGTTGTCACTACATCGTTTACCTACT
ACCAAGTGTAAGTATTAGACACTGACAGCTTTTACTTTGTAATGGTGTTTTTTATTTTTT
TTCTTCAATTTACCATTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7546#0      TCCAGGCCAANAATTCGGCACGAGGCCGTTCTCAAATTCTTTTAACTCTTATCTTCTGTC 60
consensus_7546#2      ------------------------------------------------------------
consensus_7546#1      ------------------------------------------------------------
                                                                                  

consensus_7546#0      ATAATGAATGAGACAATAAACAGTTGAATAAGAATTTATCTTCTTAAAAATCATCGGCGT 120
consensus_7546#2      ------------------------------------------------------------
consensus_7546#1      ------------------------------------------------------------
                                                                                  

consensus_7546#0      CATAGTTCTGGTCAATTACTATTATCATTCACATCATCATTATTTGTAAAATCAGTCACT 180
consensus_7546#2      ------------------------------------------------------------
consensus_7546#1      ------------------------------------------------------------
                                                                                  

consensus_7546#0      TAACACTGTTGCATTGAAAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTCCATCC 240
consensus_7546#2      ------------------------------------------------------------
consensus_7546#1      ------------------------------------------------------------
                                                                                  

consensus_7546#0      GTCTACACTTGCTCATTTTCATTATAAACATCTATATGTATTGTTGACATACAGAGAATC 300
consensus_7546#2      ------------------------------------------------------------
consensus_7546#1      ------------------------------------------------------------
                                                                                  

consensus_7546#0      TTTGTATTGTTTTGTCATAATTCTTCATAATAAAGCTTATGCTGCCTTCTTTTCATTTCG 360
consensus_7546#2      ------------------------------------------------------------
consensus_7546#1      ------------------------------------------------------------
                                                                                  

consensus_7546#0      TTTTTTTGCACGCTTGCTTTATTATGTCGCTGTATACACCGCAGTATCTTCTCCATATAA 420
consensus_7546#2      ------------------------------------------------------------
consensus_7546#1      ------------------------------------------------------------
                                                                                  

consensus_7546#0      ATAATACATTTGATTATTACAATCCTTTATACTAAGTTTTGTTCTATGTACTTTCTTTTT 480
consensus_7546#2      ------------------------------------------------------------
consensus_7546#1      ------------------------------------------------------------
                                                                                  

consensus_7546#0      GCCTTACTTATTCTGCTTTGGTTAATATAATGGTTATTGTTGCTTGAATACGTGTATTTG 540
consensus_7546#2      ------------------------------------------------------------
consensus_7546#1      ------------------------------------------------------------
                                                                                  

consensus_7546#0      TTGCCGATAAGCTCACGAAATGTTTTTCCTCCTTTCTTTTACTATTCATTCTCGGACCCA 600
consensus_7546#2      ------------------------------------------------------------
consensus_7546#1      ------------------------------------------------------------
                                                                                  

consensus_7546#0      TCATTCTACATCTGTACANTGTGTGTGTTGGCATGTGTCACATTCTATTTCATATTGGCG 660
consensus_7546#2      ------------------------------------------------------------
consensus_7546#1      ------------------------------------GTGAGTGTATATCGTTAACACCTG 24
                                                                                  

consensus_7546#0      ATAGTAGTAGTAATGATTGTTTTTATTTTTTAACTTAGATTTCTTTATTTTTTGGGAGGG 720
consensus_7546#2      ------------------------------------------------------------
consensus_7546#1      TACCATCAGCAAACCTAGTCTTAATGAATTAATGCAAAGAAAGTAGTTATATTCACCGTT 84
                                                                                  

consensus_7546#0      AGAGAGATTATCAATAACTAGTCGCTTTTCATTATGCATCATTGTACACTTCTTTCTAC- 779
consensus_7546#2      ----------------ACTAGTCGCTTTTCATTATGCATCATTGTACACTTCTTTCTACC 44
consensus_7546#1      CTCAAATTCTTTTAACTCTTATCTTCTGTCATAATGAATGAGACAATAAACAGTTGAAT- 143
                                       **  **   * **** *** ** *    * *     **  *  

consensus_7546#0      ATGTACTTATTTACTTGTTNCACTGAAAAGTCGTTGTTT-CTGCTGCGAGTGTGTCCTAC 838
consensus_7546#2      ATGTACTTATTTACTTGTTTCAACTGAAGGTCGTTGTTTTCTGCTGCGAGTGTTGTCACT 104
consensus_7546#1      AAGAATTTATCTTCTTAAAAATCATCGGCGTCATAGTTCTGGTCAATTACTATTATCATT 203
                      * * * **** * ***             *** * ***     *    * * *   *   

consensus_7546#0      -TCGTTACTACTCCAGTGTAGTATACCACTGCACTCTATTTGAATGGGGTNTTATTTTTT 897
consensus_7546#2      -ACATCGTTTACCTACTACCAAGTGTAA--GTATTAGACACTGACAGC-TTTTACTTTGT 160
consensus_7546#1      CACATCATCA--TTATTGTAAAATCAGT---CACTTAACACTGTTGCATTGATAGCTTAC 258
                        * *         * *      *        * *  *           *  **  **  

consensus_7546#0      CTC-ATTACCATTGTG-----TACTTCAAAGACCCATTTTACAATCTTTAAACTACGGAT 951
consensus_7546#2      ----AATGGTGTTTTT-----TATTTTTTTTCTTCAATTTACCATTTG------------ 199
consensus_7546#1      CTTTAATTGTGTTCCTACCTGTTTTTTTTTTCATCCGTCTACACT--------------- 303
                          * *    **        *  **        *  * ***  *               

consensus_7546#0      GTTATTACCTATTACGAA 969
consensus_7546#2      ------------------
consensus_7546#1      ------------------