cluster # 7560

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Schistosoma mansoni
cluster # 7560 cluster # 7560 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7560#0 length = 955 sequences # 4

consensus_7560#1 length = 342 sequences # 1

consensusID : consensus_7560#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 955
fasta sequence

                              [GAGGCCANATTCGGCACGAGGACATATCAAAAATGATATAAAAGTATTTCAACGTTCAAATGGATTCCTTATTCATGGTAGTTCAGGTGTGTTAAGTTATATGAATGCTTTGAAACATGTTCAATGGTTATGTAAAGATGAACAAAATAACATAAGTAGACGATGTTTTAATGTATCATGTGAAGCTATGATTCAAGTCTCTGAAAAGGATCAATTCATGATGAGAAAAGTGAATAGCAATGCCATACAATCTGAATTTTATATTTATCATGGAAAATCATCACAGCCATCAGTTACTCCATCAAATGTACAACAGCATTCAACAAGATTATCTTTGAGAGGAAAACCTCGTCTGGTAAATAAAAGGGATATAAATAGTCTTCAGCCAGCTATGCATTTACAAAATAAAACAAACACTTGGAG-TA-CGGGTATTTTGCTACTTATCAGCTCTTCTGTTTTGGCAGTTCTACTAATACTGTTTGTTGCTATCAAACGAATTCACCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGCTCAAAATCTTCAAATGACACCATTTGATATCAATGCATTAAAACAACAAATGAATGAATATCAGGATGGAAGAAAGTCAGAAACTAGTGCTGAAAAATTAAGAAATTCAAGATCGAACGACTGCAATTCTCAAACGATAATAAATCATCATCAAC-ACATGAGAATGAACAAAAAAAACAACCATTACGAATTACCCCGAATCCATTTGTCAATCAATCCGATATGAAAGAATACGAAGCAAAAACTATTTTGTTGGATGAAAAACGTTATGATGCCACTTTGAATATGTCATCATCAATATATAATAATAATAATAATAAAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGCCATGCAGCTGCATTACCGTACTGCGTA]

[+] EMBL CD080768             [GAGGCCANATTCGGCACGAGGACATATCAAAAATGATATAAAAGTATTTCAACGTTCAAATGGATTCCTTATTCATGGTAGTTCAGGTGTGTTAAGTTATATGAATGCTTTGAAACATGTTCAATGGTTATGTAAAGATGAACAAAATAACATAAGTAGACGATGTTTTAATGTATCATGTGAAGCTATGATTCAAGTCTCTGAAAAGGATCAATTCATGATGAGAAAAGTGAATAGCAATGCCATACAATCTGAATTTTATATTTATCATGGAAAATCATCACAGCCATCAGTTACTCCATCAAATGTACAACAGCATTCAACAAGATTATCTTTGAGAGGAAAACCTCGTCTGGTAAATAAAAGGGATATAAATAGTCTTCAGCCAGCTATGCATTTACAAAATAAAACAAACACTTGGAG TA CGGGTATTTTGCTACTTATCAGCTCTTCTGTTTTGGCAGTTCTACTAATACTGTTTGTTGCTATCAAACGAATTCACCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGCTCAAAATCTTCAAATGACACCATTTGATATCAATGCATTAAAACAACAAATGAATGAATATCAGGATGGAAGAAAGTCAGAAACTAGTGCTGAAAAATTAAGAAATTCAAGATCGAACGACTGGCATTCTCAAACGATAATAAATCATCATCAAC ACATGAGAATGAA                                                                                                                                                                                                                                                       ]
[+] EMBL CD096431             [                                                                                                   TATGAATGCTTTGAAACATGTTCAGTGGTTATGTAAAGATGAACAAAATAACATAAGTAGACGATGTTTTAATGTATCATGTGAAGCTATGATTCAAGTCTCTGAAAAGGATCAATTCATGATGAGAAAAGTGAATAGCAATGCCATACAATCTGAATTTTATATTTATCATGGAAAATCATCACAGCCATCAGTTACTCCATCAAATGTACAACAGCATTCAACAAGATTATCTTTGAGAGGAAAACCTCGTCTGGTAAATAAAAGGGATATAAACAGTCTTCAGCCAGCTATGCATTTACAAAATAAAACAAACACTTGGAG TA CGGGTATTTTGCTACTTATCAGCTCTTCTGTTTTGGCAGTTCTACTAATACTGTTTGTTGCTATCAAACGAATTCACCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGCTCAAAATCTTCAAATGACACCATTTGATATCAATGCATTAAAACAACAAATGAATGAATATCAGGATGGAAGAAAGTCAGAAACTAGTGCTG AAAATTAAGAAATTCAAGATCGAACGACTGCAATTCTCAGACGATANTANATCATCATC                                                                                                                                                                                                                                                                        ]
[-] EMBL CD069611             [                                                                                                                                                                CGATGTTTTAATGTATCATGTGAAGCTATGATTCAAGTCTCTGAAAAGGACCAATTCATGATGAGAAAAGTGAATAGCAATGCCATACAATCTGAATTTTATATTTATCATGGAAAATCATCACAGCCATCAGTTACTCCATCAAATGTACAACAGCATTCAACAAGATTATCTTTGAGAGGAAAACCTCGTCTGGTAAATAAAAGGGATATAAATAGTCTTCAGCCAGCTATGCATTTACAAAATAAAACAAACACTTGGAGCTACCGGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL AI067765             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GCTGAAAAATTAAGAAATTCAAGATCGAACGACTGCAATTCTCAAACGATAATAAATCATCATCAACAACATGAGAATGAACAAAAAAAACAACCATTACGAATTACCCCGAATCCATTTGTCAATCAATCCGATATGAAAGAATACGAAGCAAAAACTATTTTGTTGGATGAAAAACGTTATGATGCCACTTTGAATATGTCATCATCAATATATAATAATAATAATAATAAAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGCCATGCAGCTGCATTACCGTACTGCGTA]




>consensus_7560#0
GAGGCCANATTCGGCACGAGGACATATCAAAAATGATATAAAAGTATTTCAACGTTCAAA
TGGATTCCTTATTCATGGTAGTTCAGGTGTGTTAAGTTATATGAATGCTTTGAAACATGT
TCAATGGTTATGTAAAGATGAACAAAATAACATAAGTAGACGATGTTTTAATGTATCATG
TGAAGCTATGATTCAAGTCTCTGAAAAGGATCAATTCATGATGAGAAAAGTGAATAGCAA
TGCCATACAATCTGAATTTTATATTTATCATGGAAAATCATCACAGCCATCAGTTACTCC
ATCAAATGTACAACAGCATTCAACAAGATTATCTTTGAGAGGAAAACCTCGTCTGGTAAA
TAAAAGGGATATAAATAGTCTTCAGCCAGCTATGCATTTACAAAATAAAACAAACACTTG
GAGTACGGGTATTTTGCTACTTATCAGCTCTTCTGTTTTGGCAGTTCTACTAATACTGTT
TGTTGCTATCAAACGAATTCACCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGC
TCAAAATCTTCAAATGACACCATTTGATATCAATGCATTAAAACAACAAATGAATGAATA
TCAGGATGGAAGAAAGTCAGAAACTAGTGCTGAAAAATTAAGAAATTCAAGATCGAACGA
CTGCAATTCTCAAACGATAATAAATCATCATCAACACATGAGAATGAACAAAAAAAACAA
CCATTACGAATTACCCCGAATCCATTTGTCAATCAATCCGATATGAAAGAATACGAAGCA
AAAACTATTTTGTTGGATGAAAAACGTTATGATGCCACTTTGAATATGTCATCATCAATA
TATAATAATAATAATAATAAAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAACAGCCATGCAGCTGCATTACCGTACTGCGTA

consensusID : consensus_7560#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [GGAATTCCCCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGGTCAAAATGTTCAAATGACCCCATTTGATATCAATGCATTAAAACAACAAATGAATGGATATCAGGGTGGAAGAAAGTCAGAAACTAGTGTTGAAAAATTAAGAAATTCAAGATCGAAGGGCTGCAATTTTCAAAGGGTAATAAATCATCATCAACAACATGGGAATGGACAAAAAAAACAACCATTAGGAATTACCCCGAAACCATTTGTCAATCAAACCGATTTGAAAGAATACGAAGCAAAAAATATTTTGTTGGGTGAAAAACGTTTTGATTCCACTTTGAAAATGTCATCA]

[-] EMBL AI067896             [GGAATTCCCCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGGTCAAAATGTTCAAATGACCCCATTTGATATCAATGCATTAAAACAACAAATGAATGGATATCAGGGTGGAAGAAAGTCAGAAACTAGTGTTGAAAAATTAAGAAATTCAAGATCGAAGGGCTGCAATTTTCAAAGGGTAATAAATCATCATCAACAACATGGGAATGGACAAAAAAAACAACCATTAGGAATTACCCCGAAACCATTTGTCAATCAAACCGATTTGAAAGAATACGAAGCAAAAAATATTTTGTTGGGTGAAAAACGTTTTGATTCCACTTTGAAAATGTCATCA]




>consensus_7560#1
GGAATTCCCCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGGTCAAAATGTTCAA
ATGACCCCATTTGATATCAATGCATTAAAACAACAAATGAATGGATATCAGGGTGGAAGA
AAGTCAGAAACTAGTGTTGAAAAATTAAGAAATTCAAGATCGAAGGGCTGCAATTTTCAA
AGGGTAATAAATCATCATCAACAACATGGGAATGGACAAAAAAAACAACCATTAGGAATT
ACCCCGAAACCATTTGTCAATCAAACCGATTTGAAAGAATACGAAGCAAAAAATATTTTG
TTGGGTGAAAAACGTTTTGATTCCACTTTGAAAATGTCATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7560#0      GAGGCCANATTCGGCACGAGGACATATCAAAAATGATATAAAAGTATTTCAACGTTCAAA 60
consensus_7560#1      ------------------------------------------------------------
                                                                                  

consensus_7560#0      TGGATTCCTTATTCATGGTAGTTCAGGTGTGTTAAGTTATATGAATGCTTTGAAACATGT 120
consensus_7560#1      ------------------------------------------------------------
                                                                                  

consensus_7560#0      TCAATGGTTATGTAAAGATGAACAAAATAACATAAGTAGACGATGTTTTAATGTATCATG 180
consensus_7560#1      ------------------------------------------------------------
                                                                                  

consensus_7560#0      TGAAGCTATGATTCAAGTCTCTGAAAAGGATCAATTCATGATGAGAAAAGTGAATAGCAA 240
consensus_7560#1      ------------------------------------------------------------
                                                                                  

consensus_7560#0      TGCCATACAATCTGAATTTTATATTTATCATGGAAAATCATCACAGCCATCAGTTACTCC 300
consensus_7560#1      ------------------------------------------------------------
                                                                                  

consensus_7560#0      ATCAAATGTACAACAGCATTCAACAAGATTATCTTTGAGAGGAAAACCTCGTCTGGTAAA 360
consensus_7560#1      ------------------------------------------------------------
                                                                                  

consensus_7560#0      TAAAAGGGATATAAATAGTCTTCAGCCAGCTATGCATTTACAAAATAAAACAAACACTTG 420
consensus_7560#1      ------------------------------------------------------------
                                                                                  

consensus_7560#0      GAGTACGGGTATTTTGCTACTTATCAGCTCTTCTGTTTTGGCAGTTCTACTAATACTGTT 480
consensus_7560#1      ------------------------------------------------------------
                                                                                  

consensus_7560#0      TGTTGCTATCAAACGAATTCACCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGC 540
consensus_7560#1      -------------GGAATTCCCCGTGTTCATTTAAAATCTAATCATTTTGAATTACAAGG 47
                                    ****** ************************************** 

consensus_7560#0      TCAAAATCTTCAAATGACACCATTTGATATCAATGCATTAAAACAACAAATGAATGAATA 600
consensus_7560#1      TCAAAATGTTCAAATGACCCCATTTGATATCAATGCATTAAAACAACAAATGAATGGATA 107
                      ******* ********** ************************************* ***

consensus_7560#0      TCAGGATGGAAGAAAGTCAGAAACTAGTGCTGAAAAATTAAGAAATTCAAGATCGAACGA 660
consensus_7560#1      TCAGGGTGGAAGAAAGTCAGAAACTAGTGTTGAAAAATTAAGAAATTCAAGATCGAAGGG 167
                      ***** *********************** *************************** * 

consensus_7560#0      CTGCAATTCTCAAACGATAATAAATCATCATCAACA-CATGAGAATGAACAAAAAAAACA 719
consensus_7560#1      CTGCAATTTTCAAAGGGTAATAAATCATCATCAACAACATGGGAATGGACAAAAAAAACA 227
                      ******** ***** * ******************* **** ***** ************

consensus_7560#0      ACCATTACGAATTACCCCGAATCCATTTGTCAATCAATCCGATATGAAAGAATACGAAGC 779
consensus_7560#1      ACCATTAGGAATTACCCCGAAACCATTTGTCAATCAAACCGATTTGAAAGAATACGAAGC 287
                      ******* ************* *************** ***** ****************

consensus_7560#0      AAAAACTATTTTGTTGGATGAAAAACGTTATGATGCCACTTTGAATATGTCATCATCAAT 839
consensus_7560#1      AAAAAATATTTTGTTGGGTGAAAAACGTTTTGATTCCACTTTGAAAATGTCATCA----- 342
                      ***** *********** *********** **** ********** *********     

consensus_7560#0      ATATAATAATAATAATAATAAAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 899
consensus_7560#1      ------------------------------------------------------------
                                                                                  

consensus_7560#0      AAAAAAAAAAAAAAAAAAAAAAAAACAGCCATGCAGCTGCATTACCGTACTGCGTA 955
consensus_7560#1      --------------------------------------------------------