cluster # 7594

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Schistosoma mansoni
cluster # 7594 cluster # 7594 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7594#0 length = 607 sequences # 2
consensus_7594#1 length = 454 sequences # 1

consensus_7594#2 length = 432 sequences # 1
consensus_7594#3 length = 417 sequences # 1

consensusID : consensus_7594#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 607
fasta sequence

                              [AAGTTAAATCATGTAGGAGGCAGTCAATTGAACTAATAGTAGAATACACATTATTAAAATGTGTCACCAAAACTATAACCACTGNCTCTACTATTTAAACTTTGTCGACTTCCATGAAAACTGAATTGTTCAAAGTATGGTCCATCGACAATTCGATTCATATTATCTTCATTATCGTTTGGAGGAGTCAGATCAACTGATGTATCCTTGAATTCATCTGGGCCATATTTTGTGTCTTTTTCATCGACCACATCTGGTTTCCATGGTGGTTGAATATCTTTTCTTATTAAACGGTCCCAATCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATTCCACCACCTAGTCGACTTGTTGGATCTTTAATTAAAAGTCTAGAC-AGATATCTTGGGCTGGGTGTGAAAGACGAGCTGGGAAGGGGACATTTTCTTGCAGTATTAACTCAAATAGGACTTCATG-CCACTTGAAT-AAATGGT-AACG-CCACACATCATTTTCGTGCCGATT-CTGCAGCCGGGGSCCCTCCAATCAACTGAACGCCCATAATCGTTATCCAACAGAACTTCAGGTGCTAAATATTCCCGTGTACCACAN]

[+] EMBL SMAA69931            [AAGTTAAATCATGTAGGAGGCAGTCAATTGAACTAATAGTAGAATACACATTATTAAAATGTGTCACCAAAACTATAACCACTGNCTCTACTATTTAAACTTTGTCGACTTCCATGAAAACTGAATTGTTCAAAGTATGGTCCATCGACAATTCGATTCATATTATCTTCATTATCGTTTGGAGGAGTCAGATCAACTGATGTATCCTTGAATTCATCTGGGCCATATTTTGTGTCTTTTTCATCGACCACATCTGGTTTCCATGGTGGTTGAATATCTTTTCTTATTAAACGGTCCCAATCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATTCCACCACCTAGTCGACTTGTTGGATCTTTAATTAAAAGTCTAGAC AGATATCTTGGGCTGGGTGTGAAAGACGAGCTGGGAAGGGGACATTTTCTTGCAGTATTAACTCAAATAGGACTTCATG CCACTTGAAT AAATGGT AACG CCACACATCATTTTCGTGCCGATT CTGCAGCCGGGGSCCCT                                                                      ]
[+] EMBL CD155923             [                                                                                                    TTTGTCGACTTCCATGAAAACTGAATTGTTCAAAGTATGGTCCATCGACAATTCGATTCATATTATCTTCATTATCGTTTGGAGGAGTCAGATCAACTGATGTATCCTTGAATTCATCTGGGACATATTTTGTGTCTTTTTCATCGACCACATCTGGTTTCCATGGTGGTTGAATATCTTTTCTTATTAAACGATCCCAATCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATTCCACCACCTAGTCGACTTGGTGGATTCTTAATTAAAAGTCTAGACAAGATATCTTGGGCTGGGTGTGAAAGACGAGCTGGGAAGGAGACATTTTCTTGCAGTATTAACTCAAATAAGACTTCATGATCACTTGAATAAAATGGTAAACGTCCACACATCA TTTCATAC  ATTACTACA CCAAGGCCCCACCAATCAACTGAACGCCCATAATCGTTATCCAACAGAACTTCAGGTGCTAAATATTCCCGTGTACCACAN]




>consensus_7594#0
AAGTTAAATCATGTAGGAGGCAGTCAATTGAACTAATAGTAGAATACACATTATTAAAAT
GTGTCACCAAAACTATAACCACTGNCTCTACTATTTAAACTTTGTCGACTTCCATGAAAA
CTGAATTGTTCAAAGTATGGTCCATCGACAATTCGATTCATATTATCTTCATTATCGTTT
GGAGGAGTCAGATCAACTGATGTATCCTTGAATTCATCTGGGCCATATTTTGTGTCTTTT
TCATCGACCACATCTGGTTTCCATGGTGGTTGAATATCTTTTCTTATTAAACGGTCCCAA
TCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATTCCACCACCT
AGTCGACTTGTTGGATCTTTAATTAAAAGTCTAGACAGATATCTTGGGCTGGGTGTGAAA
GACGAGCTGGGAAGGGGACATTTTCTTGCAGTATTAACTCAAATAGGACTTCATGCCACT
TGAATAAATGGTAACGCCACACATCATTTTCGTGCCGATTCTGCAGCCGGGGSCCCTCCA
ATCAACTGAACGCCCATAATCGTTATCCAACAGAACTTCAGGTGCTAAATATTCCCGTGT
ACCACAN

consensusID : consensus_7594#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [GGCCTCGAGGCCAGAATCGGCACGAGGTAGAGTCAGTGGTTATAGTTTTGGTGACACATTTTAATAATGTGTATTCTACTATTAGTTCAATTGACTGCCTCCTACATGATTTAACTTTCTATGTACAAAAAAGAAGAAGAAATGAAGAGAATCTTATTATAACTCATACTTTTCACATAGATGAATATCTGGACAGATAGAAAACATTGTAGAGCCTGGAATTGCATGTGTGTATATCATCTAGTTCAATGTTTCCGATTATGAAATATGTATAGATTTATTTTCATATTCATTCATTTTCACCTGGTTTTGCTTATTTTTTTTCTTTTCTTTCTTGATATTATGATATAAATTTTATGTGAATTAAATATGTTCGGTTTTAATTGTTCTTAGAGATATGTAATTTTTGTCTACTATTATTTTTCATTGAAACTATTATTATTTCATTGCCTCA]

[+] EMBL CD084024             [GGCCTCGAGGCCAGAATCGGCACGAGGTAGAGTCAGTGGTTATAGTTTTGGTGACACATTTTAATAATGTGTATTCTACTATTAGTTCAATTGACTGCCTCCTACATGATTTAACTTTCTATGTACAAAAAAGAAGAAGAAATGAAGAGAATCTTATTATAACTCATACTTTTCACATAGATGAATATCTGGACAGATAGAAAACATTGTAGAGCCTGGAATTGCATGTGTGTATATCATCTAGTTCAATGTTTCCGATTATGAAATATGTATAGATTTATTTTCATATTCATTCATTTTCACCTGGTTTTGCTTATTTTTTTTCTTTTCTTTCTTGATATTATGATATAAATTTTATGTGAATTAAATATGTTCGGTTTTAATTGTTCTTAGAGATATGTAATTTTTGTCTACTATTATTTTTCATTGAAACTATTATTATTTCATTGCCTCA]




>consensus_7594#1
GGCCTCGAGGCCAGAATCGGCACGAGGTAGAGTCAGTGGTTATAGTTTTGGTGACACATT
TTAATAATGTGTATTCTACTATTAGTTCAATTGACTGCCTCCTACATGATTTAACTTTCT
ATGTACAAAAAAGAAGAAGAAATGAAGAGAATCTTATTATAACTCATACTTTTCACATAG
ATGAATATCTGGACAGATAGAAAACATTGTAGAGCCTGGAATTGCATGTGTGTATATCAT
CTAGTTCAATGTTTCCGATTATGAAATATGTATAGATTTATTTTCATATTCATTCATTTT
CACCTGGTTTTGCTTATTTTTTTTCTTTTCTTTCTTGATATTATGATATAAATTTTATGT
GAATTAAATATGTTCGGTTTTAATTGTTCTTAGAGATATGTAATTTTTGTCTACTATTAT
TTTTCATTGAAACTATTATTATTTCATTGCCTCA

consensusID : consensus_7594#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [TTGTTCAAAGTATGGTCCATCGACAATTCGATTCATATTATCTTCATTATCGTTTGGAGGAGTCAGATCAACTGATGTATCCTTGAATTCATCTGGGACATATTTTGTGTCTTTTTCATCGACCACATCTGGTTTCCATGGTGGTTGAATATCTTTTCTTATTAAACGATCCCAATCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATTCCACCACCTAGTCGACTTGTTGGATCTTTAATTAAAAGTCTAGACAAGATATCTTGGGCTGGGTGTGAAAGACGAGCTGGGAAGGAGACATTTTCCTAAAGTAATAAAAATGGCAAAATATGATATAATCTGAATGACTACTACTGCCAAAATATTTGCATAAACATTAAGATTATTTGTAATAACCTAATTGATACCTAACTACA]

[-] EMBL AI975399             [TTGTTCAAAGTATGGTCCATCGACAATTCGATTCATATTATCTTCATTATCGTTTGGAGGAGTCAGATCAACTGATGTATCCTTGAATTCATCTGGGACATATTTTGTGTCTTTTTCATCGACCACATCTGGTTTCCATGGTGGTTGAATATCTTTTCTTATTAAACGATCCCAATCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATTCCACCACCTAGTCGACTTGTTGGATCTTTAATTAAAAGTCTAGACAAGATATCTTGGGCTGGGTGTGAAAGACGAGCTGGGAAGGAGACATTTTCCTAAAGTAATAAAAATGGCAAAATATGATATAATCTGAATGACTACTACTGCCAAAATATTTGCATAAACATTAAGATTATTTGTAATAACCTAATTGATACCTAACTACA]




>consensus_7594#2
TTGTTCAAAGTATGGTCCATCGACAATTCGATTCATATTATCTTCATTATCGTTTGGAGG
AGTCAGATCAACTGATGTATCCTTGAATTCATCTGGGACATATTTTGTGTCTTTTTCATC
GACCACATCTGGTTTCCATGGTGGTTGAATATCTTTTCTTATTAAACGATCCCAATCGAC
TGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATTCCACCACCTAGTCG
ACTTGTTGGATCTTTAATTAAAAGTCTAGACAAGATATCTTGGGCTGGGTGTGAAAGACG
AGCTGGGAAGGAGACATTTTCCTAAAGTAATAAAAATGGCAAAATATGATATAATCTGAA
TGACTACTACTGCCAAAATATTTGCATAAACATTAAGATTATTTGTAATAACCTAATTGA
TACCTAACTACA

consensusID : consensus_7594#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [TGGATCTTTAATTAAAAGTCTAGACAAGATATCTTGGGCTGGGTGTGANAGACGAGCTGGGAAGGAGACATTTTCTTGCAGTATTAACTCAAATAAGACTTCATGATCACTTGAATAAAATGGTAAACGTCCACACATCATTTCATACATTACTACACCAAGGCCCCACCAATCAACTGAACGCCCATAATCGTTATCCAACAGAACTTCAGGTGCTAAATATTCCGGTGTACCACAAAATGTTTTAGTTGATGCACCATAGTACATATCTTCTTTGCAAAGACCAAAATCAGCGATTTTTATATGACCATCTTTATCCAACAATAAATTTTCCAATTTAAGATCCCTATAAACAACATTCTGGTGATGTAAATAACCTAAAGCCAGAGTAATTTCTGCACCATAAAATTTAGCTCT]

[-] EMBL AI976072             [TGGATCTTTAATTAAAAGTCTAGACAAGATATCTTGGGCTGGGTGTGANAGACGAGCTGGGAAGGAGACATTTTCTTGCAGTATTAACTCAAATAAGACTTCATGATCACTTGAATAAAATGGTAAACGTCCACACATCATTTCATACATTACTACACCAAGGCCCCACCAATCAACTGAACGCCCATAATCGTTATCCAACAGAACTTCAGGTGCTAAATATTCCGGTGTACCACAAAATGTTTTAGTTGATGCACCATAGTACATATCTTCTTTGCAAAGACCAAAATCAGCGATTTTTATATGACCATCTTTATCCAACAATAAATTTTCCAATTTAAGATCCCTATAAACAACATTCTGGTGATGTAAATAACCTAAAGCCAGAGTAATTTCTGCACCATAAAATTTAGCTCT]




>consensus_7594#3
TGGATCTTTAATTAAAAGTCTAGACAAGATATCTTGGGCTGGGTGTGANAGACGAGCTGG
GAAGGAGACATTTTCTTGCAGTATTAACTCAAATAAGACTTCATGATCACTTGAATAAAA
TGGTAAACGTCCACACATCATTTCATACATTACTACACCAAGGCCCCACCAATCAACTGA
ACGCCCATAATCGTTATCCAACAGAACTTCAGGTGCTAAATATTCCGGTGTACCACAAAA
TGTTTTAGTTGATGCACCATAGTACATATCTTCTTTGCAAAGACCAAAATCAGCGATTTT
TATATGACCATCTTTATCCAACAATAAATTTTCCAATTTAAGATCCCTATAAACAACATT
CTGGTGATGTAAATAACCTAAAGCCAGAGTAATTTCTGCACCATAAAATTTAGCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7594#0      AAGTTAAATCATGTAGGAGGCAGTCAATTGAACTAATAGTAGAATACACATTATTAAAAT 60
consensus_7594#2      ------------------------------------------------------------
consensus_7594#3      ------------------------------------------------------------
consensus_7594#1      ------------------------------------------------------------
                                                                                  

consensus_7594#0      GTGTCACCAAAACTATAACCACTGNCTCTACTATTTAAACTTTGTCGACTTCCATGAAAA 120
consensus_7594#2      ------------------------------------------------------------
consensus_7594#3      ------------------------------------------------------------
consensus_7594#1      -------------------------------------------------GGCCTCGAGGC 11
                                                                                  

consensus_7594#0      CTGAATTGTT-CAAAGTATGGTCCATCGACA-ATTCGATTCATATTATCTTCATTATCGT 178
consensus_7594#2      -----TTGTT-CAAAGTATGGTCCATCGACA-ATTCGATTCATATTATCTTCATTATCGT 53
consensus_7594#3      --------------TGGATCTTTAATTAA-A-AGTCTAGACAAGATATCTTGGGCTGGGT 44
consensus_7594#1      CAGAATCGGCACGAGGTAGAGTCAGTGGTTATAGTTTTGGTGACACATTTT-AATAATGT 70
                                     * *   *   *    * * *           ** **       **

consensus_7594#0      TTGGAGGA--GTCAGATCAACTGATGTATCCTTGAA---TTCATCTGGGCCATATTTTGT 233
consensus_7594#2      TTGGAGGA--GTCAGATCAACTGATGTATCCTTGAA---TTCATCTGGGACATATTTTGT 108
consensus_7594#3      GTGANAGACGAGCTGGGAAGGAGACATTTTCTTGCAGTATTAACTCAAATAAGACTTCAT 104
consensus_7594#1      GTATTCTACTATTAGTTCAATTGACTGCCTCCTACA----TGATTTAACTTTCTATGTAC 126
                       *     *      *   *   **      * *  *    * *            *    

consensus_7594#0      GTCTTTTTCATCGACCACATCTGGTTTCCATG-GTGGTTGAATATCTTTTCTTATTAAAC 292
consensus_7594#2      GTCTTTTTCATCGACCACATCTGGTTTCCATG-GTGGTTGAATATCTTTTCTTATTAAAC 167
consensus_7594#3      GATCACTTGAATAAA-ATGGTAAACGTCCACACATCATTTCATACATTACTACACCAAGG 163
consensus_7594#1      AAAAAAGAAGAAGAA-ATGAAGAGAATCTTATTATAACT-CATAC-TTTTCACATAGATG 183
                                   *  *         **      *   *  ***  **     *   *  

consensus_7594#0      GGTC-CCAATCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATT 351
consensus_7594#2      GATC-CCAATCGACTGATGCAAAAAACAAATGTGCCATAACCTCCAAAACATCTTGTATT 226
consensus_7594#3      CCCCACCAATCAACTG------AACGCCCATAATCGTTATCCAACAGAACTTCAGGTGCT 217
consensus_7594#1      AATATCTGGACAGATAG---AAAACATTGTAGAGCCTGGAATTGCATG--TGTGTATATC 238
                           *    *   *       **          *         **          *   

consensus_7594#0      CCACCACCTAGTCGACTTGTTGGATCTTTAATTAAAAGTCTAGACA-GATATCTTGGGCT 410
consensus_7594#2      CCACCACCTAGTCGACTTGTTGGATCTTTAATTAAAAGTCTAGACAAGATATCTTGGGCT 286
consensus_7594#3      AAATATTCCGGTGTACCACAAAATGTTTTAGTTGATGCACCATAGTACATATCTTCTTTG 277
consensus_7594#1      ATCTAGTTCAATGTTTCCGATTATGAAATATGTATAGATTTATTTT-CATAT-TCATTCA 296
                                 *                **  *        *      **** *      

consensus_7594#0      GGGTGTGAAAGACGAGC---TGGGAAGGGGACATTTTCTTGCAGTATTAACTCAAATAGG 467
consensus_7594#2      GGGTGTGAAAGACGAGC---TGGGAAGGAGACATTTTCCTAAAGTAATAAAAATGGCAAA 343
consensus_7594#3      CAAAGACCAAAATCAGCGATTTTTATATGACCATCTTTATCCAACAATAAATTTTCCA-- 335
consensus_7594#1      TTTTCACCTGGTTTTGCTTATTTTTTTTCTTTTCTTTCTTGATATTATGATATAAATTTT 356
                                     **   *              **  *       * *          

consensus_7594#0      ACTTCATGCCACTTGAATAAATGGTA-ACGCCACACATCATTTTCGTGCCGATTCTGCAG 526
consensus_7594#2      ATATGATATAATCTGAATGACTACTA-CTGCCAAA----ATATTTGCATAAACATTAAGA 398
consensus_7594#3      ATTTAAGATCCCTATAAACAACATTC-TGGTGATG-----TAAATAACCTAAAGCCAGAG 389
consensus_7594#1      ATGTGAATTAAATATGTTCGGTTTTAATTGTTCTTAGAGATATGTAATTTTTGTCTACTA 416
                      *  * *                  *    *          *                   

consensus_7594#0      CCGGGGSCCCTCCAATCAACTGAACGCCCATAATCGTTATCCAACAGAACTTCAGGTGCT 586
consensus_7594#2      TTATTTGTAAT--AACCTAATTGATACCTAACTACA------------------------ 432
consensus_7594#3      TAATTTCTGCACCATAAAATTTAGCTCT-------------------------------- 417
consensus_7594#1      TTATTTTTCATTGAAACTATTATTATTTCATTGCCTCA---------------------- 454
                                   *    * *                                       

consensus_7594#0      AAATATTCCCGTGTACCACAN 607
consensus_7594#2      ---------------------
consensus_7594#3      ---------------------
consensus_7594#1      ---------------------