cluster # 7607

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Schistosoma mansoni
cluster # 7607 cluster # 7607 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7607#0 length = 528 sequences # 3

consensus_7607#1 length = 384 sequences # 1
consensus_7607#2 length = 223 sequences # 1

consensusID : consensus_7607#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 528
fasta sequence

                              [CCCAGAATCGGCACGAGGGGCTATTGGGGGATTTCTCTCATCTGTTGCCCTCATAATCCTTCTAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACCGTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAATATGTATTTGTTACTGATCCCCAGTCTGCTACTAGGTTTAGTGGCCAATTACGAATTTTCTTTATATGAGGTACTATGGGCTTTCTCAATTTACTTGGAATCGGTTGCTATCATGCCTCAGTTGTTTATGATTAGCAAAACTGGCGAAGCTGAAACAATCACTTCTCACTACTTATTTGCGTTAGGATCATACCGTGCGTTATATTTGTTCAACTGGATATACCGTTATGTTTTCGATGATTA]

[+] EMBL CD083542             [CCCAGAATCGGCACGAGGGGCTATTGGGGGATTTCTCTCATCTGTTGCCCTCATAATCCTTCTAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACCGTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAATATGTATTTGTTACTGATCCCCAGTCTGCTACTAGGTTTAGTGGCCAATTACGAATTTTCTTTATATGAGGTACTATGGGCTTTCTCAATTTACTTGGAATCGGTTGCTATCATGCCTCAGTTGTTTATGATTAGCAAAACTGGCGAAGCTGAAACAATCACTTCTCACTACTTATTTGCGTTAGGATCATACCGTGCGTTATATTTGTTCAACTGGATATACCGTTATGTTTTCGATGATTA]
[+] EMBL CD158110             [                                                               AAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACCGTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAATATGTATTTGTTACTGATCCCCAGTCTGCTACTAGGTTTAGTGGCCAATTACGAATTTTCTTTA                                                                                                                                                                                   ]
[+] EMBL CD077509             [                                                                                                                      CTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACCGTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAATATGTATTTGTTACTGATCCCCAGTCTGCTACTAGGTTTAGTGGCCAATTAC                                                                                                                                                                                               ]




>consensus_7607#0
CCCAGAATCGGCACGAGGGGCTATTGGGGGATTTCTCTCATCTGTTGCCCTCATAATCCT
TCTAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCT
TTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTA
TAACACCATCATGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACCGTCTACCTCATGTA
TTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAATATGTATTTGTTACT
GATCCCCAGTCTGCTACTAGGTTTAGTGGCCAATTACGAATTTTCTTTATATGAGGTACT
ATGGGCTTTCTCAATTTACTTGGAATCGGTTGCTATCATGCCTCAGTTGTTTATGATTAG
CAAAACTGGCGAAGCTGAAACAATCACTTCTCACTACTTATTTGCGTTAGGATCATACCG
TGCGTTATATTTGTTCAACTGGATATACCGTTATGTTTTCGATGATTA

consensusID : consensus_7607#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [TAAACAGTTATTAAAGTATTATGATTAGCACTTTTTTATTAAAAAAAGGAAAAAAAAAGAAAAATTAATATGAACACAAATGACATCATGAAGGGGGGGGGGATTTCTCTCATCTTGTTGCCCTCATAATCCTTCTAAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCACGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACCGTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAATATGTATTTGTTAATGATCCCATAT]

[-] EMBL CD140909             [TAAACAGTTATTAAAGTATTATGATTAGCACTTTTTTATTAAAAAAAGGAAAAAAAAAGAAAAATTAATATGAACACAAATGACATCATGAAGGGGGGGGGGATTTCTCTCATCTTGTTGCCCTCATAATCCTTCTAAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCACGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACCGTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAATATGTATTTGTTAATGATCCCATAT]




>consensus_7607#1
TAAACAGTTATTAAAGTATTATGATTAGCACTTTTTTATTAAAAAAAGGAAAAAAAAAGA
AAAATTAATATGAACACAAATGACATCATGAAGGGGGGGGGGATTTCTCTCATCTTGTTG
CCCTCATAATCCTTCTAAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGA
AAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAAT
TTCATTTCACTGTATAACACCATCACGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACC
GTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAAT
ATGTATTTGTTAATGATCCCATAT

consensusID : consensus_7607#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 223
fasta sequence

                              [AGTTCGGTACAAAAAGGCATGAATATATTCAGGCTATTGGGGGATTTCTCTCATCTTGTTGCCCTCATAATCCTGCTAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCA]

[+] EMBL CD096585             [AGTTCGGTACAAAAAGGCATGAATATATTCAGGCTATTGGGGGATTTCTCTCATCTTGTTGCCCTCATAATCCTGCTAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCA]




>consensus_7607#2
AGTTCGGTACAAAAAGGCATGAATATATTCAGGCTATTGGGGGATTTCTCTCATCTTGTT
GCCCTCATAATCCTGCTAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGA
AAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAAT
TTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7607#0      ------------------------------------------------------------
consensus_7607#2      --------------------------------------------------------AGTT 4
consensus_7607#1      TAAACAGTTATTAAAGTATTATGATTAGCACTTTTTTATTAAAAAAAGGAAAAAAAAAGA 60
                                                                                  

consensus_7607#0      ---CCCAGAATCGGCACGAG---------GGGCTATTGGGGGATTTCTCTCATCT-GTTG 47
consensus_7607#2      CGGTACAAAAA-GGCATGAATATATTC--AGGCTATTGGGGGATTTCTCTCATCTTGTTG 61
consensus_7607#1      AAAATTAATATGAACACAAATGACATCATGAAGGGGGGGGGGATTTCTCTCATCTTGTTG 120
                            *  *    **  *                  ****************** ****

consensus_7607#0      CCCTCATAATCCTTCTAAAAAAAA-TCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGA 106
consensus_7607#2      CCCTCATAATCCTGCTAAAAAAAA-TCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGA 120
consensus_7607#1      CCCTCATAATCCTTCTAAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGA 180
                      ************* ********** ***********************************

consensus_7607#0      AAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAAT 166
consensus_7607#2      AAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAAT 180
consensus_7607#1      AAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAAT 240
                      ************************************************************

consensus_7607#0      TTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACC 226
consensus_7607#2      TTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCA----------------- 223
consensus_7607#1      TTCATTTCACTGTATAACACCATCACGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACC 300
                      ************************* *****************                 

consensus_7607#0      GTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAAT 286
consensus_7607#2      ------------------------------------------------------------
consensus_7607#1      GTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAAT 360
                                                                                  

consensus_7607#0      ATGTATTTGTTACTGATCCCCAGTCTGCTACTAGGTTTAGTGGCCAATTACGAATTTTCT 346
consensus_7607#2      ------------------------------------------------------------
consensus_7607#1      ATGTATTTGTTAATGATCCCATAT------------------------------------ 384
                                                                                  

consensus_7607#0      TTATATGAGGTACTATGGGCTTTCTCAATTTACTTGGAATCGGTTGCTATCATGCCTCAG 406
consensus_7607#2      ------------------------------------------------------------
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      TTGTTTATGATTAGCAAAACTGGCGAAGCTGAAACAATCACTTCTCACTACTTATTTGCG 466
consensus_7607#2      ------------------------------------------------------------
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      TTAGGATCATACCGTGCGTTATATTTGTTCAACTGGATATACCGTTATGTTTTCGATGAT 526
consensus_7607#2      ------------------------------------------------------------
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      TA 528
consensus_7607#2      --
consensus_7607#1      --