cluster # 7618

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Schistosoma mansoni
cluster # 7618 cluster # 7618 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7618#0 length = 671 sequences # 4

consensus_7618#1 length = 665 sequences # 1

consensusID : consensus_7618#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 671
fasta sequence

                              [ATTGTAAGACCTCTGAAGGTCGGTCACATTTTAAGATGAATTTATTTAAACCACTGATTATAAAACCAAACAGT-GGTTTGATCAACAGTTTGTGCAATAAAATGCGATTACTGTCCATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTTACCCCGCATATTCCGCACGGAAAATTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACAAGCGCAGACAAGTTTCTGCTCATTTTTGCAACTTGCGCATAAGACTAAACGCTATCAGAAAAAACACGATTTTACCGCAAGAAATCAAGGATTTAGCCACGTTATATATTTCGTCATTACCACGTGATAGCAATTGGACGCGCATTTTAAGCAGATGTATCGTTACTTCGAGGAGACGAGGATGTAAGACACGTTGGAAAGTTTCACGTATTATATGGAGAAAATATGCAGACTATAATAGAATGTCTGGAGTTCTTTGGGCTCGCTGGGGATCAAATACTCGGAGCGTACGAAGACATATGTTATGGCCGCCTCCTAGAGAAACCTCTGTCTCTGAATATGTACGCCGATATCACAAAAATTTGGCTGAT]

[+] EMBL CD141214             [ATTGTAAGACCTCTGAAGGTCGGTCACATTTTAAGATGAATTTATTTAAACCACTGATTATAAAACCAAACAGT GGTTTGATCAACAGTTTGTGCAATAAAATGCGATTACTGTCCATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTANAAAACGAATTATGTGGTTACCCCGCATATTCCGCACGNAAAATTCGTCG                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD137383             [                                            TTTAACCCACTGATTATAAAACCCAACAGT GGTTTGATCAACAGTTTGTGCAATAAAATGCGATTACTGTCCATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTTACNCCGCATATTCCGCACGGAAAATTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACAAGCGCAGACAAGTTTCTGCTCATTTTTGCAACTTGCGCATAAGACTAAACGCTATCAGAAAAAACACGATTTTACCGCAAGAAATCAAGGATTTAGCCACGTTATATATTTCGTCATTACCACGTGATAGCAATTGGACGCGCATTTTAAGCAGATGTATCGTTACTTCGAGGAGACGAGGATGTAAGACACGTTGGAAAGTTTCACGTATTATATGGAGAAAATATGCAGACTATAATAGAATGTCTGGAGTTCTTTGGGCTCGCTGGGGATCAAATACTCGGAGCGTACGAA                                                                             ]
[+] EMBL CD082331             [                                              TAAACCACTGATTATAAAACCAAACAGTGGGTTTGATCAACAGTTTGTGCACTAAAATGCGATTACTGTCCATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTCACCCCGCATATTCCGCACGGAAAATTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACAAGCGCAGACAAGTTTCTGCTCATTTTTGCAACTTGCGCATAAGACTAAACGCTATCAGAAAAAACACGATTTTACCGCAAGAAATCAAGGATTTAGCCACGTTATATATTTCGTCATTACCACGTGATAGCAATTGGACGCGCATTTTAAGCAGATGTATCGTTACTTCGAGGAGACGAGGATGTAAGACACGTTGGAAAGTTTCACGTATTATATGGAGAAAATATGCAGACTATAATAGAATGTCTGGAGTTCTTTGGGCTCGCTGGGGATCAAATACTCGGAGCGTACGAAGACATATGTTATGGCCGCCTCCTAGAGAAACCTCTGTCTCTGAATATGTACGCCGATATCACAAAAATTTGGCTGAT]
[-] EMBL CD097359             [                                                                                   CAACAGTTTGTGCAATAAAATGCGATTACTGTCCATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTTACCCCGCATATTCCGCACGGAAAATTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACAAGCGCAGACAAGTTTCTGCTCATTCTTGCAACTTGCGCATAAGACTAAACGCTATCAGAAAAAACACGATTTTACCGCAAGAAATCAAGGATTTAGCCACGTTATATATTTCGTCATTACCACGTGATAGCAATTGGACGCGCATTTTAAGCAGATGTATCGTTACTTCGAGGAGACGAGGATGTAAGACACGTTGGAAAGTTTCACGTATTATATGGAGAAAATATGCAGACTATAATAGAATGTCTGGAGTTCTTTGGGCTCGCTGGGGATCAAATACTCGGAGCGTACGAAGA                                                                           ]




>consensus_7618#0
ATTGTAAGACCTCTGAAGGTCGGTCACATTTTAAGATGAATTTATTTAAACCACTGATTA
TAAAACCAAACAGTGGTTTGATCAACAGTTTGTGCAATAAAATGCGATTACTGTCCATCC
CACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAG
CTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTTACCCCG
CATATTCCGCACGGAAAATTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACA
AGCGCAGACAAGTTTCTGCTCATTTTTGCAACTTGCGCATAAGACTAAACGCTATCAGAA
AAAACACGATTTTACCGCAAGAAATCAAGGATTTAGCCACGTTATATATTTCGTCATTAC
CACGTGATAGCAATTGGACGCGCATTTTAAGCAGATGTATCGTTACTTCGAGGAGACGAG
GATGTAAGACACGTTGGAAAGTTTCACGTATTATATGGAGAAAATATGCAGACTATAATA
GAATGTCTGGAGTTCTTTGGGCTCGCTGGGGATCAAATACTCGGAGCGTACGAAGACATA
TGTTATGGCCGCCTCCTAGAGAAACCTCTGTCTCTGAATATGTACGCCGATATCACAAAA
ATTTGGCTGAT

consensusID : consensus_7618#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [AGATTGCACATCAGGGAACGGACACCCAGATAAAGTCATGCTAATTCTGTCAACGAAAAAGGCTTTAAAGTCATTACAACACCTGTTTCATATCTCCCATTATAGGCCCGCTATTTTTCACAGCGTTATAAGAATCGAAGGCAATTAAAGATGGATTTCAGAATATGATAATTAATGACATCAGATGGGTCAATAAGCCCATTTCAGTTTTGCTTGGGAATCGGATATCCACACATGCTCATTCCATGAAGAAACGAACGACCGAACAAGGTGTAATCTTAATTCCCACTTACAATTAGAATCAGATTAGCTTATTTGACAGAACCCAATGAATTTATTTAAACCACTGATTATAAAACCAAACAGTGGTTTGATCAACAGTTTGTGCAATAAAATGCGATTACTGTCCATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTTACCCCGCATATTCCGCACGGAAAAGTAGATTGTGACATTGCTATTTATTCCTACATAGNTTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACAAGCGCAGACCAGTTTCTGCTCATTNNTTGCACTTGCG]

[+] EMBL CD079398             [AGATTGCACATCAGGGAACGGACACCCAGATAAAGTCATGCTAATTCTGTCAACGAAAAAGGCTTTAAAGTCATTACAACACCTGTTTCATATCTCCCATTATAGGCCCGCTATTTTTCACAGCGTTATAAGAATCGAAGGCAATTAAAGATGGATTTCAGAATATGATAATTAATGACATCAGATGGGTCAATAAGCCCATTTCAGTTTTGCTTGGGAATCGGATATCCACACATGCTCATTCCATGAAGAAACGAACGACCGAACAAGGTGTAATCTTAATTCCCACTTACAATTAGAATCAGATTAGCTTATTTGACAGAACCCAATGAATTTATTTAAACCACTGATTATAAAACCAAACAGTGGTTTGATCAACAGTTTGTGCAATAAAATGCGATTACTGTCCATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTTACCCCGCATATTCCGCACGGAAAAGTAGATTGTGACATTGCTATTTATTCCTACATAGNTTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACAAGCGCAGACCAGTTTCTGCTCATTNNTTGCACTTGCG]




>consensus_7618#1
AGATTGCACATCAGGGAACGGACACCCAGATAAAGTCATGCTAATTCTGTCAACGAAAAA
GGCTTTAAAGTCATTACAACACCTGTTTCATATCTCCCATTATAGGCCCGCTATTTTTCA
CAGCGTTATAAGAATCGAAGGCAATTAAAGATGGATTTCAGAATATGATAATTAATGACA
TCAGATGGGTCAATAAGCCCATTTCAGTTTTGCTTGGGAATCGGATATCCACACATGCTC
ATTCCATGAAGAAACGAACGACCGAACAAGGTGTAATCTTAATTCCCACTTACAATTAGA
ATCAGATTAGCTTATTTGACAGAACCCAATGAATTTATTTAAACCACTGATTATAAAACC
AAACAGTGGTTTGATCAACAGTTTGTGCAATAAAATGCGATTACTGTCCATCCCACCATT
GATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCA
TAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTTACCCCGCATATTC
CGCACGGAAAAGTAGATTGTGACATTGCTATTTATTCCTACATAGNTTCGTCGTGGCTTT
CAGGATGCTATTATGATTCGTGACTACAAGCGCAGACCAGTTTCTGCTCATTNNTTGCAC
TTGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7618#0      --ATTGTAAGACCTCTGAAGGTCGGTCACATT---TTAAGATGAATTTATTTAAACCACT 55
consensus_7618#1      AGATTGCACATCAGGGAACGGACACCCAGATAAAGTCATGCTAATTCTGTCAACGAAAAA 60
                        **** *   *     * ** *   ** **    * * * * * * * *  *    *  

consensus_7618#0      GATTATAAAACCAAACAGTGGTTTGATCAACAGTTTGTGCAATAAAATGCGATTACTGTC 115
consensus_7618#1      GGCTTTAAAGTCATTACAACACCTGTTTCATATCTC--CCATTATAGGCCCGCTATTTTT 118
                      *  * ****  **          ** *  * *  *    ** ** *   *   ** * * 

consensus_7618#0      CATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAA-GA 174
consensus_7618#1      CACAGCGTTATAAGAATCGAAGGCAATTAAAGATGGATTTCAGAATATGATAATTAATGA 178
                      **   *   **    * **  ** ***   * *      * * *  *       *** **

consensus_7618#0      CACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTT 234
consensus_7618#1      CATCAGATGGGT-CAATAAGCCC---ATTTCAGTTTTGCTTGGGAATCGGATATCCACAC 234
                      ** *** *      ***** **    **   *    ** *    **     ***      

consensus_7618#0      ACCCCGCATATTCCGCACGGAAAATTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTG 294
consensus_7618#1      AT---GCTCATTCCATGAAGAAA---CGAACGACCGAACAAGGTGTAATCTTAATTCCCA 288
                      *    **  *****     ****   **      *   ** * **  **  * ****   

consensus_7618#0      ACTACAAGCGCAGACAAGTTTCTGCTCATTT--TTGCAACTTGCGCATAAGACTAAAC-- 350
consensus_7618#1      CTTACAATTAGAATCAGATT--AGCTTATTTGACAGAACCCAATGAATTTATTTAAACCA 346
                        *****    *  **  **   *** ****    * * *    * **     *****  

consensus_7618#0      ---GCTATCAGAAAAAACACGATTTTACCGCAAGAAATCAAGGATTTAGCCACGTTATAT 407
consensus_7618#1      CTGATTATAAAACCAAACAGTGGTTTGAT-CAACAGTTTGTGCAATAAAATGCGAT-TAC 404
                           *** * *  *****    ***    *** *  *   * * * *    ** * ** 

consensus_7618#0      ATTTCGTCATTACCACGTGATAGCAATTGGACGCGCATTTTAAGCAGATGTATCGTTACT 467
consensus_7618#1      TGTCCATC-CCACCAT-TGATACCG-TCGGAAATACTATACCAGCG--TGAAATAACACC 459
                        * * **   ****  ***** *  * ***    *  *   ***   ** *     ** 

consensus_7618#0      TCGAGGAGACGAGGATGTAAGACACGTTGGAAAGTTTCACGTATTATATGGA-GAAAATA 526
consensus_7618#1      T-------GCTAAGACACCAG-CTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAA 511
                      *        * * **    ** * * *   **   * **   **   *  *  *  ** *

consensus_7618#0      TGCAGACTATAATAGAATGTCTGGAGTTCTTTGGGCTCGCTGG-GGATCAAATACTCGGA 585
consensus_7618#1      AACGAATTATG--TGGTTACCCCGCATATTCCGCACGGAAAAGTAGATTGTGACATTGCT 569
                        *  * ***    *  *  *  *  *  *  *  *      *  ***       * *  

consensus_7618#0      GCGTACGAAGACATATGTT-ATGGCCGCCTCCTAGAGAAACCTCTGTCTC-TGAATATGT 643
consensus_7618#1      ATTTATTCCTACATAGNTTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACAA 629
                         **     *****  **  * *  ** * *  **      * **  ** *** **   

consensus_7618#0      ACGCCGAT--ATCACAAAAATTTGGCTGAT------ 671
consensus_7618#1      GCGCAGACCAGTTTCTGCTCATTNNTTGCACTTGCG 665
                       *** **    *  *      **   **