cluster # 7621

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Schistosoma mansoni
cluster # 7621 cluster # 7621 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7621#0 length = 839 sequences # 3

consensus_7621#1 length = 627 sequences # 1
consensus_7621#2 length = 373 sequences # 1

consensusID : consensus_7621#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 839
fasta sequence

                              [CAGAATTCGGCACGAGGACGGAAATGCACGGGAATAAATTTGTACTGTTACAACCTGGCGATGAAGCAGAACTACTTGGAGATGATGAAGATGGTGATTCTAACCATGTGAATATATCACATTCTACGACAACAACAATGGATTGTAGCAATGATAATGGATCTCCAAGTGGCCTTAACTTCCCAGTTGTAACTGCAAATAAAACTGTAGGACGTAAACGTCCAGCCAGTGAATTGACACCTGAAAAAGATTCAATGACTAGTGGTGAAAAAGTTCTGAAAGTTGCACATACAACTGATGATTCACATGATAATGCTAAAGAGGAAGTAACAAATTTATCAGATTCTGAGCGTTTAGTATGTCGTACTAAACGTTTTATGTCAGATGATGAAAAAACACTTGCTCGTGCTAAACGATTTGGTTTACCAATTAGTAATAATATAAATACTGTTTGTTTAAATAATACTTCTACAAAATTGGATGAACTTGAAAAGTTAAAAAAACGTGCTGAACGATTTGGTGTAACTACTAGTAAAACATTAGAAAAGTTAACCGATTTGGAACGTAAAGCTAAACGTTTGGAGAAATTCGGTAAACCTTT---ATCATCATCATCATCATCAGGGAATACACAAATGAATGATGAATTAGCTAAATCAATTCGTGCACAAAAATTTGGTTTAAATTTATCCAATAAC-AACAGTATTTCAGATGCTGAAAAATTATCTAAACGTCAAGCAAGATTTGGTT--TAGTTGATAATAAAATTTAATATTCCATTCATCCATTTGTAAAGTTTTTATATTTATATATATATCTTTTTTCCCCAAATATGATTTATCAT]

[+] EMBL CD082050             [CAGAATTCGGCACGAGGACGGAAATGCACGGGAATAAATTTGTACTGTTACAACCTGGCGATGAAGCAGAACTACTTGGAGATGATGAAGATGGTGATTCTAACCATGTGAATATATCACATTCTACGACAACAACAATGGATTGTAGCAATGATAATGGATCTCCAAGTGGCCTTAACTTCCCAGTTGTAACTGCAAATAAAACTGTAGGACGTAAACGTCCAGCCAGTGAATTGACACCTGAAAAAGATTCAATGACTAGTGGTGAAAAAGTTCTGAAAGTTGCACATACAACTGATGATTCACATGATAATGCTAAAGAGGAAGTAACAAATTTATCAGATTCTGAGCGTTTAGTATGTCGTACTAAACGTTTTATGTCAGATGATGAAAAAACACTTGCTCGTGCTAAACGATTTGGTTTACCAATTAGTAATAATATAAATACTGTTTGTTTAAATAATACTTCTACAAAATTGGATGAACTTGAAAAGTTAAAAAAACGTGCTGAACGATTTGGTGTAACTACTAGTAAAACATTAGAAAAGTTAACCGATTTGGAACGTAAAGCTAAACGTTTGGAGAAATTCGGTAAACCTTT   ATCATCATCATCATCATCAGGGAATACACANATGAATGATGAATTAGCTAAATCAATTCGTGCACAAAAATTTGGTTTTAATTTATCCAATAACAAACAGTA TTCAGATGCTGAAAAAATATCT AACGTCAAGC AGAATTGGTTNNNAG TGAT ATAAANTTAAATA TCCA TC TCCATNTG NAAG NTNTATANTTATATATAa                             ]
[-] EMBL CD073502             [                                                                                                                                                                                                                              CAGCCAGTGAATTGACACCTGAAAAAGATTCAATGACTAGTGGTGAAAAAGTTCTGAAAGTTGCACATACAACTGATGATTCACATGATAATGCTAAAGAGGAAGTAACAAATTTATCAGATTCTGAGCGTTTAGTATGTCGTACTAAACGTTTTATGTCAGATGATGAAAAAACACTTGCTCGTGCTAAACGATTTGGTTTACCAATTAGTAATAATATAAATACTGTTTGTTTAAATAATACTTCTACAAAATTGGATGAACTTGAAAAGTTAAAAAAACGTGCTGAACGATTTGGTGTAACTACTAGTAAAACATTAGAAAAGTTAACCGATTTGGAACGTAAAGCTAAACGTTTGGAGAAATTCGGTAAACCTTTATCATCATCATCATCATCATCAGGGAATACACAAATGAATGATGAATTAGCTAAATCAATTCGTGCACAAAAATTTGGTTTAAATTTATCCAATAAC AACAGTATTTCAGATGCTGAAAAATTATTTAAACGTCAAGCAAGATTTGGTT  TAGTTGATAATAAAATTTAATATTCCATTCATCCATTTGTAAAGTTTTTATATTTATATATATATCTTTTTTCCCCAAATATGATTTATCAT]
[-] EMBL CD075663             [                                                                                                                                                                                                                                                     AAAGATTCAATGACTAGTGGTGAAAAAGTTCTGAAAGTTGCACATACAACTGATGATTCACATGATAATGCTAAAGAGGAAGTAACAAATTTATCAGATTCTGAGCGTTTAGTATGTCGTACTAAACGTTTTATGTCAGATGATGAAAAAACACTTGCTCGTGCTAAACGATTTGGTTTACCAATTAGTAATAATATAAATACTGTTTGTTTAAATAATACTTCTACAAAATTGGATGAACTTGAAAAGTTAAAAAAACGTGCTGAACGATTTGGTGTAACTACTAGTAAAACATTAGAAAAGTTAACCGATTTGGAACGTAAAGCTAAACGTTTGGAGAAATTCGGTAAACCTTT   ATCATCATCATCATCATCAGGGAATACACAAATGAATGATGAATTAGCTAAATCAATTCGTGCACAAAAATTTGGTTTAAATTTATCCAATAAC AACAGTATTTCAGATGCTGAAAAATTATCTAAACGTCAAGCAAGATTTGGTT  TAGTTGATAATAAAATTTAATATTCCATTCATCCATTTGTAAAGTTTTTATATTTATATATATATCT                         ]




>consensus_7621#0
CAGAATTCGGCACGAGGACGGAAATGCACGGGAATAAATTTGTACTGTTACAACCTGGCG
ATGAAGCAGAACTACTTGGAGATGATGAAGATGGTGATTCTAACCATGTGAATATATCAC
ATTCTACGACAACAACAATGGATTGTAGCAATGATAATGGATCTCCAAGTGGCCTTAACT
TCCCAGTTGTAACTGCAAATAAAACTGTAGGACGTAAACGTCCAGCCAGTGAATTGACAC
CTGAAAAAGATTCAATGACTAGTGGTGAAAAAGTTCTGAAAGTTGCACATACAACTGATG
ATTCACATGATAATGCTAAAGAGGAAGTAACAAATTTATCAGATTCTGAGCGTTTAGTAT
GTCGTACTAAACGTTTTATGTCAGATGATGAAAAAACACTTGCTCGTGCTAAACGATTTG
GTTTACCAATTAGTAATAATATAAATACTGTTTGTTTAAATAATACTTCTACAAAATTGG
ATGAACTTGAAAAGTTAAAAAAACGTGCTGAACGATTTGGTGTAACTACTAGTAAAACAT
TAGAAAAGTTAACCGATTTGGAACGTAAAGCTAAACGTTTGGAGAAATTCGGTAAACCTT
TATCATCATCATCATCATCAGGGAATACACAAATGAATGATGAATTAGCTAAATCAATTC
GTGCACAAAAATTTGGTTTAAATTTATCCAATAACAACAGTATTTCAGATGCTGAAAAAT
TATCTAAACGTCAAGCAAGATTTGGTTTAGTTGATAATAAAATTTAATATTCCATTCATC
CATTTGTAAAGTTTTTATATTTATATATATATCTTTTTTCCCCAAATATGATTTATCAT

consensusID : consensus_7621#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [GATATCGTTGGCGTTACATCAAAGGTGTGTCTAACTAACCGTCCCGCAATTCACGTAGTGTTCTTGTACAATGTCAGAGTCTGTACAAAATGTCGAAGATTTGCATAAATTGAAGTTAAGCGACCTGAAAAAAATATGTAAAGAAAACAAGCTTCCATCTACAGGAACAAAAGTGGAACTCATCTCACGTATTACGGAAATGCACGGGAATAAATTTGTACTGTTACAACCTGGCGATGAAGCAGAACTACTTGGAGATGATGAAGATGGTGATTCTAACCATGTGAATATATCACATTCTACGACAACAACAATGGATTGTAGCAATGATAATGGATCTCCAAGTGGCCTTAACTTCCCAGTTGTAACTGCAAATAAAACTGTAGGACGTAAACGTCCAGCCAGTGAATTGACACCTGAAAAAGATTCAATGACTAGTGGTGAAAAAGTTCTGAAAGTTGCACATACAACTGATGATTCACATGATAATGCTAAAGAGGAAGTAACANATTTATCAGATTCTGAGCGTTTAGTATGTCGTACTAAACGTTNTATGTCAGATGATGAANAAACACTTGCTCGTGCTAAACGATTTGGTTTACCAATTAGTAATAATATAAATACTGT]

[+] EMBL CD079049             [GATATCGTTGGCGTTACATCAAAGGTGTGTCTAACTAACCGTCCCGCAATTCACGTAGTGTTCTTGTACAATGTCAGAGTCTGTACAAAATGTCGAAGATTTGCATAAATTGAAGTTAAGCGACCTGAAAAAAATATGTAAAGAAAACAAGCTTCCATCTACAGGAACAAAAGTGGAACTCATCTCACGTATTACGGAAATGCACGGGAATAAATTTGTACTGTTACAACCTGGCGATGAAGCAGAACTACTTGGAGATGATGAAGATGGTGATTCTAACCATGTGAATATATCACATTCTACGACAACAACAATGGATTGTAGCAATGATAATGGATCTCCAAGTGGCCTTAACTTCCCAGTTGTAACTGCAAATAAAACTGTAGGACGTAAACGTCCAGCCAGTGAATTGACACCTGAAAAAGATTCAATGACTAGTGGTGAAAAAGTTCTGAAAGTTGCACATACAACTGATGATTCACATGATAATGCTAAAGAGGAAGTAACANATTTATCAGATTCTGAGCGTTTAGTATGTCGTACTAAACGTTNTATGTCAGATGATGAANAAACACTTGCTCGTGCTAAACGATTTGGTTTACCAATTAGTAATAATATAAATACTGT]




>consensus_7621#1
GATATCGTTGGCGTTACATCAAAGGTGTGTCTAACTAACCGTCCCGCAATTCACGTAGTG
TTCTTGTACAATGTCAGAGTCTGTACAAAATGTCGAAGATTTGCATAAATTGAAGTTAAG
CGACCTGAAAAAAATATGTAAAGAAAACAAGCTTCCATCTACAGGAACAAAAGTGGAACT
CATCTCACGTATTACGGAAATGCACGGGAATAAATTTGTACTGTTACAACCTGGCGATGA
AGCAGAACTACTTGGAGATGATGAAGATGGTGATTCTAACCATGTGAATATATCACATTC
TACGACAACAACAATGGATTGTAGCAATGATAATGGATCTCCAAGTGGCCTTAACTTCCC
AGTTGTAACTGCAAATAAAACTGTAGGACGTAAACGTCCAGCCAGTGAATTGACACCTGA
AAAAGATTCAATGACTAGTGGTGAAAAAGTTCTGAAAGTTGCACATACAACTGATGATTC
ACATGATAATGCTAAAGAGGAAGTAACANATTTATCAGATTCTGAGCGTTTAGTATGTCG
TACTAAACGTTNTATGTCAGATGATGAANAAACACTTGCTCGTGCTAAACGATTTGGTTT
ACCAATTAGTAATAATATAAATACTGT

consensusID : consensus_7621#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence

                              [GCGCCTCGATATCGTTGGCGTTACATCAAAGCAATTCACGTAGTGTTCTTGTACAATGTCAGAGTCTGTACAAAATGTCGAAGATTTGCATAAATTGAAGTTAAGCGACCTGAAAAAAATATGTAAAGAAAACAAGCTTCCATCTACAGGAACAAAAGTGGAACTCATCTCACGTATTACGGAAATGCACGGGAATAAATTTGTACTGTTACAACCTGGCGATGAAGCAGAACTACTTGGAGATGATGAAGATGGTGATTCTAACCATGTGAATATATCACATTCTACGACAACAACAATGGATTGTAGCAATGATAATGGATCTCCAAGTGGCCTTAACTTCCCAGTTGTAACTGCAAATAAAACTGTAGGA]

[-] EMBL CD190291             [GCGCCTCGATATCGTTGGCGTTACATCAAAGCAATTCACGTAGTGTTCTTGTACAATGTCAGAGTCTGTACAAAATGTCGAAGATTTGCATAAATTGAAGTTAAGCGACCTGAAAAAAATATGTAAAGAAAACAAGCTTCCATCTACAGGAACAAAAGTGGAACTCATCTCACGTATTACGGAAATGCACGGGAATAAATTTGTACTGTTACAACCTGGCGATGAAGCAGAACTACTTGGAGATGATGAAGATGGTGATTCTAACCATGTGAATATATCACATTCTACGACAACAACAATGGATTGTAGCAATGATAATGGATCTCCAAGTGGCCTTAACTTCCCAGTTGTAACTGCAAATAAAACTGTAGGA]




>consensus_7621#2
GCGCCTCGATATCGTTGGCGTTACATCAAAGCAATTCACGTAGTGTTCTTGTACAATGTC
AGAGTCTGTACAAAATGTCGAAGATTTGCATAAATTGAAGTTAAGCGACCTGAAAAAAAT
ATGTAAAGAAAACAAGCTTCCATCTACAGGAACAAAAGTGGAACTCATCTCACGTATTAC
GGAAATGCACGGGAATAAATTTGTACTGTTACAACCTGGCGATGAAGCAGAACTACTTGG
AGATGATGAAGATGGTGATTCTAACCATGTGAATATATCACATTCTACGACAACAACAAT
GGATTGTAGCAATGATAATGGATCTCCAAGTGGCCTTAACTTCCCAGTTGTAACTGCAAA
TAAAACTGTAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7621#1      -------GATATCGTTGGCGTTACATCAAAGGTGTGTCTAACTAACCGTCCCGCAATTCA 53
consensus_7621#2      GCGCCTCGATATCGTTGGCGTTACATCAAAG----------------------CAATTCA 38
consensus_7621#0      ------------------------------------------------------------
                                                                                  

consensus_7621#1      CGTAGTGTTCTTGTACAATGTCAGAGTCTGTACAAAATGTCGAAGATTTGCATAAATTGA 113
consensus_7621#2      CGTAGTGTTCTTGTACAATGTCAGAGTCTGTACAAAATGTCGAAGATTTGCATAAATTGA 98
consensus_7621#0      ------------------------------------------------------------
                                                                                  

consensus_7621#1      AGTTAAGCGACCTGAAAAAAATATGTAAAGAAAACAAGCTTCCATCTACAGGAACAAAAG 173
consensus_7621#2      AGTTAAGCGACCTGAAAAAAATATGTAAAGAAAACAAGCTTCCATCTACAGGAACAAAAG 158
consensus_7621#0      ------------------------------------------------------------
                                                                                  

consensus_7621#1      TGGAACTCATCTCACGTATTACGGAAATGCACGGGAATAAATTTGTACTGTTACAACCTG 233
consensus_7621#2      TGGAACTCATCTCACGTATTACGGAAATGCACGGGAATAAATTTGTACTGTTACAACCTG 218
consensus_7621#0      CAGAATTCGGCACGAGGA---CGGAAATGCACGGGAATAAATTTGTACTGTTACAACCTG 57
                        *** **  * *  * *   ***************************************

consensus_7621#1      GCGATGAAGCAGAACTACTTGGAGATGATGAAGATGGTGATTCTAACCATGTGAATATAT 293
consensus_7621#2      GCGATGAAGCAGAACTACTTGGAGATGATGAAGATGGTGATTCTAACCATGTGAATATAT 278
consensus_7621#0      GCGATGAAGCAGAACTACTTGGAGATGATGAAGATGGTGATTCTAACCATGTGAATATAT 117
                      ************************************************************

consensus_7621#1      CACATTCTACGACAACAACAATGGATTGTAGCAATGATAATGGATCTCCAAGTGGCCTTA 353
consensus_7621#2      CACATTCTACGACAACAACAATGGATTGTAGCAATGATAATGGATCTCCAAGTGGCCTTA 338
consensus_7621#0      CACATTCTACGACAACAACAATGGATTGTAGCAATGATAATGGATCTCCAAGTGGCCTTA 177
                      ************************************************************

consensus_7621#1      ACTTCCCAGTTGTAACTGCAAATAAAACTGTAGGACGTAAACGTCCAGCCAGTGAATTGA 413
consensus_7621#2      ACTTCCCAGTTGTAACTGCAAATAAAACTGTAGGA------------------------- 373
consensus_7621#0      ACTTCCCAGTTGTAACTGCAAATAAAACTGTAGGACGTAAACGTCCAGCCAGTGAATTGA 237
                      ***********************************                         

consensus_7621#1      CACCTGAAAAAGATTCAATGACTAGTGGTGAAAAAGTTCTGAAAGTTGCACATACAACTG 473
consensus_7621#2      ------------------------------------------------------------
consensus_7621#0      CACCTGAAAAAGATTCAATGACTAGTGGTGAAAAAGTTCTGAAAGTTGCACATACAACTG 297
                                                                                  

consensus_7621#1      ATGATTCACATGATAATGCTAAAGAGGAAGTAACANATTTATCAGATTCTGAGCGTTTAG 533
consensus_7621#2      ------------------------------------------------------------
consensus_7621#0      ATGATTCACATGATAATGCTAAAGAGGAAGTAACAAATTTATCAGATTCTGAGCGTTTAG 357
                                                                                  

consensus_7621#1      TATGTCGTACTAAACGTTNTATGTCAGATGATGAANAAACACTTGCTCGTGCTAAACGAT 593
consensus_7621#2      ------------------------------------------------------------
consensus_7621#0      TATGTCGTACTAAACGTTTTATGTCAGATGATGAAAAAACACTTGCTCGTGCTAAACGAT 417
                                                                                  

consensus_7621#1      TTGGTTTACCAATTAGTAATAATATAAATACTGT-------------------------- 627
consensus_7621#2      ------------------------------------------------------------
consensus_7621#0      TTGGTTTACCAATTAGTAATAATATAAATACTGTTTGTTTAAATAATACTTCTACAAAAT 477
                                                                                  

consensus_7621#1      ------------------------------------------------------------
consensus_7621#2      ------------------------------------------------------------
consensus_7621#0      TGGATGAACTTGAAAAGTTAAAAAAACGTGCTGAACGATTTGGTGTAACTACTAGTAAAA 537
                                                                                  

consensus_7621#1      ------------------------------------------------------------
consensus_7621#2      ------------------------------------------------------------
consensus_7621#0      CATTAGAAAAGTTAACCGATTTGGAACGTAAAGCTAAACGTTTGGAGAAATTCGGTAAAC 597
                                                                                  

consensus_7621#1      ------------------------------------------------------------
consensus_7621#2      ------------------------------------------------------------
consensus_7621#0      CTTTATCATCATCATCATCATCAGGGAATACACAAATGAATGATGAATTAGCTAAATCAA 657
                                                                                  

consensus_7621#1      ------------------------------------------------------------
consensus_7621#2      ------------------------------------------------------------
consensus_7621#0      TTCGTGCACAAAAATTTGGTTTAAATTTATCCAATAACAACAGTATTTCAGATGCTGAAA 717
                                                                                  

consensus_7621#1      ------------------------------------------------------------
consensus_7621#2      ------------------------------------------------------------
consensus_7621#0      AATTATCTAAACGTCAAGCAAGATTTGGTTTAGTTGATAATAAAATTTAATATTCCATTC 777
                                                                                  

consensus_7621#1      ------------------------------------------------------------
consensus_7621#2      ------------------------------------------------------------
consensus_7621#0      ATCCATTTGTAAAGTTTTTATATTTATATATATATCTTTTTTCCCCAAATATGATTTATC 837
                                                                                  

consensus_7621#1      --
consensus_7621#2      --
consensus_7621#0      AT 839