cluster # 7630

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Schistosoma mansoni
cluster # 7630 cluster # 7630 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7630#0 length = 649 sequences # 1

consensus_7630#1 length = 369 sequences # 4

consensusID : consensus_7630#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence

                              [CGAGCTCGGTACCCTTCTGTGATGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCTTTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCTGGAAAAAAAGCTTTTAAAAATGATAAAAATACACTATAAATATTCAGGGACAATTACTTAGAGTAAAATTGGACATTTATCGGAATTATTTCGACTATAATCAAAATTTAAAAGGAATAACTCAACATTACATAAGTGAGCTCTAGATCGTTAGATCTTTGAGAGAGAGTTGGGAACCCATCTAGACTTATCTAGGAAAACGATATCATAAGCACAAGGACAGATTTTATATGTGCTCAATTTCGCCGCTTATAACGTAGACAAGATGTTCGCAGTTCTGTAAGTGAGCGATAATTCTGTTCAGGAGCTCATCATATACTGGCTTAGCGGTGTGAATTACGGCCACTGAATGCTGAAGTTGTTTGTATGTTATGAGCCTTAGGCTGTAGATATCATAGAAATATTGCTTGCTTATGGTAGGGGATGTTGATGTTAGGGTGTCATAGTAAAGTGGTAGATTACCTGAGAAACTGGTAGACCTC]

[+] EMBL CD129109             [CGAGCTCGGTACCCTTCTGTGATGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCTTTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCTGGAAAAAAAGCTTTTAAAAATGATAAAAATACACTATAAATATTCAGGGACAATTACTTAGAGTAAAATTGGACATTTATCGGAATTATTTCGACTATAATCAAAATTTAAAAGGAATAACTCAACATTACATAAGTGAGCTCTAGATCGTTAGATCTTTGAGAGAGAGTTGGGAACCCATCTAGACTTATCTAGGAAAACGATATCATAAGCACAAGGACAGATTTTATATGTGCTCAATTTCGCCGCTTATAACGTAGACAAGATGTTCGCAGTTCTGTAAGTGAGCGATAATTCTGTTCAGGAGCTCATCATATACTGGCTTAGCGGTGTGAATTACGGCCACTGAATGCTGAAGTTGTTTGTATGTTATGAGCCTTAGGCTGTAGATATCATAGAAATATTGCTTGCTTATGGTAGGGGATGTTGATGTTAGGGTGTCATAGTAAAGTGGTAGATTACCTGAGAAACTGGTAGACCTC]




>consensus_7630#0
CGAGCTCGGTACCCTTCTGTGATGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCT
TTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAA
ATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCTGGAAAAAAAGCTT
TTAAAAATGATAAAAATACACTATAAATATTCAGGGACAATTACTTAGAGTAAAATTGGA
CATTTATCGGAATTATTTCGACTATAATCAAAATTTAAAAGGAATAACTCAACATTACAT
AAGTGAGCTCTAGATCGTTAGATCTTTGAGAGAGAGTTGGGAACCCATCTAGACTTATCT
AGGAAAACGATATCATAAGCACAAGGACAGATTTTATATGTGCTCAATTTCGCCGCTTAT
AACGTAGACAAGATGTTCGCAGTTCTGTAAGTGAGCGATAATTCTGTTCAGGAGCTCATC
ATATACTGGCTTAGCGGTGTGAATTACGGCCACTGAATGCTGAAGTTGTTTGTATGTTAT
GAGCCTTAGGCTGTAGATATCATAGAAATATTGCTTGCTTATGGTAGGGGATGTTGATGT
TAGGGTGTCATAGTAAAGTGGTAGATTACCTGAGAAACTGGTAGACCTC

consensusID : consensus_7630#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 369
fasta sequence

                              [AGAGATAGACGTGATCTACGGTGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCTTTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCAGCATATAGCGATCTTCAGGTAAAAAACTAGAACACGGCAATTCCATTAGAGCAGTCAAACATTTACGGAAGAGACATGCAGTTCCTGTGCTACTTAGATAAAAATCAGTGACTTGGTTACTTATTTCATTGTGTTCTGCCTCTAAATACAATAACTGTGACATTTGTGATTGATAAAACTGCCGTCCAATAGGTCCTCCTGTC]

[-] EMBL CD086036             [AGAGATAGACGTGATCTACGGTGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCTTTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCAGCATATAGCGATCTTCAGGTAAAAAACTAGAACACGGCAATTCCATTAGAGCAGTCAAACATTTACGGAAGAGACATGCAGTTCCTGTGCTACTTAGATAAAAATCAGTGACTTGGTTACTTATTTCATTGTGTTCTGCCTCTAAATACAATAACTGAGACATTTGTGATTGATAAAACTGCCGTCCAATAGGTCCTCCTGTC]
[-] EMBL CD086201             [      AGACGTGATCTACGGTGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCTTTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCAGCATATAGCGATCTTCAGGTAAAAAACTAGAACACGGCAATTCCATTAGAGCAGTCAAACATTTACGGAAGAGACATGCAGTTCCTGTGCTACTTAGATAAAAATCAGTGACTTGGTTACTTATTTCATTGTGCTCTGCCTCTAAATACAATAACTGTGACATTTGTGATTGATAAAACTGCCG                   ]
[-] EMBL CD086220             [      AGACGTGATCTACGGTGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCTTTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCAGCATATAGCGATCTTCAGGTAAAAAACTAGAACACGGCAATTCCATTAGAGCAGTCAAACATTTACGGAAGAGACATGCAGTTCCTGTGCTACTTAGATAAAAATCAGTGACTTGGTTACTTATTTCATTGTGTTCTGCCTCTAAATACAATAACTGTGACATTTGTGATTGATAAAACTGCCG                   ]
[-] EMBL CD085988             [      AGACGTGATCTACGGTGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCGTTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCAGCATATAGCGATCTTCAGGTAAAAAACTAGAACACGGCAATTCCATTAGAGCAGTCAAACATTTACGGAAGAGACATGCAGTTCCTGTGCTACTTAGATAAAAATCAGTGACTTGGTTACTTATTTCATTGTGTTCTGCCTCTAAATACAATAACTGTGACATTTGTGATTGATAAAACTGCCG                   ]




>consensus_7630#1
AGAGATAGACGTGATCTACGGTGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCTT
TCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAA
TGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCAGCATATAGCGATCT
TCAGGTAAAAAACTAGAACACGGCAATTCCATTAGAGCAGTCAAACATTTACGGAAGAGA
CATGCAGTTCCTGTGCTACTTAGATAAAAATCAGTGACTTGGTTACTTATTTCATTGTGT
TCTGCCTCTAAATACAATAACTGTGACATTTGTGATTGATAAAACTGCCGTCCAATAGGT
CCTCCTGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7630#0      CGAGCTCGGTACCCTTCTGTGATGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCT 60
consensus_7630#1      AGAGATAGACGTGAT-CTACGGTGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCT 59
                       *** * *      * **  * **************************************

consensus_7630#0      TTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAA 120
consensus_7630#1      TTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAA 119
                      ************************************************************

consensus_7630#0      ATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCTGGAAAAAAAGCTT 180
consensus_7630#1      ATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCAGCATATAGCGATC 179
                      ********************************************** * * * *  * * 

consensus_7630#0      TTAA---AAATGATAAAAATACACTATAAATATTCAGGGA--CAATTACTTAGAGTAAAA 235
consensus_7630#1      TTCAGGTAAAAAACTAGAACACGGCAATTCCATTAGAGCAGTCAAACATTTACGGAAGAG 239
                      ** *   ***  *  * ** **   *     ***   * *  ***  * ***  * * * 

consensus_7630#0      TTGGACATTTATCGGAATTATTTCGACTATAATCAAAATTTAAAAGGAATAACTCA--AC 293
consensus_7630#1      ACATGCAGTT-CCTGTGCTACTTAGATAAAAATCAGTGACTTGGTTACTTATTTCATTGT 298
                           ** **  * *   ** ** **  * *****     *        **  ***    

consensus_7630#0      ATTACATAAGTGAGCTCTA-GATCGTTAGATCTTTGA--GAGAGAGTTGGGAACCCATCT 350
consensus_7630#1      GTTCTGCCTCTAAATACAATAACTGTGACATTTGTGATTGATAAAACTGCCGTCCAATAG 358
                       **       * *   * *  *  ** * ** * ***  ** * *  **    ** **  

consensus_7630#0      AGACTTATCTAGGAAAACGATATCATAAGCACAAGGACAGATTTTATATGTGCTCAATTT 410
consensus_7630#1      GTCCTCCTGTC------------------------------------------------- 369
                         **  * *                                                  

consensus_7630#0      CGCCGCTTATAACGTAGACAAGATGTTCGCAGTTCTGTAAGTGAGCGATAATTCTGTTCA 470
consensus_7630#1      ------------------------------------------------------------
                                                                                  

consensus_7630#0      GGAGCTCATCATATACTGGCTTAGCGGTGTGAATTACGGCCACTGAATGCTGAAGTTGTT 530
consensus_7630#1      ------------------------------------------------------------
                                                                                  

consensus_7630#0      TGTATGTTATGAGCCTTAGGCTGTAGATATCATAGAAATATTGCTTGCTTATGGTAGGGG 590
consensus_7630#1      ------------------------------------------------------------
                                                                                  

consensus_7630#0      ATGTTGATGTTAGGGTGTCATAGTAAAGTGGTAGATTACCTGAGAAACTGGTAGACCTC 649
consensus_7630#1      -----------------------------------------------------------