cluster # 7634

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Schistosoma mansoni
cluster # 7634 cluster # 7634 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7634#0 length = 346 sequences # 4

consensus_7634#1 length = 335 sequences # 1

consensusID : consensus_7634#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 346
fasta sequence

                              [ATTAAGGAAGCACGAATTTCTAACATTACGAAATCCACATGGTTCAATGTACAAACCATCATAAATTATTTTATCGACATCGTTTTTTAAAACAGTATCAGTGGGATGCGACTAAATGGACTGTGTCGAACAACTTGTGGTACGACCTTTCCTACCCTTGGATTTTTTAATTGAATTTGAACACTTGTTCTCGTCTCCGTGCTGGAGTTCCGAGGTTGATTTTAAATCCCAGAATTGTTTTTGAAGATCAGAAGACCCGGCAAGCTGAGAAAATCTGCTCATATTCAATTATGTAGGAAAAAGGACTACGATATATTACTAGTGAGACTAGTTGTGCAACGACATG]

[+] EMBL CD122912             [ATTAAGGAAGCACGAATTTCTAACATTACGAAATCCACATGGTTCAATGTACAAACCATCATAAATTATTTTATCGACATCGTTTTTTAAAACAGTATCAGTGGGATGCGACTAAATGGACTGTGTCGAACAACTTGTGGTACGACCTTTCCTACCCTTGGATTTTTTAATTGAATTTGAACACCTGTTCTCGTCTCCGTGCTGGAGTTCCGAGGTTGATTTTAAATCCCAGAATTGTTTTTGAAGATCAGAAGACCCGGCAAGCTGAGAAAATCTGCTCATATTCAATTATGTAGGAAAAAGGACTACGATATATTACTAGTGAGACTAGTTGTGCAACGACAT ]
[-] EMBL CD122991             [ TTAAGGAAGCACGAATTTCTAACATTACGAAATCCACATGGTTCAATGTACAAACCATCATAAATTATTTTATCGACATCGTTTTTTAAAACAGTATCAGTGGGATGCGACTAAATGGACTGTGTCGAACAACTTGTGGTACGACTTTTCCTACCCTTGGATTTTTTAATTGAATTTGAACACTTGTTCTCGTCTCCGTGCTGGAGTTCCGAGGTTGATTTTAAATCCCAGAATTGTTTTTGAAGATCAGAAGACCCGGCAAGCTGAGAAAATCTGCTCATATTCAATTATGTAGGAAAAAGGACTACGATATATTACTAGTGAGACTAGTTGTGCAACGACATG]
[-] EMBL CD122756             [ TTAAGGAAGCACGAATTTCTAACATTACGAAATCCACATGGTTCAATGTACAAACCATCATAAATTATTTTATCGACATCGTTTTTTAAAACAGTATCAGTGGGATGCGACTGAATGGACTGTGTCGAACAACTTGTGGTACGACCTTTCCTACCCTTGGATTTTTTAATTGAATTTGAACACTTGTTCTCGCCTCCGTGCTGGAGTTCCGAGGTTGATTTTAAATCCCAGAATTGTTTTTGAAGATCAGAAGACCCGGCAAGCTGAGAAAATCTGCTCATATTCAATTATGTAGGAAAAAGGACTACGATATATTACTAGTGAGACTAGTTGTGCAACGACATG]
[-] EMBL CD122984             [ TTAAGGAAGCACGAATTTCTAACATTACGAAATCCACATGGTTCAATGTACAAACCATCATAAATTATTTTATCGACATCGTTTTTTAAAACAGTATCAGTGGGATGCGACTGAATGGACTGTGTCGAACAACTTGTGGTACGACCTTTCCTACCCTTGGATTTTTTAATTGAATTTGAACACTTGTTCTCGTCTCCGTGCTGGAGTTCCGAGGTTGATTTTAAATCCCAGAATTGTTTTTGAAGATCAGAAGACCCGGCAAGCTGAGAAAATCTGCTCATATTCAATTATGTAGGAAAAAGGACTACGATATATTACTAGTGAGACTAGTTGTGCAACGACATG]




>consensus_7634#0
ATTAAGGAAGCACGAATTTCTAACATTACGAAATCCACATGGTTCAATGTACAAACCATC
ATAAATTATTTTATCGACATCGTTTTTTAAAACAGTATCAGTGGGATGCGACTAAATGGA
CTGTGTCGAACAACTTGTGGTACGACCTTTCCTACCCTTGGATTTTTTAATTGAATTTGA
ACACTTGTTCTCGTCTCCGTGCTGGAGTTCCGAGGTTGATTTTAAATCCCAGAATTGTTT
TTGAAGATCAGAAGACCCGGCAAGCTGAGAAAATCTGCTCATATTCAATTATGTAGGAAA
AAGGACTACGATATATTACTAGTGAGACTAGTTGTGCAACGACATG

consensusID : consensus_7634#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [ACTACCCGGTCCCTTAAATTGGAGTAGGTAGAGAGGGGTTCGAACTTTTTAAAACAGTATCAGCGGGATGCGACTGAATGGACTGTGTCGAACAACTTGTGGTACGACCTTTCCTACCCTTGGATTTTTTAATTGAATTTGAACACTTGTTCTCGTCTCCGTGCTGGAGTTCCGAGGTTGATTTTAAATCCCAGAATTGTTTTTGAAGATCAGAAGACCCGGCAAGCTGAGAAAATCTGCTCATATTCAATTATGTAGGAAAAAGGACTACGATATATTACTAGTGAGACTAGTTGTGCAACGACATGTCCACCCAACAACCCGTAGGTAACGTG]

[+] EMBL CD120996             [ACTACCCGGTCCCTTAAATTGGAGTAGGTAGAGAGGGGTTCGAACTTTTTAAAACAGTATCAGCGGGATGCGACTGAATGGACTGTGTCGAACAACTTGTGGTACGACCTTTCCTACCCTTGGATTTTTTAATTGAATTTGAACACTTGTTCTCGTCTCCGTGCTGGAGTTCCGAGGTTGATTTTAAATCCCAGAATTGTTTTTGAAGATCAGAAGACCCGGCAAGCTGAGAAAATCTGCTCATATTCAATTATGTAGGAAAAAGGACTACGATATATTACTAGTGAGACTAGTTGTGCAACGACATGTCCACCCAACAACCCGTAGGTAACGTG]




>consensus_7634#1
ACTACCCGGTCCCTTAAATTGGAGTAGGTAGAGAGGGGTTCGAACTTTTTAAAACAGTAT
CAGCGGGATGCGACTGAATGGACTGTGTCGAACAACTTGTGGTACGACCTTTCCTACCCT
TGGATTTTTTAATTGAATTTGAACACTTGTTCTCGTCTCCGTGCTGGAGTTCCGAGGTTG
ATTTTAAATCCCAGAATTGTTTTTGAAGATCAGAAGACCCGGCAAGCTGAGAAAATCTGC
TCATATTCAATTATGTAGGAAAAAGGACTACGATATATTACTAGTGAGACTAGTTGTGCA
ACGACATGTCCACCCAACAACCCGTAGGTAACGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7634#0      ATTAAGGAAGCACGAATTTCTAACATTACGAAATCCACATGGTTCAATGTACAAACCATC 60
consensus_7634#1      ---------------------------------ACTACCCGGTCCCTTAAATTGGAGTAG 27
                                                        * **  *** *  *  *         

consensus_7634#0      ATAAATTATTTTATCGACATCGTTTTTTAAAACAGTATCAGTGGGATGCGACTAAATGGA 120
consensus_7634#1      GTAGAGAGGGGT-TCGA----ACTTTTTAAAACAGTATCAGCGGGATGCGACTGAATGGA 82
                       ** *      * ****      ****************** *********** ******

consensus_7634#0      CTGTGTCGAACAACTTGTGGTACGACCTTTCCTACCCTTGGATTTTTTAATTGAATTTGA 180
consensus_7634#1      CTGTGTCGAACAACTTGTGGTACGACCTTTCCTACCCTTGGATTTTTTAATTGAATTTGA 142
                      ************************************************************

consensus_7634#0      ACACTTGTTCTCGTCTCCGTGCTGGAGTTCCGAGGTTGATTTTAAATCCCAGAATTGTTT 240
consensus_7634#1      ACACTTGTTCTCGTCTCCGTGCTGGAGTTCCGAGGTTGATTTTAAATCCCAGAATTGTTT 202
                      ************************************************************

consensus_7634#0      TTGAAGATCAGAAGACCCGGCAAGCTGAGAAAATCTGCTCATATTCAATTATGTAGGAAA 300
consensus_7634#1      TTGAAGATCAGAAGACCCGGCAAGCTGAGAAAATCTGCTCATATTCAATTATGTAGGAAA 262
                      ************************************************************

consensus_7634#0      AAGGACTACGATATATTACTAGTGAGACTAGTTGTGCAACGACATG-------------- 346
consensus_7634#1      AAGGACTACGATATATTACTAGTGAGACTAGTTGTGCAACGACATGTCCACCCAACAACC 322
                      **********************************************              

consensus_7634#0      -------------
consensus_7634#1      CGTAGGTAACGTG 335