cluster # 766

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Schistosoma mansoni
cluster # 766 cluster # 766 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_766#0 length = 547 sequences # 1

consensus_766#1 length = 373 sequences # 1

consensusID : consensus_766#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [GGGTTTGTGAAAGAAATTGCCGACCGTGTAAAATGGATTGCAGAGGTCATTGTTCATCCGGGCGAAAACGAACTACAAGCTCTTGCGGAAGGAGCGTTGCGCGTTTTACGCGGCGAGGAAAAAGAAAAAGAATACCCGGGGAATTTCGTTACAACGAATATGAAGTAGAAAGGAGAGGAATAAAATGGCAAAAGAGTACGATCTCGTCATATTAGGCGGCGGCACAGGCGGATATGTAGCGGCGATTCGTGCAGCACAATTAGGCTTAAAAACAGCCGTTGTCGAAAAAGGAAAGCTCGGCGGAACGTGCTTGCATGCAGGCTGCATTCCGAGCAAAGCGTTGCTTCGCAGCGCAGAAGTGTACGCGCAAACGAAAGAAAGCGAAAAGTTTGGCGTGCTTGCTAGCGATGTAAAACTAGATTTTCCGAAAGTGCAAGCGCGCANAAGAAGTATTGTTGAGCAATTACATANAGGCGTTCAGCATTTAATGAAAAAAGGGAAAGTCGATGTATACGAAGGAACAGGCCGCATTTTAGGCCCTTCGATT]

[+] EMBL CD158381             [GGGTTTGTGAAAGAAATTGCCGACCGTGTAAAATGGATTGCAGAGGTCATTGTTCATCCGGGCGAAAACGAACTACAAGCTCTTGCGGAAGGAGCGTTGCGCGTTTTACGCGGCGAGGAAAAAGAAAAAGAATACCCGGGGAATTTCGTTACAACGAATATGAAGTAGAAAGGAGAGGAATAAAATGGCAAAAGAGTACGATCTCGTCATATTAGGCGGCGGCACAGGCGGATATGTAGCGGCGATTCGTGCAGCACAATTAGGCTTAAAAACAGCCGTTGTCGAAAAAGGAAAGCTCGGCGGAACGTGCTTGCATGCAGGCTGCATTCCGAGCAAAGCGTTGCTTCGCAGCGCAGAAGTGTACGCGCAAACGAAAGAAAGCGAAAAGTTTGGCGTGCTTGCTAGCGATGTAAAACTAGATTTTCCGAAAGTGCAAGCGCGCANAAGAAGTATTGTTGAGCAATTACATANAGGCGTTCAGCATTTAATGAAAAAAGGGAAAGTCGATGTATACGAAGGAACAGGCCGCATTTTAGGCCCTTCGATT]




>consensus_766#0
GGGTTTGTGAAAGAAATTGCCGACCGTGTAAAATGGATTGCAGAGGTCATTGTTCATCCG
GGCGAAAACGAACTACAAGCTCTTGCGGAAGGAGCGTTGCGCGTTTTACGCGGCGAGGAA
AAAGAAAAAGAATACCCGGGGAATTTCGTTACAACGAATATGAAGTAGAAAGGAGAGGAA
TAAAATGGCAAAAGAGTACGATCTCGTCATATTAGGCGGCGGCACAGGCGGATATGTAGC
GGCGATTCGTGCAGCACAATTAGGCTTAAAAACAGCCGTTGTCGAAAAAGGAAAGCTCGG
CGGAACGTGCTTGCATGCAGGCTGCATTCCGAGCAAAGCGTTGCTTCGCAGCGCAGAAGT
GTACGCGCAAACGAAAGAAAGCGAAAAGTTTGGCGTGCTTGCTAGCGATGTAAAACTAGA
TTTTCCGAAAGTGCAAGCGCGCANAAGAAGTATTGTTGAGCAATTACATANAGGCGTTCA
GCATTTAATGAAAAAAGGGAAAGTCGATGTATACGAAGGAACAGGCCGCATTTTAGGCCC
TTCGATT

consensusID : consensus_766#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence

                              [GTGAGAGTCAATGCGAGCGTGTTGACGGTGGGGCTTGCTGACGGAACAGAAGTTGAGAAGGTGATGTACCGACCGGGTCAAATGGATTGCAGGAGAGTCGATTGTGTGACCTGCAGGAAAACGAATTGCCAGCGCTCGCGGAACGAGCGCCGGGCGTGCTACGCTATGAAAAGACTGAGAACGAATATCCAGGCATATTTTGATGCATACGAATATGATCGCATGGGAAAGGTGCAGACAGAATGGCCAGGAGTGCGACTCTGCGCATATTAGGCGGCGGGACAGGTGGCTATGTTACGGCGATTCGTGCGGCGCAATTAGGCTTAAAACAGCCGTTGTCGAAAAAGGAAGCTCGGCGGAACGTGCTTGCACG]

[+] EMBL CD164951             [GTGAGAGTCAATGCGAGCGTGTTGACGGTGGGGCTTGCTGACGGAACAGAAGTTGAGAAGGTGATGTACCGACCGGGTCAAATGGATTGCAGGAGAGTCGATTGTGTGACCTGCAGGAAAACGAATTGCCAGCGCTCGCGGAACGAGCGCCGGGCGTGCTACGCTATGAAAAGACTGAGAACGAATATCCAGGCATATTTTGATGCATACGAATATGATCGCATGGGAAAGGTGCAGACAGAATGGCCAGGAGTGCGACTCTGCGCATATTAGGCGGCGGGACAGGTGGCTATGTTACGGCGATTCGTGCGGCGCAATTAGGCTTAAAACAGCCGTTGTCGAAAAAGGAAGCTCGGCGGAACGTGCTTGCACG]




>consensus_766#1
GTGAGAGTCAATGCGAGCGTGTTGACGGTGGGGCTTGCTGACGGAACAGAAGTTGAGAAG
GTGATGTACCGACCGGGTCAAATGGATTGCAGGAGAGTCGATTGTGTGACCTGCAGGAAA
ACGAATTGCCAGCGCTCGCGGAACGAGCGCCGGGCGTGCTACGCTATGAAAAGACTGAGA
ACGAATATCCAGGCATATTTTGATGCATACGAATATGATCGCATGGGAAAGGTGCAGACA
GAATGGCCAGGAGTGCGACTCTGCGCATATTAGGCGGCGGGACAGGTGGCTATGTTACGG
CGATTCGTGCGGCGCAATTAGGCTTAAAACAGCCGTTGTCGAAAAAGGAAGCTCGGCGGA
ACGTGCTTGCACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_766#0      ------------------------------------------------GGGTTTGTGAAA 12
consensus_766#1      GTGAGAGTCAATGCGAGCGTGTTGACGGTGGGGCTTGCTGACGGAACAGAAGTTGAGAAG 60
                                                                     *   *** *** 

consensus_766#0      GAAAT-TGCCGACCGTGTAAAATGGATTGCAGAGG---TCATTGT-TCATCCGGGCGAAA 67
consensus_766#1      GTGATGTACCGACCGGGTCAAATGGATTGCAGGAGAGTCGATTGTGTGACCTGCAGGAAA 120
                     *  ** * ******* ** *************  *     ***** * * * *   ****

consensus_766#0      ACGAACTACAAGCTCTTGCGGAAGGAGCGTTGCGCGTTTTACGCGGCGAGGAAAAAGAAA 127
consensus_766#1      ACGAATTGCCAGCGCTCGCGGAACGAGCGCCGGGCGTGCTACGCTATGAAAAGACTGAGA 180
                     ***** * * *** ** ****** *****  * ****  *****   **  * *  ** *

consensus_766#0      AAGAATACCCGGGGA-ATTTCGTTACA-ACGAATATGAA---GTAGAAAGGAGAGGAATA 182
consensus_766#1      ACGAATATCCAGGCATATTTTGATGCATACGAATATGATCGCATGGGAAAGGTGCAGACA 240
                     * ***** ** ** * **** * * ** **********     * * ** *      * *

consensus_766#0      AAATGGCAAAAGAGTACGATCTCGT-CATATTAGGCGGCGGCACAGGCGGATATGTAGCG 241
consensus_766#1      GAATGGCCAG-GAGTGCGACTCTGCGCATATTAGGCGGCGGGACAGGTGGCTATGTTACG 299
                      ****** *  **** ***    *  *************** ***** ** *****  **

consensus_766#0      GCGATTCGTGCAGCACAATTAGGCTTAAAAACAGCCGTTGTCGAAAAAGGAAAGCTCGGC 301
consensus_766#1      GCGATTCGTGCGGCGCAATTAGGCTTAAAA-CAGCCGTTGTCGAAAAAGGAA-GCTCGGC 357
                     *********** ** *************** ********************* *******

consensus_766#0      GGAACGTGCTTGCATGCAGGCTGCATTCCGAGCAAAGCGTTGCTTCGCAGCGCAGAAGTG 361
consensus_766#1      GGAACGTGCTTGCACG-------------------------------------------- 373
                     ************** *                                            

consensus_766#0      TACGCGCAAACGAAAGAAAGCGAAAAGTTTGGCGTGCTTGCTAGCGATGTAAAACTAGAT 421
consensus_766#1      ------------------------------------------------------------
                                                                                 

consensus_766#0      TTTCCGAAAGTGCAAGCGCGCANAAGAAGTATTGTTGAGCAATTACATANAGGCGTTCAG 481
consensus_766#1      ------------------------------------------------------------
                                                                                 

consensus_766#0      CATTTAATGAAAAAAGGGAAAGTCGATGTATACGAAGGAACAGGCCGCATTTTAGGCCCT 541
consensus_766#1      ------------------------------------------------------------
                                                                                 

consensus_766#0      TCGATT 547
consensus_766#1      ------