cluster # 7669

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Schistosoma mansoni
cluster # 7669 cluster # 7669 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7669#0 length = 598 sequences # 2

consensus_7669#1 length = 473 sequences # 2
consensus_7669#2 length = 137 sequences # 1

consensusID : consensus_7669#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 598
fasta sequence

                              [AATGTACACACTGACTATATGACACTATTGTTATTACCTTACTGACACACTATTTTAGCTTTTGTTTAAATTACTGAATAATAAGAAGTGATGGGATATCTGACGAATTACGTATGTCTTTGCACCGATTTAAGACAAACAGTTTAAGTTAGAGTACTGTATAAGGACAGTCATATTCTCTCAAGCTTTTCTACGTCTTTTAAAGATCAGCTGTTTGAAAAGTTCACAGTTGAATATTCAGAGTGACTTATTACTATTATCTTGATCGTTTCACTGCATGTGGCTATTCGAATGTCAATAGTAAGTAACCCACCCATATGCAATACAACAGATGGTGGATAACTAGAAAGAGCTAGTGAGATGAAAGATTTCATGTGTGTTCAACTGAATCGGTTTTGATTATTTCGAGGTAATCAGGACATATTGTGGAAAGAATTCTCAAAGGTAATGAACAGTAATGGATGGAAGTGAACATATCGACACAATTCCACCAAATGATAACAAATTCATGTGCAGTAACATTNTAGTTATTCACAATCACATTTCTACCAACGGACGTGGATATTCATCTCACAATGTATCGCATCATTTCATGATA]

[+] EMBL CD124018             [AATGTACACACTGACTATATGACACTATTGTTATTACCTTACTGACACACTATTTTAGCTTTTGTTTAAATTACTGAATAATAAGAAGTGATGGGATATCTGACGAATTACGTATGTCTTTGCACCGATTTAAGACAAACAGTTTAAGTTAGAGTACTGTATAAGGACAGTCATATTCTCTCAAGCTTTTCTACGTCTTTTAAAGATCAGCTGTTTGAAAAGTTCACAGTTGAATATTCAGAGTGACTTATTACTATTATCTTGATCGTTTCACTGCATGTGGCTATTCGAATGTCAATAGTAAGTAACCCACCCATATGCAATACAACAGATGGTGGATAACTAGAAAGAGCTAGTGAGATGAAAGATTTCATGTGTGTTCAACTGAATCGGTTTTGATTATTTCGAGGTAATCAGGACATATTGTGGAAAGAATTCTCAAAGGTAATGAACAGTAATGGATGGAAGTGAACATATCGACACAATTCCACCAAATGATAACAAATTCATGTGCAGTAACATTNTAGTTATTCACAATCACATTTCTACCAACGGACGTGGATATTCATCTCACAATGTATCGCATCATTTCATGATA]
[+] EMBL CD098142             [                                                     TTTAGC TTTGTTTAAATTACTGAATAATAAGAAGTGATGGGATATCTGACGAATTACGTATGTCTTTGCACCGATTTAAGACAAACAGTTTAAGTTAGAGTACTGTACAAGGACAGTCATATTCTCTCAAGCTTTTCTACGTCTTTTAAAGATCAGCTGTTTGAAAAGTTCACAGTTGAATATTCAGAGTGACTTATTACTATTATCTTGATCGTTTCACTGCATGTGGCTATTCGAATGTCAATAGTAAGTAACCCACCCATATGCAATACAACAGATGGTGGATAACTAGAAAGAGCTAGTGAGATGAAAGATTTCATGTGTGTTCAACTGAATCGGTTTTGATTATTTCGAGGTAATCAGGACATATTGTGGAAAGAATTCTCAA                                                                                                                                                            ]




>consensus_7669#0
AATGTACACACTGACTATATGACACTATTGTTATTACCTTACTGACACACTATTTTAGCT
TTTGTTTAAATTACTGAATAATAAGAAGTGATGGGATATCTGACGAATTACGTATGTCTT
TGCACCGATTTAAGACAAACAGTTTAAGTTAGAGTACTGTATAAGGACAGTCATATTCTC
TCAAGCTTTTCTACGTCTTTTAAAGATCAGCTGTTTGAAAAGTTCACAGTTGAATATTCA
GAGTGACTTATTACTATTATCTTGATCGTTTCACTGCATGTGGCTATTCGAATGTCAATA
GTAAGTAACCCACCCATATGCAATACAACAGATGGTGGATAACTAGAAAGAGCTAGTGAG
ATGAAAGATTTCATGTGTGTTCAACTGAATCGGTTTTGATTATTTCGAGGTAATCAGGAC
ATATTGTGGAAAGAATTCTCAAAGGTAATGAACAGTAATGGATGGAAGTGAACATATCGA
CACAATTCCACCAAATGATAACAAATTCATGTGCAGTAACATTNTAGTTATTCACAATCA
CATTTCTACCAACGGACGTGGATATTCATCTCACAATGTATCGCATCATTTCATGATA

consensusID : consensus_7669#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 473
fasta sequence

                              [AAGATTGGAAGAAATCACCACTTTGTAATGTACACACTGACTATATGACACTATTGTTATTACCTTACTGACACACTTTATTTTCGGTTTTGTTTAAATTACTGAGTAATAAGAAGTGATGTGATATCTGAGGAAATACTTATGTCTTTGCACCAATTTAAGACAAACAGTGTATGTTAGAGTACTGTACGGGGACAGTCATATTCTGTGAAGCTTTTCTACGTGTTTCAAAGATCAGCTGTTTGAAAAGTTCACAGTTAATATTGTGTGACTTATTGCTAATATTTTGATCGTTTCACTGCGTACAGCTATTTCAATGTGAATAGTAAGTAACCCACCCATTTGCAATAGAACAGATGATGGATAACTAGAATCGGTTNTGCTTATTACAAGGTAATGAGGACATATTGTGAAAATAATTTGTAAGGGAAATGAACAGTAATGGATGGAAATGAACACATCGACACAATTCC]

[+] EMBL CD118193             [AAGATTGGAAGAAATCACCACTTTGTAATGTACACACTGACTATATGACACTATTGTTATTACCTTACTGACACACTTTATTTTCGGTTTTGTTTAAATTACTGAGTAATAAGAAGTGATGTGATATCTGAGGAAATACTTATGTCTTTGCACCAATTTAAGACAAACAGTGTATGTTAGAGTACTGTACGGGGACAGTCATATTCTGTGAAGCTTTTCTACGTGTTTCAAAGATCAGCTGTTTGAAAAGTTCACAGTTAATATTGTGTGACTTATTGCTAATATTTTGATCGTTTCACTGCGTACAGCTATTTCAATGTGAATAGTAAGTAACCCACCCATTTGCAATAGAACAGATGATGGATAACTAGAATCGGTTNTGCTTATTACAAGGTAATGAGGACATATTGTGAAAATAATTTGTAAGGGAAATGAACAGTAATGGATGGAAATGAACACATCGACACAATTCC]
[+] EMBL CD117900             [AAGATTGGAAGAAATCACCACTTTGTAATGTACACACTGACTATATGACACTATTGTTATTACCTTACTGACACACTTTATTTTCGGTTTTGTTTAAATTACTGAGTAATAAGAAGTGATGTGATATCTGAGGAAATACTTATGTCTTTGCACCAATTTAAGACAAACAGTGTATGTTAGAGTACTGTACGGGGACAGTCATATTCTGTGAAGCTTTTCTACGTGTTTCAAAGATCAGCTGTTTGAAAAGTTCACAGTTAATATTGTGTGACTTATTGCTAATATTTTGATCGTTTCACTGCGTACAGCTATTTCAATGTGAATAGTAAGTAACCCACCCATTTGCAATAGAACAGATGATGGATAAC                                                                                                         ]




>consensus_7669#1
AAGATTGGAAGAAATCACCACTTTGTAATGTACACACTGACTATATGACACTATTGTTAT
TACCTTACTGACACACTTTATTTTCGGTTTTGTTTAAATTACTGAGTAATAAGAAGTGAT
GTGATATCTGAGGAAATACTTATGTCTTTGCACCAATTTAAGACAAACAGTGTATGTTAG
AGTACTGTACGGGGACAGTCATATTCTGTGAAGCTTTTCTACGTGTTTCAAAGATCAGCT
GTTTGAAAAGTTCACAGTTAATATTGTGTGACTTATTGCTAATATTTTGATCGTTTCACT
GCGTACAGCTATTTCAATGTGAATAGTAAGTAACCCACCCATTTGCAATAGAACAGATGA
TGGATAACTAGAATCGGTTNTGCTTATTACAAGGTAATGAGGACATATTGTGAAAATAAT
TTGTAAGGGAAATGAACAGTAATGGATGGAAATGAACACATCGACACAATTCC

consensusID : consensus_7669#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 137
fasta sequence

                              [ATTTGCAATAGAACAGATGATGGATAACTAGAATGGGTTTTGCTTATTACAAGATAATCAGGACATATTATGAAAATAGTTCTCAAGGGAAATGAACAGTATGGATGGAGTGAACACATCGACACATTTCACCAAAT]

[+] EMBL CD127362             [ATTTGCAATAGAACAGATGATGGATAACTAGAATGGGTTTTGCTTATTACAAGATAATCAGGACATATTATGAAAATAGTTCTCAAGGGAAATGAACAGTATGGATGGAGTGAACACATCGACACATTTCACCAAAT]




>consensus_7669#2
ATTTGCAATAGAACAGATGATGGATAACTAGAATGGGTTTTGCTTATTACAAGATAATCA
GGACATATTATGAAAATAGTTCTCAAGGGAAATGAACAGTATGGATGGAGTGAACACATC
GACACATTTCACCAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7669#1      AAGATTGGAAGAAATCACCACTTTGTAATGTACACACTGACTATATGACACTATTGTTAT 60
consensus_7669#2      ------------------------------------------------------------
consensus_7669#0      --------------------------AATGTACACACTGACTATATGACACTATTGTTAT 34
                                                                                  

consensus_7669#1      TACCTTACTGACACACTTTATTTTCGGTTTTGTTTAAATTACTGAGTAATAAGAAGTGAT 120
consensus_7669#2      ------------------------------------------------------------
consensus_7669#0      TACCTTACTGACACACT--ATTTTAGCTTTTGTTTAAATTACTGAATAATAAGAAGTGAT 92
                                                                                  

consensus_7669#1      GTGATATCTGAGGAAATACTTATGTCTTTGCACCAATTTAAGACAAACAGTGTATGTTAG 180
consensus_7669#2      ------------------------------------------------------------
consensus_7669#0      GGGATATCTGACGAATTACGTATGTCTTTGCACCGATTTAAGACAAACAGTTTAAGTTAG 152
                                                                                  

consensus_7669#1      AGTACTGTACGGGGACAGTCATATTCTGTGAAGCTTTTCTACGTGTTTCAAAGATCAGCT 240
consensus_7669#2      ------------------------------------------------------------
consensus_7669#0      AGTACTGTATAAGGACAGTCATATTCTCTCAAGCTTTTCTACGTCTTTTAAAGATCAGCT 212
                                                                                  

consensus_7669#1      GTTTGAAAAGTTCACAGTTAA---TATTGTGTGACTTATTGCTAATATTTTGATCGTTTC 297
consensus_7669#2      ------------------------------------------------------------
consensus_7669#0      GTTTGAAAAGTTCACAGTTGAATATTCAGAGTGACTTATTACTATTATCTTGATCGTTTC 272
                                                                                  

consensus_7669#1      ACTGCGTACAGCTATTTCAATGTGAATAGTAAGTAACCCACCCATTTGCAATAGAACAGA 357
consensus_7669#2      -------------------------------------------ATTTGCAATAGAACAGA 17
consensus_7669#0      ACTGCATGTGGCTATTCGAATGTCAATAGTAAGTAACCCACCCATATGCAATACAACAGA 332
                                                                 ** ******* ******

consensus_7669#1      TGATGGATAACTAGAA-----------------------------------------TCG 376
consensus_7669#2      TGATGGATAACTAGAA-----------------------------------------TGG 36
consensus_7669#0      TGGTGGATAACTAGAAAGAGCTAGTGAGATGAAAGATTTCATGTGTGTTCAACTGAATCG 392
                      ** *************                                         * *

consensus_7669#1      GTTNTGCTTATTACAAGGTAATGAGGACATATTGTGAAAATAATTTGTAAGGGAAATGAA 436
consensus_7669#2      GTTTTGCTTATTACAAGATAATCAGGACATATTATGAAAATAGTTCTCAAGGGAAATGAA 96
consensus_7669#0      GTTTTGATTATTTCGAGGTAATCAGGACATATTGTGGAAAGAATTCTCAAAGGTAATGAA 452
                      *** ** ***** * ** **** ********** ** *** * **   ** ** ******

consensus_7669#1      CAGTAATGGATGGAAATGAACACATCGACACA-ATTCC---------------------- 473
consensus_7669#2      CAGTA-TGGATGGAG-TGAACACATCGACACA-TTTCACCAAAT---------------- 137
consensus_7669#0      CAGTAATGGATGGAAGTGAACATATCGACACAATTCCACCAAATGATAACAAATTCATGT 512
                      ***** ********  ****** *********  * *                       

consensus_7669#1      ------------------------------------------------------------
consensus_7669#2      ------------------------------------------------------------
consensus_7669#0      GCAGTAACATTNTAGTTATTCACAATCACATTTCTACCAACGGACGTGGATATTCATCTC 572
                                                                                  

consensus_7669#1      --------------------------
consensus_7669#2      --------------------------
consensus_7669#0      ACAATGTATCGCATCATTTCATGATA 598