cluster # 771

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Schistosoma mansoni
cluster # 771 cluster # 771 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_771#0 length = 439 sequences # 1

consensus_771#1 length = 202 sequences # 1

consensusID : consensus_771#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [TGGTCGATGCATATGACTTGAGCTTTTCTACTTATGAGCAATTGTGAGGTGATAGAGTGTGGATTGATGGTATTGGATCAGGAATCGAGAGGCATAGAGAGATTGTGAACTTGATTTTGGATTGGCATATGGAGATTGCCCGTTGATTGTGCCAGACGTCGAGATGCACCATGCAGCTGACTAGAGCTTTCTACTTATGAGGAATTGTGAGGTGATCGTGGGGGGATTGACGTTATTGGATCAGTAGGCTAATGGCACAGAGACATTGCTTATTTCGAGGATCATCACACGATTGGCATCGCGTTCATAGGATGCGTGCTAGAGGCGAGATCCTATCGCTCATGATTTAAGATTATACAGTAGGGTGATGAGGATTCCTGCCTGATGGCTTTATTCTTTCGTTCTACACGATAACAGTGATTATCTGTGAGAATGCCAG]

[+] EMBL CD066247             [TGGTCGATGCATATGACTTGAGCTTTTCTACTTATGAGCAATTGTGAGGTGATAGAGTGTGGATTGATGGTATTGGATCAGGAATCGAGAGGCATAGAGAGATTGTGAACTTGATTTTGGATTGGCATATGGAGATTGCCCGTTGATTGTGCCAGACGTCGAGATGCACCATGCAGCTGACTAGAGCTTTCTACTTATGAGGAATTGTGAGGTGATCGTGGGGGGATTGACGTTATTGGATCAGTAGGCTAATGGCACAGAGACATTGCTTATTTCGAGGATCATCACACGATTGGCATCGCGTTCATAGGATGCGTGCTAGAGGCGAGATCCTATCGCTCATGATTTAAGATTATACAGTAGGGTGATGAGGATTCCTGCCTGATGGCTTTATTCTTTCGTTCTACACGATAACAGTGATTATCTGTGAGAATGCCAG]




>consensus_771#0
TGGTCGATGCATATGACTTGAGCTTTTCTACTTATGAGCAATTGTGAGGTGATAGAGTGT
GGATTGATGGTATTGGATCAGGAATCGAGAGGCATAGAGAGATTGTGAACTTGATTTTGG
ATTGGCATATGGAGATTGCCCGTTGATTGTGCCAGACGTCGAGATGCACCATGCAGCTGA
CTAGAGCTTTCTACTTATGAGGAATTGTGAGGTGATCGTGGGGGGATTGACGTTATTGGA
TCAGTAGGCTAATGGCACAGAGACATTGCTTATTTCGAGGATCATCACACGATTGGCATC
GCGTTCATAGGATGCGTGCTAGAGGCGAGATCCTATCGCTCATGATTTAAGATTATACAG
TAGGGTGATGAGGATTCCTGCCTGATGGCTTTATTCTTTCGTTCTACACGATAACAGTGA
TTATCTGTGAGAATGCCAG

consensusID : consensus_771#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 202
fasta sequence

                              [CATATTCCCGCGGGCTCCTCCACACACTCAGGGAATTGCTATAATGCTGTTCATAGAAGCACGAAATGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGAT]

[+] EMBL CD145915             [CATATTCCCGCGGGCTCCTCCACACACTCAGGGAATTGCTATAATGCTGTTCATAGAAGCACGAAATGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGAT]




>consensus_771#1
CATATTCCCGCGGGCTCCTCCACACACTCAGGGAATTGCTATAATGCTGTTCATAGAAGC
ACGAAATGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGT
CGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGT
GTGTGGATTGATGGTATTGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_771#0      TGGTCGATGCATATGACTTGAGCTTTTCTACTTATGAGCAATTGTGAGGTGATAGAGTGT 60
consensus_771#1      ------------------------CATATTCCCGCGGGCTCCTCCACACACTCAGGGAAT 36
                                               * * *    * **   *          ** *  *

consensus_771#0      GGATTGATGGTATTGGATCAGGAATCGAGAGGCATAGAGAGATTGTGAACTTGATTTTGG 120
consensus_771#1      TGCT--ATAATGCTGT-TCAT------AGAAGCACGAAA------TGAACTTGATTTTGG 81
                      * *  **  *  **  ***       *** ***   *       ***************

consensus_771#0      ATTGGCATATGGAGATTGCCCGTTGATTGTGCCAGACGTCGAGATGCACCATGCAGCTGA 180
consensus_771#1      ATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGA 141
                     ********** ******* * **************  **** ****  * *** ** ***

consensus_771#0      CTAGAGCTTTCTACTTATGAGGAATTGTGAGGTGATCGTGGGGGGATTGACGTTATTGGA 240
consensus_771#1      CTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGA 201
                     ** *** ************** ************** *** * ******* * *******

consensus_771#0      TCAGTAGGCTAATGGCACAGAGACATTGCTTATTTCGAGGATCATCACACGATTGGCATC 300
consensus_771#1      T----------------------------------------------------------- 202
                     *                                                           

consensus_771#0      GCGTTCATAGGATGCGTGCTAGAGGCGAGATCCTATCGCTCATGATTTAAGATTATACAG 360
consensus_771#1      ------------------------------------------------------------
                                                                                 

consensus_771#0      TAGGGTGATGAGGATTCCTGCCTGATGGCTTTATTCTTTCGTTCTACACGATAACAGTGA 420
consensus_771#1      ------------------------------------------------------------
                                                                                 

consensus_771#0      TTATCTGTGAGAATGCCAG 439
consensus_771#1      -------------------