cluster # 7729

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Schistosoma mansoni
cluster # 7729 cluster # 7729 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7729#0 length = 552 sequences # 4

consensus_7729#1 length = 347 sequences # 1

consensusID : consensus_7729#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 552
fasta sequence

                              [AATCACAAGAGTGAGCTGATGTGGTAAGGTCAGTTATGTTTTGAATATATATACACAGAACCAAGAAAATAGATAACACTAAAATTAAGTTAAGTTGTGCATCCAAACTCATTGATCATCCAGAGCAACCACGACAACCGCAACTTTGACACTCCACAACTTTACCTTCTTCTAACTTTGACTTTGGTACTCGACATACGCAATTAGTTCCAAAATTTGTATCTCTAGATTGGATGCACCTCAAACAACACAAGTTTTCATATCCTTGTTTCTTCCATTTGGCGATTAGATTTGCATCGGCTATCTTCTCTTTGATGCAGAATTCATACAGCTCTTTAGAAATAGCTTTACGTTTATAATACAAGTCATATATGAACCGAGACCTCTTGTGATGGATGCGAAATATTGGCCACTCAGCCTCAACTTTACGCTTCCCCTCATGAGGATCAGTTTCTGCCTCACGCATCTTCCTGTTCAATTCTTCGATTGTTGGTTCGATTAACTCCCATCCTTCGGGTGGCGGTTTTTTACTCCTCCTATAAGGCGCCATTC]

[+] EMBL CD140213             [AATCACAAGAGTGAGCTGATGTGGTAAGGTCAGTTATGTTTTGAATATATATACACAGAACCAAGAAAATAGATAACACTAAAATTAAGTTAAGTTGTGCATCCAAACTCATTGATCATCCAGAGCAACCACGACAACCGCAACTTTGACACTCCACAACTTTACCTTCTTCTAACTTTGACTTTGGTACTCGACATACGCAATTAGTTCCAAAATTTGTATCTCTAGATTGGATGCACCTCAAACAACACAAGTTTTCATATCCTTGTTTCTTCCATTTGGCGATTAGATTTGCATCGGCTATCTTCTCTTTGATGCAGAATTCATACAGCTCTTTAGAAATAGCTTTACGTTTATAATATAAGTCATATATGAACCGAGACCTCTTGTGAT                                                                                                                                                               ]
[-] EMBL CD140597             [                     TGGTAAGGTCAGTTATGTTTTGAATATATATACACAGAACCAAGAAAATAGATAACACTAAAATTAAGTTAAGTTGTGCATCCAAACTCATTGATCATCCAGAGCAACCACGACAACCGCAACTTTGACACTCCACAACTTTACCTTCTTCTAACTTTGACTTTGGTACTCGACATACGCAATTAGTTCCAAAATTTGTATCTCTAGATTGGATGCACCTCAAACAACACAAGTTTTCATATCCTTGTTTCTTCCATTTGGCGATTAGATTTGCATCGGCTATCTTCTCTTTGATGCAGAATTCATACAGCTCTTTAGAAATAGCTTTACGTTTATAATACAAGTCATATATG                                                                                                                                                                                  ]
[+] EMBL CD162825             [                                                                                                                                    GACAACCGCAACTTTGACACTCCACAACTTTACCTTCTTCTAACTTTGACTTTGGTACTCGGCATACGCAATTAGTTCCAAAATTTGTATCTCTAGATTGGATGCACCTCAAACAACACGAGTTTTCATATCCTTGTTTCTTCCATTTGGCGATTAGATTTGCATCGGCTATCTTCTCTTTGATGCAGAATTCATACAGCTCTTTAGAAATAGCTTTACGTTTATAATACAAGTCATATATGAACCGAGACCTCTTATGATGGATGCGAAATATTGGCCACTCAGCCTCAACTTTACGCTTCCCCTCATGAGGATCAGTTTCTGCCTCACGCATCTTCCTGTTCAATTCTTCGATTGTTGGTTCGATTAACTCCCATCCTTCGGGTGGCGGTTTTTTACTCCTCCTATAAGGCGCCATTC]
[+] EMBL CD194112             [                                                                                                                                                                                                                 CCAAAATTTGTATCTCTAGATTGGATGCACCTCAAACAACACAAGTTTTCATATCCTTGTTTCTTCCATTTGGCGATTAGATTTGCATCGGCTATCTTCTCTTTGATGCAGAATTCATACAGCTCTTTAGAAATAGCTTTACGTTTATAATACAAGTCATATAT                                                                                                                                                                                   ]




>consensus_7729#0
AATCACAAGAGTGAGCTGATGTGGTAAGGTCAGTTATGTTTTGAATATATATACACAGAA
CCAAGAAAATAGATAACACTAAAATTAAGTTAAGTTGTGCATCCAAACTCATTGATCATC
CAGAGCAACCACGACAACCGCAACTTTGACACTCCACAACTTTACCTTCTTCTAACTTTG
ACTTTGGTACTCGACATACGCAATTAGTTCCAAAATTTGTATCTCTAGATTGGATGCACC
TCAAACAACACAAGTTTTCATATCCTTGTTTCTTCCATTTGGCGATTAGATTTGCATCGG
CTATCTTCTCTTTGATGCAGAATTCATACAGCTCTTTAGAAATAGCTTTACGTTTATAAT
ACAAGTCATATATGAACCGAGACCTCTTGTGATGGATGCGAAATATTGGCCACTCAGCCT
CAACTTTACGCTTCCCCTCATGAGGATCAGTTTCTGCCTCACGCATCTTCCTGTTCAATT
CTTCGATTGTTGGTTCGATTAACTCCCATCCTTCGGGTGGCGGTTTTTTACTCCTCCTAT
AAGGCGCCATTC

consensusID : consensus_7729#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [AACCTTTGACCTTTGGGAACTNGAAAAAACGNCAANAAGTTCCCCAAATTTGTATCTCCAAGGANTGGATGCACCCCAAACCAANACAAGTTNTCATATCCTTGTTTCTTCCATTTGGCGAATAGANTTTGCATNGGCTATCTTCTCTTTGATGCAGNATTCANACAGCTCTTTAGAAATAGCTTTACGTTTATAATACAAGTCATATATGAACCGAGACCTCTTATGATGGATGCGAAANATTGGCCANTCAGCCTCAACTTTACGCTTCCCCTCATGAGGATCAGTTTCTGCCTCACGCATCTTCCTGTTCAATTCNTCGATTGTTGGTTCGANTAACTCCCATC]

[-] EMBL SM270                [AACCTTTGACCTTTGGGAACTNGAAAAAACGNCAANAAGTTCCCCAAATTTGTATCTCCAAGGANTGGATGCACCCCAAACCAANACAAGTTNTCATATCCTTGTTTCTTCCATTTGGCGAATAGANTTTGCATNGGCTATCTTCTCTTTGATGCAGNATTCANACAGCTCTTTAGAAATAGCTTTACGTTTATAATACAAGTCATATATGAACCGAGACCTCTTATGATGGATGCGAAANATTGGCCANTCAGCCTCAACTTTACGCTTCCCCTCATGAGGATCAGTTTCTGCCTCACGCATCTTCCTGTTCAATTCNTCGATTGTTGGTTCGANTAACTCCCATC]




>consensus_7729#1
AACCTTTGACCTTTGGGAACTNGAAAAAACGNCAANAAGTTCCCCAAATTTGTATCTCCA
AGGANTGGATGCACCCCAAACCAANACAAGTTNTCATATCCTTGTTTCTTCCATTTGGCG
AATAGANTTTGCATNGGCTATCTTCTCTTTGATGCAGNATTCANACAGCTCTTTAGAAAT
AGCTTTACGTTTATAATACAAGTCATATATGAACCGAGACCTCTTATGATGGATGCGAAA
NATTGGCCANTCAGCCTCAACTTTACGCTTCCCCTCATGAGGATCAGTTTCTGCCTCACG
CATCTTCCTGTTCAATTCNTCGATTGTTGGTTCGANTAACTCCCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7729#0      AATCACAAGAGTGAGCTGATGTGGTAAGGTCAGTTATGTTTTGAATATATATACACAGAA 60
consensus_7729#1      ------------------------------------------------------------
                                                                                  

consensus_7729#0      CCAAGAAAATAGATAACACTAAAATTAAGTTAAGTTGTGCATCCAAACTCATTGATCATC 120
consensus_7729#1      ------------------------------------------------------------
                                                                                  

consensus_7729#0      CAGAGCAACCACGACAACCGCAACTTTGACACTCCACAACTTTACCTTCTTCTAACTTTG 180
consensus_7729#1      ----------------------------------------------------AACCTTTG 8
                                                                           * *****

consensus_7729#0      ACTTT--GGTACTCGACATAC--GCAATTAGTTCCA-AAATTTGTATCTCTA--GATTGG 233
consensus_7729#1      ACCTTTGGGAACTNGAAAAAACGNCAANAAGTTCCCCAAATTTGTATCTCCAAGGANTGG 68
                      ** **  ** *** ** * *    ***  ******  ************* *  ** ***

consensus_7729#0      ATGCACCTCAAAC-AACACAAGTTTTCATATCCTTGTTTCTTCCATTTGGCGATTAGATT 292
consensus_7729#1      ATGCACCCCAAACCAANACAAGTTNTCATATCCTTGTTTCTTCCATTTGGCGAATAGANT 128
                      ******* ***** ** ******* **************************** **** *

consensus_7729#0      T-GCATCGGCTATCTTCTCTTTGATGCAGAATTCATACAGCTCTTTAGAAATAGCTTTAC 351
consensus_7729#1      TTGCATNGGCTATCTTCTCTTTGATGCAGNATTCANACAGCTCTTTAGAAATAGCTTTAC 188
                      * **** ********************** ***** ************************

consensus_7729#0      GTTTATAATACAAGTCATATATGAACCGAGACCTCTTGTGATGGATGCGAAATATTGGCC 411
consensus_7729#1      GTTTATAATACAAGTCATATATGAACCGAGACCTCTTATGATGGATGCGAAANATTGGCC 248
                      ************************************* ************** *******

consensus_7729#0      ACTCAGCCTCAACTTTACGCTTCCCCTCATGAGGATCAGTTTCTGCCTCACGCATCTTCC 471
consensus_7729#1      ANTCAGCCTCAACTTTACGCTTCCCCTCATGAGGATCAGTTTCTGCCTCACGCATCTTCC 308
                      * **********************************************************

consensus_7729#0      TGTTCAATTCTTCGATTGTTGGTTCGATTAACTCCCATCCTTCGGGTGGCGGTTTTTTAC 531
consensus_7729#1      TGTTCAATTCNTCGATTGTTGGTTCGANTAACTCCCATC--------------------- 347
                      ********** **************** ***********                     

consensus_7729#0      TCCTCCTATAAGGCGCCATTC 552
consensus_7729#1      ---------------------