cluster # 7745

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Schistosoma mansoni
cluster # 7745 cluster # 7745 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7745#0 length = 441 sequences # 4

consensus_7745#1 length = 220 sequences # 1

consensusID : consensus_7745#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 441
fasta sequence

                              [TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTTGTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTATAAGCGCTAAAATCAGGTGACTCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTACGCGTGATAGGACCCAGCTCCAGAACTATGGGAACACATGATACACGTTTCAGGTTGAGTTTCAGATCTTTTAGAAATATG]

[+] EMBL AI394928             [TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTTGTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTATAAGCGCTAAAATCAGGTGACTCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTACGCGTGATAGGACCCAGCTCCAGAACTATGGGAACACATGATACACGTTTCAGGTTGAGTTTCAGATCTTTTAGAAATATG]
[+] EMBL AI395342             [TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTTGTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTATAAGCGCTAAAATCAGGTGACTCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTAC                                                                                ]
[+] EMBL AI395326             [TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTTGTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTATAAGCGCTAAAATCAGGTGACTCAACAGAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAATTTC                                                                                                 ]
[-] EMBL BG930608             [                                                                                                                                             TCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGCTGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGAACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCATTCGTACGCGTGATAGGAC                                                                    ]




>consensus_7745#0
TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTT
GTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTA
TAAGCGCTAAAATCAGGTGACTCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGC
TGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGA
ACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATA
TTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTA
CGCGTGATAGGACCCAGCTCCAGAACTATGGGAACACATGATACACGTTTCAGGTTGAGT
TTCAGATCTTTTAGAAATATG

consensusID : consensus_7745#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [GAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTACGCGTGATAGGACCTTGTGACATAGTATAAATTGTAGTCTAAGCAAACAACAAACCCAGCTCCAAAACTATAAAAACACATGATACACGTTTCATGTTGGGTTTCAGATCTTTTAAAAAATATGACTGGTCCT]

[-] EMBL CD169816             [GAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTACGCGTGATAGGACCTTGTGACATAGTATAAATTGTAGTCTAAGCAAACAACAAACCCAGCTCCAAAACTATAAAAACACATGATACACGTTTCATGTTGGGTTTCAGATCTTTTAAAAAATATGACTGGTCCT]




>consensus_7745#1
GAACTATTCTCATTCCAAACAGATATATTAATCGTGCCTGTGCGATCAGCGACCTTCGCA
GTCCGAACTTCATTGCCATCTTTCGTACGCGTGATAGGACCTTGTGACATAGTATAAATT
GTAGTCTAAGCAAACAACAAACCCAGCTCCAAAACTATAAAAACACATGATACACGTTTC
ATGTTGGGTTTCAGATCTTTTAAAAAATATGACTGGTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7745#0      TTTTTTTTTTTTTTTTGAAAGTATATATGTATATATTTAGAGTTATCTCATTGTTTGTTT 60
consensus_7745#1      ------------------------------------------------------------
                                                                                  

consensus_7745#0      GTTGGTTCACATTTGCTCATTGAACTAGAGTCGCCGGATTTCCCCAACCATTCATCGTTA 120
consensus_7745#1      ------------------------------------------------------------
                                                                                  

consensus_7745#0      TAAGCGCTAAAATCAGGTGACTCAACAAAAGGGAAACAAAATTCTCCAATTTTCATAAGC 180
consensus_7745#1      ------------------------------------------------------------
                                                                                  

consensus_7745#0      TGACCATAACGACCAACATTCAAGTTTAAACAGCCACCCCTTACAGTAGTATTACCCTGA 240
consensus_7745#1      ------------------------------------------------------------
                                                                                  

consensus_7745#0      ACTAGCTGTAAAACATCACATGGAGCAATTAATGAACTATTCTCATTCCAAACAGATATA 300
consensus_7745#1      ---------------------------------GAACTATTCTCATTCCAAACAGATATA 27
                                                       ***************************

consensus_7745#0      TTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTA 360
consensus_7745#1      TTAATCGTGCCTGTGCGATCAGCGACCTTCGCAGTCCGAACTTCATTGCCATCTTTCGTA 87
                      ************************************************************

consensus_7745#0      CGCGTGATAGGACC------------------------------------------CAGC 378
consensus_7745#1      CGCGTGATAGGACCTTGTGACATAGTATAAATTGTAGTCTAAGCAAACAACAAACCCAGC 147
                      **************                                          ****

consensus_7745#0      TCCAGAACTATGGGAACACATGATACACGTTTCAGGTTGAGTTTCAGATCTTTTAGAAA- 437
consensus_7745#1      TCCAAAACTATAAAAACACATGATACACGTTTCATGTTGGGTTTCAGATCTTTTAAAAAA 207
                      **** ******   ******************** **** *************** *** 

consensus_7745#0      TATG--------- 441
consensus_7745#1      TATGACTGGTCCT 220
                      ****