cluster # 7752

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Schistosoma mansoni
cluster # 7752 cluster # 7752 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7752#0 length = 906 sequences # 4

consensus_7752#1 length = 451 sequences # 1

consensusID : consensus_7752#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 906
fasta sequence

                              [TTGCGCGCCAACATCAATTGTTCCCTTTGGGTTGCAGTATTTCTTTCTTCGCCGGATCGCTGAAAACAAAACGTCCGTCTTATAGAGCTTCTTCTGGGTTATGTTTGGACCACACCCACCAAAATCTTTGGGATACTGTATGAAACTCGCGCTACATGAGACCCTTCATAATATAAACCAAAATATATTTCTTACGACTAGACTGTCAAGAACCAGTTATGAGAATTTGGTTGAAGTGGTTTCTCAGTTAAATCAACTGTGTATCACT-CGTTTGGAGAACAGTGTTCTATTGTAAAG-TCGCTCTAAAAAAATGCCAGGAAAACTTTTTGTGGAGATTATCAGCTAAAGTCTTCTGTAGAATTTCAAAGAAAAACCGTTCAGTATACAGAATTTTTGAGCTTATCGAATTTTTGCGGTTATATGATGAGATCATCCGCTTCAAGTCACTGATAGACTCTCAACCTGAGATGCCTGATTTTGCTAAAGAAATTTCTGATGATCCTTGTTGTATCTGTTTGGATAGAGAACCTGACACTGTTCTTGCTTGTATGCACTCATTCTGTCAACCATGTATTCACAAATGGGCCGGAATTAGTTACCAGTTGCCGTCAGCAAGTTCAGAATCGTCTGTTTCTGGTCAAGGATCCAGCAGCTGTAGACCTTCAGATACTAATCGCACACAATGCCCCATCTGTAGGTCTACGTACACAAATACCTCTACATCTTGGGAGTTGATTGGCACTCAGTCACCAAAAAATCATAGATATCAAATCTCAGGTATTGTTTTACGCCTAATCTCACGTACTGGTCGACCATCAGATACATTTCCTGAAGTTGATAATAATCGTACTGATTCCAAAGAAGAAACATCTTTCACAGTTATTGGTCATAAACATAATCCAACAA]

[-] EMBL CD160999             [TTGCGCGCCAACATCAATTGTTCCCTTTGGGTTGCAGTATTTCTTTCTTCGCCGGATCGCTGAAAACAAAACGTCCGTCTTATAGAGCTTCTTCTGGGTTATGTTTGGACCACACCCACCAAAATCTTTGGGATACTGTATGAAACTCGCGCTACATGAGACCCTTCATAATATAAACCAAAATATATTTCTTACGACTAGACTGTCAAGAACCAGTTATGAGAATTTGGTTGAAGTGGTTTCTCAGTTAAATCAACTGTGTATCACTACGTTTGGAGAACAGTGTTCTATTGTAAAGTTCGCTCTAAAAAAATGCCAGGAAAACTTTTTGTGGAGATTATCAGCTAAAGTCTTCTGTAGAATTTCAAAGAAAAACCGTTCAGTATACAGAATTTTTGAGCTTATCGAATTTTTGCGGTTATATGATGAGATCATCCGCTTCAAGTCACTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD083833             [                                                                                                                                                                                                                                                                           c gaggTGGAGAACAGTGTTCTATTGTAAAG TCGCTCTAAAAAAATGCCAGGAAAACTTTTTCTGGAGATTATCAGCTAAAGTCTTCTGTAGAATTTCAAAGAAAAACCGTTCAGTATACAGAATTTTTGAGCTTATCGAATTTTTGCGGTTATATGATGAGATCATCCGCTTCAAGTCACTGATAGACTCTCAACCTGAGATGCCTGATTTTGCTAAAGAAATTTCTGATGATCCTTGTTGTATCTGTTTGGATAGAGAACCTGACACTGTTCTTGCTTGTATGCACTCATTCTGTCAACCATGTATTCACAAATGGGCCGGAATTAGTTACCAGTTGCCGTCAGCAAGTTCAGAATCGTCTGTTTCTGGTCAAGGATCCAGCAGCTGTAGACCTTCAGATACTAATCGCACACAATGCCCCATCTGTAGGTCTACGTACACAAATACCTCTACATCTTGGGAGTTGATTGGCACTCAGTCACCAAAAAAT                                                                                                                                                    ]
[+] EMBL CD083441             [                                                                                                                                                                                                                                                                                                                                                            gGTCTTCTGTAGAATTTCAAAGAAAAA CGTTCAGTATACAGAATTTTTGAGCTTATCGAATTTTTGCGGTTATATGATGAGATCATCCGCTTCAAGTCACTGATAGACTCTCAACCTGAGATGCCTGATTTTGCTAAAGAAATTTCTGATGATCCTTGTTGTATCTGTTTGGATAGAGAACCTGACACTGTTCTTGCTTGTATGCACTCATTCTGTCAACCATGTATTCACAAATGGGCCGGAATTAGTTACCAGTTGCCGTCAGCAAGTTCAGAATCGTCTGTTTCTGGTCAAGGATCCAGCAGCTGTAGACCTTCAGATACTAATCGCACACAATGCCCCATCTGTAGGTCTACGTACACAAATACCTCTACATCTTGGGAGTTGATTGGCACTCAGTCACCAAAAAATCATAGATATCAAATCTCAGGTATTGTTTTACGCCTAATCTCACGTACTGGTCGACCATCAGATACATTTCCTGAAGTT                                                                      ]
[-] EMBL CD115801             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCTTGCTTGTATGCACTCATTCTGTCAACCAGGTATTCACAAATGGGCCGGAATTAGTTACCAGTTGCCGTCAGCAAGTTCAGAATCGTCTGTTTCTGGTCAAGGATCCAGCAGCTGTAGACCTTCAGATACTAATCGCACACAATGCCCCATCTGTAGGTCTACGTACACAAATACCTCTACATCTTGGGAGTTGATTGGCACTCAGTCACCAAAAAATCATAGATATCAAATCTCAGGTATTGTTTTACGCCTAATCTCACGTACTGGTCGACCATCAGATACATTTCCTGAAGTTGATAATAATCGTACTGATTCCAAAGAAGAAACATCTTTCACAGTTATTGGTCATAAACATAATCCAACAA]




>consensus_7752#0
TTGCGCGCCAACATCAATTGTTCCCTTTGGGTTGCAGTATTTCTTTCTTCGCCGGATCGC
TGAAAACAAAACGTCCGTCTTATAGAGCTTCTTCTGGGTTATGTTTGGACCACACCCACC
AAAATCTTTGGGATACTGTATGAAACTCGCGCTACATGAGACCCTTCATAATATAAACCA
AAATATATTTCTTACGACTAGACTGTCAAGAACCAGTTATGAGAATTTGGTTGAAGTGGT
TTCTCAGTTAAATCAACTGTGTATCACTCGTTTGGAGAACAGTGTTCTATTGTAAAGTCG
CTCTAAAAAAATGCCAGGAAAACTTTTTGTGGAGATTATCAGCTAAAGTCTTCTGTAGAA
TTTCAAAGAAAAACCGTTCAGTATACAGAATTTTTGAGCTTATCGAATTTTTGCGGTTAT
ATGATGAGATCATCCGCTTCAAGTCACTGATAGACTCTCAACCTGAGATGCCTGATTTTG
CTAAAGAAATTTCTGATGATCCTTGTTGTATCTGTTTGGATAGAGAACCTGACACTGTTC
TTGCTTGTATGCACTCATTCTGTCAACCATGTATTCACAAATGGGCCGGAATTAGTTACC
AGTTGCCGTCAGCAAGTTCAGAATCGTCTGTTTCTGGTCAAGGATCCAGCAGCTGTAGAC
CTTCAGATACTAATCGCACACAATGCCCCATCTGTAGGTCTACGTACACAAATACCTCTA
CATCTTGGGAGTTGATTGGCACTCAGTCACCAAAAAATCATAGATATCAAATCTCAGGTA
TTGTTTTACGCCTAATCTCACGTACTGGTCGACCATCAGATACATTTCCTGAAGTTGATA
ATAATCGTACTGATTCCAAAGAAGAAACATCTTTCACAGTTATTGGTCATAAACATAATC
CAACAA

consensusID : consensus_7752#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [TTGCGCGCCAACATCAATTGTTCCCTTTGGGTTGCAGTATTTCTTTCTTCGCCGGATCGCTGAAAACAAAACGTCCGTCTTATAGAGCTTCTTCTGGGTTATGTTTGGCCCACACCCACCAAAATCTTTGGGATACTGTATGAAACTCGCGCTACATGAGGCCCTTCATAATATAAACCTAAATATATTTCTTGGGATTAGCCTGTCAAGAACCAGTTATGAGAATTGGGTCGAAGTGGTTTCTCAGTTAAATCCCCTGTGTATCTATACGTGTGGAGAACAGTGCTGTATTGTAAAGTTCGCTCTCAAAAAATGCCAGGAAAACTTTTTCTGAAGATTATCAGATATAGTATTCTGTACAATTTCAAATAAAAACCGTTCAGTATGCAGAATTTTTGAGCTCATCGGATTTAGGCGGTTATATGATGAGATCATCCGCTTCAAGTCAATG]

[-] EMBL CD161088             [TTGCGCGCCAACATCAATTGTTCCCTTTGGGTTGCAGTATTTCTTTCTTCGCCGGATCGCTGAAAACAAAACGTCCGTCTTATAGAGCTTCTTCTGGGTTATGTTTGGCCCACACCCACCAAAATCTTTGGGATACTGTATGAAACTCGCGCTACATGAGGCCCTTCATAATATAAACCTAAATATATTTCTTGGGATTAGCCTGTCAAGAACCAGTTATGAGAATTGGGTCGAAGTGGTTTCTCAGTTAAATCCCCTGTGTATCTATACGTGTGGAGAACAGTGCTGTATTGTAAAGTTCGCTCTCAAAAAATGCCAGGAAAACTTTTTCTGAAGATTATCAGATATAGTATTCTGTACAATTTCAAATAAAAACCGTTCAGTATGCAGAATTTTTGAGCTCATCGGATTTAGGCGGTTATATGATGAGATCATCCGCTTCAAGTCAATG]




>consensus_7752#1
TTGCGCGCCAACATCAATTGTTCCCTTTGGGTTGCAGTATTTCTTTCTTCGCCGGATCGC
TGAAAACAAAACGTCCGTCTTATAGAGCTTCTTCTGGGTTATGTTTGGCCCACACCCACC
AAAATCTTTGGGATACTGTATGAAACTCGCGCTACATGAGGCCCTTCATAATATAAACCT
AAATATATTTCTTGGGATTAGCCTGTCAAGAACCAGTTATGAGAATTGGGTCGAAGTGGT
TTCTCAGTTAAATCCCCTGTGTATCTATACGTGTGGAGAACAGTGCTGTATTGTAAAGTT
CGCTCTCAAAAAATGCCAGGAAAACTTTTTCTGAAGATTATCAGATATAGTATTCTGTAC
AATTTCAAATAAAAACCGTTCAGTATGCAGAATTTTTGAGCTCATCGGATTTAGGCGGTT
ATATGATGAGATCATCCGCTTCAAGTCAATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7752#0      TTGCGCGCCAACATCAATTGTTCCCTTTGGGTTGCAGTATTTCTTTCTTCGCCGGATCGC 60
consensus_7752#1      TTGCGCGCCAACATCAATTGTTCCCTTTGGGTTGCAGTATTTCTTTCTTCGCCGGATCGC 60
                      ************************************************************

consensus_7752#0      TGAAAACAAAACGTCCGTCTTATAGAGCTTCTTCTGGGTTATGTTTGGACCACACCCACC 120
consensus_7752#1      TGAAAACAAAACGTCCGTCTTATAGAGCTTCTTCTGGGTTATGTTTGGCCCACACCCACC 120
                      ************************************************ ***********

consensus_7752#0      AAAATCTTTGGGATACTGTATGAAACTCGCGCTACATGAGACCCTTCATAATATAAACCA 180
consensus_7752#1      AAAATCTTTGGGATACTGTATGAAACTCGCGCTACATGAGGCCCTTCATAATATAAACCT 180
                      **************************************** ****************** 

consensus_7752#0      AAATATATTTCTTACGACTAGACTGTCAAGAACCAGTTATGAGAATTTGGTTGAAGTGGT 240
consensus_7752#1      AAATATATTTCTTGGGATTAGCCTGTCAAGAACCAGTTATGAGAATTGGGTCGAAGTGGT 240
                      *************  ** *** ************************* *** ********

consensus_7752#0      TTCTCAGTTAAATCAACTGTGTATC-ACTCGTTTGGAGAACAGTGTTCTATTGTAAAGT- 298
consensus_7752#1      TTCTCAGTTAAATCCCCTGTGTATCTATACGTGTGGAGAACAGTGCTGTATTGTAAAGTT 300
                      **************  ********* *  *** ************ * *********** 

consensus_7752#0      CGCTCTAAAAAAATGCCAGGAAAACTTTTTGTGGAGATTATCAGCTAAAGTCTTCTGTAG 358
consensus_7752#1      CGCTCTCAAAAAATGCCAGGAAAACTTTTTCTGAAGATTATCAGATATAGTATTCTGTAC 360
                      ****** *********************** ** ********** ** *** ******* 

consensus_7752#0      AATTTCAAAGAAAAACCGTTCAGTATACAGAATTTTTGAGCTTATCGAATTTTTGCGGTT 418
consensus_7752#1      AATTTCAAATAAAAACCGTTCAGTATGCAGAATTTTTGAGCTCATCGGATTTAGGCGGTT 420
                      ********* **************** *************** **** ****  ******

consensus_7752#0      ATATGATGAGATCATCCGCTTCAAGTCACTGATAGACTCTCAACCTGAGATGCCTGATTT 478
consensus_7752#1      ATATGATGAGATCATCCGCTTCAAGTCAATG----------------------------- 451
                      **************************** **                             

consensus_7752#0      TGCTAAAGAAATTTCTGATGATCCTTGTTGTATCTGTTTGGATAGAGAACCTGACACTGT 538
consensus_7752#1      ------------------------------------------------------------
                                                                                  

consensus_7752#0      TCTTGCTTGTATGCACTCATTCTGTCAACCATGTATTCACAAATGGGCCGGAATTAGTTA 598
consensus_7752#1      ------------------------------------------------------------
                                                                                  

consensus_7752#0      CCAGTTGCCGTCAGCAAGTTCAGAATCGTCTGTTTCTGGTCAAGGATCCAGCAGCTGTAG 658
consensus_7752#1      ------------------------------------------------------------
                                                                                  

consensus_7752#0      ACCTTCAGATACTAATCGCACACAATGCCCCATCTGTAGGTCTACGTACACAAATACCTC 718
consensus_7752#1      ------------------------------------------------------------
                                                                                  

consensus_7752#0      TACATCTTGGGAGTTGATTGGCACTCAGTCACCAAAAAATCATAGATATCAAATCTCAGG 778
consensus_7752#1      ------------------------------------------------------------
                                                                                  

consensus_7752#0      TATTGTTTTACGCCTAATCTCACGTACTGGTCGACCATCAGATACATTTCCTGAAGTTGA 838
consensus_7752#1      ------------------------------------------------------------
                                                                                  

consensus_7752#0      TAATAATCGTACTGATTCCAAAGAAGAAACATCTTTCACAGTTATTGGTCATAAACATAA 898
consensus_7752#1      ------------------------------------------------------------
                                                                                  

consensus_7752#0      TCCAACAA 906
consensus_7752#1      --------