cluster # 7753

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Schistosoma mansoni
cluster # 7753 cluster # 7753 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7753#0 length = 918 sequences # 2

consensus_7753#1 length = 523 sequences # 1
consensus_7753#2 length = 493 sequences # 2

consensusID : consensus_7753#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 918
fasta sequence

                              [ACTTCGGCACGAGGACTGATCTAGATCGGTTAGCTAAAGAAGCACAATCTTTATGGCTTTCATGTGAAGCTTTAGCCTGTCGATTGCATTCAGATAGCCCATCAATGAAATCTCACCATGAAACAAAAAGCGATTCAATTGTACTGAATCAAACTGGATCTTTAAAAGATTTTGTCAATTCCATTCGTGAATGCACCGCTATCGGAAATTACCCTTTTGTCAATATAATTCTAGACAGTCTGTCTAATGATATAGTGGAAAATGGAGTTTGGACAGAAAATGGGTTGAAGAAGAGATTTGAAAAGGTATTTAACGTCTGTAGAAATGTTGCATTAATTGATGAAACAAGTGGCTCACTATGGGAATATGCTTTATCATGGCTACAGTCTATATTAGTAGTAGATGTGAAATATAAATGTTTGGAAGCGATTTCACGTATTAAACCAAATATTATTGGTAGTCCTTATGTTCAATACATTAAAGATTATGATACAACAAAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTATCTAGTGCCAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACCTCTAGCGATGAAGCACTTGAAACGGCTGTACGATTGTTAGGTCAGTTGCGTGGTCAATCTCGTGTTGTTGCAATGATTGGCTAGTTGATGCTCGACACTATTTAGAAGCTAAACAACTGCTAGAACGTTATTAGCCTATGTGCAGCTCGTGATATTCTACTTTCCAAAACGTCTATATCGTTTTTGAAAGAACCATTAGAAGGCTTATCATATTATCATTCTATATCGGTCTTGGGACTGGCTGATCTTCTATGAGCATTTTTGTGAATAGATTTAATTTTGATGAAGGATTCTAATTGNATTACCTTATTAATGTCCNGGA]

[+] EMBL CD081456             [ACTTCGGCACGAGGACTGATCTAGATCGGTTAGCTAAAGAAGCACAATCTTTATGGCTTTCATGTGAAGCTTTAGCCTGTCGATTGCATTCAGATAGCCCATCAATGAAATCTCACCATGAAACAAAAAGCGATTCAATTGTACTGAATCAAACTGGATCTTTAAAAGATTTTGTCAATTCCATTCGTGAATGCACCGCTATCGGAAATTACCCTTTTGTCAATATAATTCTAGACAGTCTGTCTAATGATATAGTGGAAAATGGAGTTTGGACAGAAAATGGGTTGAAGAAGAGATTTGAAAAGGTATTTAACGTCTGTAGAAATGTTGCATTAATTGATGAAACAAGTGGCTCACTATGGGAATATGCTTTATCATGGCTACAGTCTATATTAGTAGTAGATGTGAAATATAAATGTTTGGAAGCGATTTCACGTATTAAACCAAATATTATTGGTAGTCCTTATGTTCAATACATTAAAGATTATGATACAACAAAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTATCTAGTGCCAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACCTCTAGCGATGAAGCACTTGAAACGGCTGTACGATTGTTAGGTCAGTTGCGTGGTCAATCTCGTGTTGTTGCAATGATTGGCTAGTTGATGCTCGACACTATTTAGAAGCTAAACAACTGCTAGAACGTTATTAGCCTATGTGCAGCTCGTGATATTCTACTTTCCAAAACGTCTATATCGTTTTTGAAAGAACCATTAGAAGGCTTATCATATTATCATTCTATATCGGTCTTGGGACTGGCTGATCTTCTATGAGCATTTTTGTGAATAGATTTAATTTTGATGAAGGATTCTAATTGNATTACCTTATTAATGTCCNGGA]
[+] EMBL CD197879             [                                                                                                                                                                                                                                                          TATAGTGGAAAATGGAGTTTGGACAGAAAATGGGTTGAAGAAGAGATTTGAAAAGGTATTTAACGTCTGTAGAAATGTTGCATTAATTGATGAAACAAGTGGCTCACTATGGGAATATGCTTTATCATGGCTACAGTCTATATTAGTAGTAGATGTGAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]




>consensus_7753#0
ACTTCGGCACGAGGACTGATCTAGATCGGTTAGCTAAAGAAGCACAATCTTTATGGCTTT
CATGTGAAGCTTTAGCCTGTCGATTGCATTCAGATAGCCCATCAATGAAATCTCACCATG
AAACAAAAAGCGATTCAATTGTACTGAATCAAACTGGATCTTTAAAAGATTTTGTCAATT
CCATTCGTGAATGCACCGCTATCGGAAATTACCCTTTTGTCAATATAATTCTAGACAGTC
TGTCTAATGATATAGTGGAAAATGGAGTTTGGACAGAAAATGGGTTGAAGAAGAGATTTG
AAAAGGTATTTAACGTCTGTAGAAATGTTGCATTAATTGATGAAACAAGTGGCTCACTAT
GGGAATATGCTTTATCATGGCTACAGTCTATATTAGTAGTAGATGTGAAATATAAATGTT
TGGAAGCGATTTCACGTATTAAACCAAATATTATTGGTAGTCCTTATGTTCAATACATTA
AAGATTATGATACAACAAAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTATCTA
GTGCCAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACCTCTA
GCGATGAAGCACTTGAAACGGCTGTACGATTGTTAGGTCAGTTGCGTGGTCAATCTCGTG
TTGTTGCAATGATTGGCTAGTTGATGCTCGACACTATTTAGAAGCTAAACAACTGCTAGA
ACGTTATTAGCCTATGTGCAGCTCGTGATATTCTACTTTCCAAAACGTCTATATCGTTTT
TGAAAGAACCATTAGAAGGCTTATCATATTATCATTCTATATCGGTCTTGGGACTGGCTG
ATCTTCTATGAGCATTTTTGTGAATAGATTTAATTTTGATGAAGGATTCTAATTGNATTA
CCTTATTAATGTCCNGGA

consensusID : consensus_7753#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence

                              [ACGGACGAGACATGAAATTGAAAGACATAATGGTTACGAGAAGCTCGTGATGCTAAAGAACATGAATTGAAATTAGCACTGGCGAGACATAGTGAACATCTTTCACATATGTTACAATTACAGAAAGATAAAATGGAGCATCAATTCGCACATCAACTACGTGAAGAGTTAGCAAAAGAAAGAGTTGCTTTTGAAGCTGCTCTTATCGGTTGGACTAAGCGTATGGAAGCCATAGAAGATGTTGTGGATGGAAGAGCTGATCTAGATCGGTTAGCTAAAGAAGCACAATCATTATGGCTTTCATGTGAAGCTTTAGCCTGTCGATTGCATTCAGATAGCCCATCAATGAAATCTCACCATGAAACAAAAAGCGATTCAATTGTACTGAATCAAACTGGATCTTTAAAAGATTTTGTCAATTCCATTCGTGAATGCACCGCTTCCGGAAATTACCCTTTTGTCAATATAATTCTAGACAGTCTGTCTAATGATATAGTGGAAAATGGAGTTTGGACCGAAAATG]

[+] EMBL CD084325             [ACGGACGAGACATGAAATTGAAAGACATAATGGTTACGAGAAGCTCGTGATGCTAAAGAACATGAATTGAAATTAGCACTGGCGAGACATAGTGAACATCTTTCACATATGTTACAATTACAGAAAGATAAAATGGAGCATCAATTCGCACATCAACTACGTGAAGAGTTAGCAAAAGAAAGAGTTGCTTTTGAAGCTGCTCTTATCGGTTGGACTAAGCGTATGGAAGCCATAGAAGATGTTGTGGATGGAAGAGCTGATCTAGATCGGTTAGCTAAAGAAGCACAATCATTATGGCTTTCATGTGAAGCTTTAGCCTGTCGATTGCATTCAGATAGCCCATCAATGAAATCTCACCATGAAACAAAAAGCGATTCAATTGTACTGAATCAAACTGGATCTTTAAAAGATTTTGTCAATTCCATTCGTGAATGCACCGCTTCCGGAAATTACCCTTTTGTCAATATAATTCTAGACAGTCTGTCTAATGATATAGTGGAAAATGGAGTTTGGACCGAAAATG]




>consensus_7753#1
ACGGACGAGACATGAAATTGAAAGACATAATGGTTACGAGAAGCTCGTGATGCTAAAGAA
CATGAATTGAAATTAGCACTGGCGAGACATAGTGAACATCTTTCACATATGTTACAATTA
CAGAAAGATAAAATGGAGCATCAATTCGCACATCAACTACGTGAAGAGTTAGCAAAAGAA
AGAGTTGCTTTTGAAGCTGCTCTTATCGGTTGGACTAAGCGTATGGAAGCCATAGAAGAT
GTTGTGGATGGAAGAGCTGATCTAGATCGGTTAGCTAAAGAAGCACAATCATTATGGCTT
TCATGTGAAGCTTTAGCCTGTCGATTGCATTCAGATAGCCCATCAATGAAATCTCACCAT
GAAACAAAAAGCGATTCAATTGTACTGAATCAAACTGGATCTTTAAAAGATTTTGTCAAT
TCCATTCGTGAATGCACCGCTTCCGGAAATTACCCTTTTGTCAATATAATTCTAGACAGT
CTGTCTAATGATATAGTGGAAAATGGAGTTTGGACCGAAAATG

consensusID : consensus_7753#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 493
fasta sequence

                              [GTCCTTATGTTCAATACATTAAAGATTATGATACA-ACAAAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTATCTAGTGCCAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACCTCTAGCGATGAAGCACTTGAAACGGCTGTACGATTGTTAGGTCAGTTGCGTGGTCAATCTCGTGTTGTTGCAAATGATTGGCTAGTTGATGCTCGACACTATTTAGAAGCTAAACAAACTGCTAGAACGTTATTAGCCTATGTTGCAGCTCGTGATATTTCTACTTTCCAAAAACGTCTATAATCGTTTTTGAAAAGAACCATTTAGAAGGGCTATATCATTATTTATCATTCTTATTATCGTTCTTGGGTACTGTCTGAATCTTCTCATGAGGCATCTTTTGTGAAATTAGTATTTAATTTTTGTATGAAGTGAATTCTAATTTGTAATTAGCCTTATTTAAATGTACGTGAATA]

[-] EMBL CD075281             [GTCCTTATGTTCAATACATTAAAGATTATGATACA ACAAAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTATCTAGTGCCAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACCTCTAGCGATGAAGCACTTGAAACGGCTGTACGATTGTTAGGTCAGTTGCGTGGTCAATCTCGTGTTGTTGCAAATGATTGGCTAGTTGATGCTCGACACTATTTAGAAGCTAAACAAACTGCTAGAACGTTATTAGCCTATGTTGCAGCTCGTGATATTTCTACTTTCCAAAAACGTCTATAATCGTTTTTGAAAAGAACCATTTAGAAGGGCTATATCATTATTTATCATTCTTATTATCGTTCTTGGGTACTGTCTGAATCTTCTCATGAGGCATCTTTTGTGAAATTAGTATTTAATTTTTGTATGAAGTGAATTCTAATTTGTAATTAGCCTTATTTAAATGTACGTGAATA]
[+] EMBL CD135804             [                         TTATGATACAGGGGGAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTATCTAGTGCCAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACCTCTAGCGATGAAGCACTTGAAACGGCTGTACGATTGTTAGGTCAGTTGCGTGGTCAATCTCGTGTTGTTGCAAAT                                                                                                                                                                                                                                                                                         ]




>consensus_7753#2
GTCCTTATGTTCAATACATTAAAGATTATGATACAACAAAACAGACGGACTCGAGACCAG
ATTCATTTCATTTGTTATCTAGTGCCAAATTCGCTATGAATAGTGACCATAATATCTTTT
CAGGTGACGAGAATACCTCTAGCGATGAAGCACTTGAAACGGCTGTACGATTGTTAGGTC
AGTTGCGTGGTCAATCTCGTGTTGTTGCAAATGATTGGCTAGTTGATGCTCGACACTATT
TAGAAGCTAAACAAACTGCTAGAACGTTATTAGCCTATGTTGCAGCTCGTGATATTTCTA
CTTTCCAAAAACGTCTATAATCGTTTTTGAAAAGAACCATTTAGAAGGGCTATATCATTA
TTTATCATTCTTATTATCGTTCTTGGGTACTGTCTGAATCTTCTCATGAGGCATCTTTTG
TGAAATTAGTATTTAATTTTTGTATGAAGTGAATTCTAATTTGTAATTAGCCTTATTTAA
ATGTACGTGAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7753#0      ACTTCGGCACGAGGACTGATCTAGATCGGTTAGCTAAAGAAGCACAATCTTTATGGCTTT 60
consensus_7753#2      ------------------------------------------------------------
consensus_7753#1      ------------------------------------------------------------
                                                                                  

consensus_7753#0      CATGTGAAGCTTTAGCCTGTCGATTGCATTCAGATAGCCCATCAATGAAATCTCACCATG 120
consensus_7753#2      ------------------------------------------------------------
consensus_7753#1      ------------------------------------------------------------
                                                                                  

consensus_7753#0      AAACAAAAAGCGATTCAATTGTACTGAATCAAACTGGATCTTTAAAAGATTTTGTCAATT 180
consensus_7753#2      ------------------------------------------------------------
consensus_7753#1      ------------------------------------------------------------
                                                                                  

consensus_7753#0      CCATTCGTGAATGCACCGCTATCGGAAATTACCCTTTTGTCAATATAATTCTAGACAGTC 240
consensus_7753#2      ------------------------------------------------------------
consensus_7753#1      ------------------------------------------------------------
                                                                                  

consensus_7753#0      TGTCTAATGATATAGTGGAAAATGGAGTTTGGACAGAAAATGGGTTGAAGAAGAGATTTG 300
consensus_7753#2      ------------------------------------------------------------
consensus_7753#1      ------------------------------------------------------------
                                                                                  

consensus_7753#0      AAAAGGTATTTAACGTCTGTAGAAATGTTGCATTAATTGATGAAACAAGTGGCTCACTAT 360
consensus_7753#2      ------------------------------------------------------------
consensus_7753#1      ------------------------------------------------------------
                                                                                  

consensus_7753#0      GGGAATATGCTTTATCATGGCTACAGTCTATATTAGTAGTAGATGTGAAATATAAATGTT 420
consensus_7753#2      ------------------------------------------------------------
consensus_7753#1      ------------------------------------------------------------
                                                                                  

consensus_7753#0      TGGAAGCGATTTCACGTATTAAACCAAATATTATTGGTAGTCCTTATGTTCAATACATTA 480
consensus_7753#2      ---------------------------------------GTCCTTATGTTCAATACATTA 21
consensus_7753#1      -------------------------------ACGGACGAGACATGAAATTGAAAGACATA 29
                                                             * * * *  ** **     **

consensus_7753#0      AAGATTATGATACA---ACAAAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTAT 537
consensus_7753#2      AAGATTATGATACA---ACAAAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTAT 78
consensus_7753#1      ATGGTTACGAGAAGCTCGTGATGCTAAAGAACATGA-ATTGAAATTAGCACTGGCGAGAC 88
                      * * *** ** *        *  *  * * **  ** *    * * *   *    *  * 

consensus_7753#0      CTAGTGC-CAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACC 596
consensus_7753#2      CTAGTGC-CAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACC 137
consensus_7753#1      ATAGTGAACATCTTTCACATATGTTACAATTACAGAAAGATAAAATGGAGCATCAATTCG 148
                       *****  **  **    **   *    *  * *  *   *   * *   *   *** * 

consensus_7753#0      TCTAGCGA-----TGAAGCACTTGAAACGGCTGTA--CGATTGTTAGGTCAGTTGCGT-G 648
consensus_7753#2      TCTAGCGA-----TGAAGCACTTGAAACGGCTGTA--CGATTGTTAGGTCAGTTGCGT-G 189
consensus_7753#1      CACATCAACTACGTGAAGAGTTAGCAAAAGAAAGAGTTGCTTTTGAAGCTGCTCTTATCG 208
                         * * *     *****   * * **  *    *   * ** * * *    *    * *

consensus_7753#0      GTCAATCT---CGTGTTGTTGCAA-TGATTGGCTAGTTGATGCTCGACACTATTTAGA-- 702
consensus_7753#2      GTCAATCT---CGTGTTGTTGCAAATGATTGGCTAGTTGATGCTCGACACTATTTAGA-- 244
consensus_7753#1      GTTGGACTAAGCGTATGGAAGCCATAGAAGATGTTGTGGATGGAAGAGCTGATCTAGATC 268
                      **    **   *** * *  ** *  **     * ** ****   **    ** ****  

consensus_7753#0      AGCTAAACAA-CTGCTAGAACGTTATTAGCCTATGT--GCAGCTCGTGATATT---CTAC 756
consensus_7753#2      AGCTAAACAAACTGCTAGAACGTTATTAGCCTATGT-TGCAGCTCGTGATATTT--CTAC 301
consensus_7753#1      GGTTAGCTAAAGAAGCACAATCATTATGGCTTTCATGTGAAGCTTTAGCCTGTCGATTGC 328
                       * **   **      * **   *  * ** *   *  * ****   *    *    * *

consensus_7753#0      TTTCCAAAA-CGTCTATA-TCGTTTTTGAAA-GAACCATT-AGAAGGCTTATCATATTAT 812
consensus_7753#2      TTTCCAAAAACGTCTATAATCGTTTTTGAAAAGAACCATTTAGAAGGGCTATATCATTAT 361
consensus_7753#1      ATTCAGATAGCCCATCAATGAAATCTCACCATGAAACAA--AAAGCGATTCAATTGTACT 386
                       ***  * * *   *  *     * *    * *** **   * *  *  *      *  *

consensus_7753#0      ----CATTCTA--TATCGGTCTTGGG-ACTGGCTGA-TCTTCT-ATGAG--CAT-TTTTG 860
consensus_7753#2      TTATCATTCTTATTATCGTTCTTGGGTACTGTCTGAATCTTCTCATGAG-GCATCTTTTG 420
consensus_7753#1      GAATCAAACTGG--ATCTTTAAAAGATTTTGTC-AATTCCATTCGTGAATGCACCGCTTC 443
                          **  **    ***  *    *    ** *  * **   *  ***   **    ** 

consensus_7753#0      TGAA--TAG-ATTTAATTTTG--ATGAAG--GATTCTAATTGN--ATTA-CCTTATT--A 908
consensus_7753#2      TGAAATTAGTATTTAATTTTTGTATGAAGTGAATTCTAATTTGTAATTAGCCTTATTTAA 480
consensus_7753#1      CGGA------AATTACCCTTT-TGTCAATATAATTCTAGACAGTCTGTCTAATGATATAG 496
                       * *      * ***   **    * **    ******         *    * **    

consensus_7753#0      ATGTCCNGGA----------------- 918
consensus_7753#2      ATGTACGTGAATA-------------- 493
consensus_7753#1      TGGAAAATGGAGTTTGGACCGAAAATG 523
                        *     *