cluster # 7769

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Schistosoma mansoni
cluster # 7769 cluster # 7769 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7769#0 length = 360 sequences # 4

consensus_7769#1 length = 258 sequences # 1

consensusID : consensus_7769#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 360
fasta sequence

                              [CATAGATGAATGAAATGAAGATGGTGGTGTACCACCAGATGATGACAGAGTACCAACTGAACCAACAGCTACAAGATGATGACGATTTACTTGATTTGTTACATTACGCCAGTGGGAAGATGAATCGTTAATTATTGAATTTTGATTGCGTGGTGGACAACAACTGCACAGACAAGTATGAAATCTAGCTCTACCTCCAATTAAGAACGGTGAATCTAGCGCCTGTTCAGCAGTTAACCGCTTCGATGAGCTAAAACTTAG-AAGTCCTGTAAACAAATTAACTANATCAGGATCAGGTGGATTTTCTGTAGATGACTGANAATATTGAGTATTAGCCGGAACGAGTATTCTTGAACAGCA]

[-] EMBL CD156380             [CATAGATGAATGAAATGAAGATGGTGGTGTACCACCAGATGATGACAGAGTACCAACTGAACCAACAGCTACAAGATGATGACGATTTACTTGATTTGTTACATTACGCCAGTGGGAAGATGAATCGTTAATTATTGAATTTTGATTGCGTGGTGGACAACAACTGCACAGACAAGTATGAAATCTAGCTCTACCTCCAATTAAGAACGGTGAATCTAGCGCCTGTTCAGCAGTTAACCGCTTCGATGAGCTAAAACTTAG AAGTCCTGTAAACAAATTAACTAAATCA                                                                       ]
[+] EMBL CD090417             [                       GTGGTGTACCACCAGATGATGACAGAGTACCAACTGAACCAACAGCTACAAGATGATGACGATTTACTTGATTTGTTACATTACGCCAGTGGGAAGATGAATCGTTAATTATTGAATTTTGATTGCGTGGTGGACAACAACTGCACAGACAAGTATGAAATCTAGCTCTACCTCCAATTAAGAACGGTGAATCTAGCGCCTGTTCAGCAGTTAACCGCTTCGATGAGCTAAAACTTAG AAGTCCTGTAAACAAATTAACTANATCAGGATCAGGTGG                                                            ]
[+] EMBL CD090342             [                       GTGGTGTACCACCAGATGATGACAGAGTACCAACTGAACCAACAGCTACAAGATGATGACGATTTACTTGATTTGTTACATTACGCCAGTGGGAAGATGAATCGTTAATTATTGAATTTTGATTGCGTGGTGGACAACAACTGCACAGACAAGTATGAAATCTAGCTCTACCTCCAATTAAGAACGGTGAATCTAGCGCCTGTTCAGCAGTTAACCGCTTCGATGAGCTAAGACTTAGAAAGTCtg                                                                                            ]
[+] EMBL CD090413             [                               CCACCAGACGGTGACAGAGTACCAACTGAACCAACAGCTACAAGATGATGACGATTTACTTGATTTGTTACATTACGCCAGTGGGAAGATGAATCGTTAATTATTGAATTTTGATTGCGTGGTGGACAACAACTGCACAGACAAGTATGAAATCTAGCTCTACCTCCAATTAAGAACGGTGAATCTAGCGCCTGTTCAGCAGTTAACCGCTTCGATGAGCTAAAACTTAG AAGTCCTGTAAAC AATTAACTANATCAGGATCAGGTGGATTTTCTGTAGATGACTGANAATATTGAGTATTAGCCGGAACGAGTATTCTTGAACAGCA]




>consensus_7769#0
CATAGATGAATGAAATGAAGATGGTGGTGTACCACCAGATGATGACAGAGTACCAACTGA
ACCAACAGCTACAAGATGATGACGATTTACTTGATTTGTTACATTACGCCAGTGGGAAGA
TGAATCGTTAATTATTGAATTTTGATTGCGTGGTGGACAACAACTGCACAGACAAGTATG
AAATCTAGCTCTACCTCCAATTAAGAACGGTGAATCTAGCGCCTGTTCAGCAGTTAACCG
CTTCGATGAGCTAAAACTTAGAAGTCCTGTAAACAAATTAACTANATCAGGATCAGGTGG
ATTTTCTGTAGATGACTGANAATATTGAGTATTAGCCGGAACGAGTATTCTTGAACAGCA

consensusID : consensus_7769#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence

                              [GTTGCCAGACACGACGGCGACAGAGTACCAACTGAACCAACAGCTACAAGATGATGACGATTTACTTGATTTGTTACATTACGCCAGTGGGAAGATGAATCGTTAATTATTGAATTTTGATTGCGTGGTGGACAACAACTGCACAGACAAGTATGAAATCTAGCTCTACCTCCAATTAAGAACGGTGAATCTAGCGCCTGTTCAGCAGTTAACCGCTTCGATGAGCTAAAACTTAGAGTCCTGTAACAAATTACTAAA]

[+] EMBL CD090414             [GTTGCCAGACACGACGGCGACAGAGTACCAACTGAACCAACAGCTACAAGATGATGACGATTTACTTGATTTGTTACATTACGCCAGTGGGAAGATGAATCGTTAATTATTGAATTTTGATTGCGTGGTGGACAACAACTGCACAGACAAGTATGAAATCTAGCTCTACCTCCAATTAAGAACGGTGAATCTAGCGCCTGTTCAGCAGTTAACCGCTTCGATGAGCTAAAACTTAGAGTCCTGTAACAAATTACTAAA]




>consensus_7769#1
GTTGCCAGACACGACGGCGACAGAGTACCAACTGAACCAACAGCTACAAGATGATGACGA
TTTACTTGATTTGTTACATTACGCCAGTGGGAAGATGAATCGTTAATTATTGAATTTTGA
TTGCGTGGTGGACAACAACTGCACAGACAAGTATGAAATCTAGCTCTACCTCCAATTAAG
AACGGTGAATCTAGCGCCTGTTCAGCAGTTAACCGCTTCGATGAGCTAAAACTTAGAGTC
CTGTAACAAATTACTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7769#0      CATAGATGAATGAAATGAAGATGGTGGTGTACCACCAGATGATGACAGAGTACCAACTGA 60
consensus_7769#1      -------------------------GTTGCCAGACACGACGGCGACAGAGTACCAACTGA 35
                                               * **    **  ** *  *****************

consensus_7769#0      ACCAACAGCTACAAGATGATGACGATTTACTTGATTTGTTACATTACGCCAGTGGGAAGA 120
consensus_7769#1      ACCAACAGCTACAAGATGATGACGATTTACTTGATTTGTTACATTACGCCAGTGGGAAGA 95
                      ************************************************************

consensus_7769#0      TGAATCGTTAATTATTGAATTTTGATTGCGTGGTGGACAACAACTGCACAGACAAGTATG 180
consensus_7769#1      TGAATCGTTAATTATTGAATTTTGATTGCGTGGTGGACAACAACTGCACAGACAAGTATG 155
                      ************************************************************

consensus_7769#0      AAATCTAGCTCTACCTCCAATTAAGAACGGTGAATCTAGCGCCTGTTCAGCAGTTAACCG 240
consensus_7769#1      AAATCTAGCTCTACCTCCAATTAAGAACGGTGAATCTAGCGCCTGTTCAGCAGTTAACCG 215
                      ************************************************************

consensus_7769#0      CTTCGATGAGCTAAAACTTAGAAGTCCTGTAAACAAATTAACTANATCAGGATCAGGTGG 300
consensus_7769#1      CTTCGATGAGCTAAAACTTAGA-GTCCTGTAA-CAAATTA-CTAAA-------------- 258
                      ********************** ********* ******* *** *              

consensus_7769#0      ATTTTCTGTAGATGACTGANAATATTGAGTATTAGCCGGAACGAGTATTCTTGAACAGCA 360
consensus_7769#1      ------------------------------------------------------------