cluster # 7772

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Schistosoma mansoni
cluster # 7772 cluster # 7772 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7772#0 length = 1237 sequences # 3

consensus_7772#1 length = 435 sequences # 1
consensus_7772#2 length = 173 sequences # 1

consensusID : consensus_7772#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1237
fasta sequence

                              [GGAACATTCAATCTATTTAACAAATCAATCATCATTATCAGATTCTGGACCATTTCCACGTGAACCAAGAATAGGACCTAAACTATGGAGATGTTGTCGATTTAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTATCTGCATCTATATTTATTGCTGGTGTTGGAATTTATGGTTCAACACAAGTTGGTGATATACGTACAGTTCATGTTGAATTAAAAACAGGCAATGGAAGTGCACCTCCACCATCATCATCATCAGCTAATGTACCATCAAACGGAAATCAATTATCAGATCGAATGTATCTTTCACAAGCCTCAAGAAGTACAAGTGATCTAACTAATTTGAATACATCTACACGTTTATTTCATAATCATAATAATCGTGGAGGATATTTAAATATTTGGGATATTACAGGATTATCAAGGCTAGATGAAGGTGATTCACCTAGTACTCCAATGAATTCGTCGAATCAATTCAATAAAAAATCATCAACAAAATGTCTTGCTAGTAAACAAATTTCATTAAGATCTGATGGAACTAATCGTGTCTATGATATAAGATTTGGATGTCCAGTAAAGTTGGTTAAAAACCGAAGATACTATTTAAGTTTGAGCACATCANATTCAGATCATAATCCAGCATCAATGTCTACATCTTCAACAGC-ATT-ATTCATC-ACATCATATATTGGTTTCTATGGTGGAACAGAAATTCTAATTCATTGTCCATCAGAAGAAACATTGAATAAACAAGATAGCGAAACAATAACAAGCAGCAACAAGAAATCCTCATCATCAACATCATCTAACACTAGAAAGAAACGATCAGTAACAAACAAACTAGGTTTTGTAACCAACCACAATGATAACTCACATTTATTAGGTAATAGTAATGAAACAGTCATATTTAATTTTCATGATAGTTGGGATGGTCTAGAAAATGGGAGTGTGGATAGAGGATTAATACCGGATTTATTATTTTATACTTGTTTTTAAAACTTTTTTCATTATCATCATTCATGTACACATTACTCTTTATGGTTCCTTTCATATTTGTTACATATATATATGGGCAACATAGTTACAAAATGATGTTTACAAAGACAAAGTCTACATATACATTACTTTCATCATCATCCCCTTATCCATTCATTACTATATTATCATCCATATTCATATATTATACAATACAACTATGGT]

[+] EMBL CD082106             [GGAACATTCAATCTATTTAACAAATCAATCATCATTATCAGATTCTGGACCATTTCCACGTGAACCAAGAATAGGACCTAAACTATGGAGATGTTGTCGATTTAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTATCTGCATCTATATTTATTGCTGGTGTTGGAATTTATGGTTCAACACAAGTTGGTGATATACGTACAGTTCATGTTGAATTAAAAACAGGCAATGGAAGTGCACCTCCACCATCATCATCATCAGCTAATGTACCATCAAACGGAAATCAATTATCAGATCGAATGTATCTTTCACAAGCCTCAAGAAGTACAAGTGATCTAACTAATTTGAATACATCTACACGTTTATTTCATAATCATAATAATCGTGGAGGATATTTAAATATTTGGGATATTACAGGATTATCAAGGCTAGATGAAGGTGATTCACCTAGTACTCCAATGAATTCGTCGAATCAATTCAATAAAAAATCATCAACAAAATGTCTTGCTAGTAAACAAATTTCATTAAGATCTGATGGAACTAATCGTGTCTATGATATAAGATTTGGATGTCCAGTAAAGTTGGTTAAAAACCGAAGATACTATTTAAGTTTGAGCACATCANATTCAGATCATAATCCAGCATCAATGTCTACATCTTCAACAGC ATT ATTCATC ACATCATATATTGGTTTCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD110843             [                                                                          GACCTAAACTATGGAGATGTTGTCGATTTAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTATCTGCATCTATATTTATTGCTGGTGTTGGAATTTATGGTTCAACACAAGTTGGTGATATACGTACAGTTCATGTTGAATTAAAAACAGGCAATGGAAGTGCACCTCCACCATCATCATCATCAGCTAATGTACCATCAAACGGAAATCAATTATCAGATCGAATGAATCTTTCACAAGCCTCAAGAAGTACAAGTGATCTAACTAATTTGAATACATCTACACGTTTATTTCATAATCATAATAATCGTGGAGGATATTTAAATATTTGGGATATTACAGGATTATCAAGGCTAGATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD075721             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAACCGAAGATACTATTTAAGTTTGAGCACATCAAATTCAGATCATAATCCAGCATCAATGTTTACATCTTCAACAGCAATTAATTCATCAACATCATATATTGGTTTCTATGGTGGAACAGAAATTCTAATTCATTGTCCATCAGAAGAAACATTGAATAAACAAGATAGCGAAACAATAACAAGCAGCAACAAGAAATCCTCATCATCAACATCATCTAACACTAGAAAGAAACGATCAGTAACAAACAAACTAGGTTTTGTAACCAACCACAATGATAACTCACATTTATTAGGTAATAGTAATGAAACAGTCATATTTAATTTTCATGATAGTTGGGATGGTCTAGAAAATGGGAGTGTGGATAGAGGATTAATACCGGATTTATTATTTTATACTTGTTTTTAAAACTTTTTTCATTATCATCATTCATGTACACATTACTCTTTATGGTTCCTTTCATATTTGTTACATATATATATGGGCAACATAGTTACAAAATGATGTTTACAAAGACAAAGTCTACATATACATTACTTTCATCATCATCCCCTTATCCATTCATTACTATATTATCATCCATATTCATATATTATACAATACAACTATGGT]




>consensus_7772#0
GGAACATTCAATCTATTTAACAAATCAATCATCATTATCAGATTCTGGACCATTTCCACG
TGAACCAAGAATAGGACCTAAACTATGGAGATGTTGTCGATTTAAACGTATTCGTAAAGA
TTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTATCTGC
ATCTATATTTATTGCTGGTGTTGGAATTTATGGTTCAACACAAGTTGGTGATATACGTAC
AGTTCATGTTGAATTAAAAACAGGCAATGGAAGTGCACCTCCACCATCATCATCATCAGC
TAATGTACCATCAAACGGAAATCAATTATCAGATCGAATGTATCTTTCACAAGCCTCAAG
AAGTACAAGTGATCTAACTAATTTGAATACATCTACACGTTTATTTCATAATCATAATAA
TCGTGGAGGATATTTAAATATTTGGGATATTACAGGATTATCAAGGCTAGATGAAGGTGA
TTCACCTAGTACTCCAATGAATTCGTCGAATCAATTCAATAAAAAATCATCAACAAAATG
TCTTGCTAGTAAACAAATTTCATTAAGATCTGATGGAACTAATCGTGTCTATGATATAAG
ATTTGGATGTCCAGTAAAGTTGGTTAAAAACCGAAGATACTATTTAAGTTTGAGCACATC
ANATTCAGATCATAATCCAGCATCAATGTCTACATCTTCAACAGCATTATTCATCACATC
ATATATTGGTTTCTATGGTGGAACAGAAATTCTAATTCATTGTCCATCAGAAGAAACATT
GAATAAACAAGATAGCGAAACAATAACAAGCAGCAACAAGAAATCCTCATCATCAACATC
ATCTAACACTAGAAAGAAACGATCAGTAACAAACAAACTAGGTTTTGTAACCAACCACAA
TGATAACTCACATTTATTAGGTAATAGTAATGAAACAGTCATATTTAATTTTCATGATAG
TTGGGATGGTCTAGAAAATGGGAGTGTGGATAGAGGATTAATACCGGATTTATTATTTTA
TACTTGTTTTTAAAACTTTTTTCATTATCATCATTCATGTACACATTACTCTTTATGGTT
CCTTTCATATTTGTTACATATATATATGGGCAACATAGTTACAAAATGATGTTTACAAAG
ACAAAGTCTACATATACATTACTTTCATCATCATCCCCTTATCCATTCATTACTATATTA
TCATCCATATTCATATATTATACAATACAACTATGGT

consensusID : consensus_7772#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [ATATGCAATTAAAAAAAAAGATCATTCTAATGGATTCACAGGCAATGATTCAACAACATTATCCAATCCATCACCTATATGTAATTCAATCTATTTAACAAATCAATCATCATTACCAGATTCTGGACCATTTCCACGTGAACCAAGAATAGGACCTAAACTATGGAGATGTTGTCGATTTAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTAAGGTTTCATTCTTTCTTAGTTATATCTAAGCGTAACAGTAATTTATATTCTCCCTTTCAACTGGATAGTAATGCATTAACCTTTTAATGGCTTGAATGAAGTAATCATCTGATTATCAGATGTATTTCACGTGTTAGATTAATGAATAAACTAAGAAGAAGAAGAAGGAGATGAAAACTGTA]

[-] EMBL CD148484             [ATATGCAATTAAAAAAAAAGATCATTCTAATGGATTCACAGGCAATGATTCAACAACATTATCCAATCCATCACCTATATGTAATTCAATCTATTTAACAAATCAATCATCATTACCAGATTCTGGACCATTTCCACGTGAACCAAGAATAGGACCTAAACTATGGAGATGTTGTCGATTTAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTAAGGTTTCATTCTTTCTTAGTTATATCTAAGCGTAACAGTAATTTATATTCTCCCTTTCAACTGGATAGTAATGCATTAACCTTTTAATGGCTTGAATGAAGTAATCATCTGATTATCAGATGTATTTCACGTGTTAGATTAATGAATAAACTAAGAAGAAGAAGAAGGAGATGAAAACTGTA]




>consensus_7772#1
ATATGCAATTAAAAAAAAAGATCATTCTAATGGATTCACAGGCAATGATTCAACAACATT
ATCCAATCCATCACCTATATGTAATTCAATCTATTTAACAAATCAATCATCATTACCAGA
TTCTGGACCATTTCCACGTGAACCAAGAATAGGACCTAAACTATGGAGATGTTGTCGATT
TAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAAT
TAGTTTTTCGGTAAGGTTTCATTCTTTCTTAGTTATATCTAAGCGTAACAGTAATTTATA
TTCTCCCTTTCAACTGGATAGTAATGCATTAACCTTTTAATGGCTTGAATGAAGTAATCA
TCTGATTATCAGATGTATTTCACGTGTTAGATTAATGAATAAACTAAGAAGAAGAAGAAG
GAGATGAAAACTGTA

consensusID : consensus_7772#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 173
fasta sequence

                              [CTCGCGGCCAAGATTCGGCACGAGGCGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTATCTGCATCTATATTTANTTGCTGGTGTTGGATTTATGGTTCAACACAAGTTGGTGATATACGTACAGTTCATGTTGAAT]

[+] EMBL CD078196             [CTCGCGGCCAAGATTCGGCACGAGGCGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTATCTGCATCTATATTTANTTGCTGGTGTTGGATTTATGGTTCAACACAAGTTGGTGATATACGTACAGTTCATGTTGAAT]




>consensus_7772#2
CTCGCGGCCAAGATTCGGCACGAGGCGTATTCGTAAAGATTTATTATCATTAACTGCTTC
TAATAATCATCGGCATACAATTAGTTTTTCGGTATCTGCATCTATATTTANTTGCTGGTG
TTGGATTTATGGTTCAACACAAGTTGGTGATATACGTACAGTTCATGTTGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7772#0      ------------------------------------------------------------
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ATATGCAATTAAAAAAAAAGATCATTCTAATGGATTCACAGGCAATGATTCAACAACATT 60
                                                                                  

consensus_7772#0      ------------------GGAACATTCAATCTATTTAACAAATCAATCATCATTATCAGA 42
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ATCCAATCCATCACCTATATGTAATTCAATCTATTTAACAAATCAATCATCATTACCAGA 120
                                                                                  

consensus_7772#0      TTCTGGACCATTTCCACGTGAACCAAGAATAGGACCTAAACTATGGAGATGTTGTCGATT 102
consensus_7772#2      ---------------------------------------CTCGCGGCCAAGATTCGGCAC 21
consensus_7772#1      TTCTGGACCATTTCCACGTGAACCAAGAATAGGACCTAAACTATGGAGATGTTGTCGATT 180
                                                                  **  * * *   *   

consensus_7772#0      TAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAAT 162
consensus_7772#2      GAGGCGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAAT 81
consensus_7772#1      TAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAAT 240
                       *  ********************************************************

consensus_7772#0      TAGTTTTTCGGTAT--CTGCATCTATATTTATT-GC---------TGGTGTTGGAATTTA 210
consensus_7772#2      TAGTTTTTCGGTAT--CTGCATCTATATTTANTTGC---------TGGTGTTGGA-TTTA 129
consensus_7772#1      TAGTTTTTCGGTAAGGTTTCATTCTTTCTTAGTTATATCTAAGCGTAACAGTAATTTATA 300
                      *************    * ***   *  *** *            *     *    * **

consensus_7772#0      TGGTTCAACACAAGTTGGTGATA-TACGTACAGTTCATGTTGAATTAAAAACAGGCAATG 269
consensus_7772#2      TGGTTCAACACAAGTTGGTGATA-TACGTACAGTTCATGTTGAAT--------------- 173
consensus_7772#1      TTCTCCCTTTCAACTGGATAGTAATGCATTAACCTTTTAATGGCTTGAATGAAGTAATCA 360
                      *  * *    *** * * *  ** * * *  *  *  *  **  *               

consensus_7772#0      GAAGTGCACCTCCACCATCATCATCATCAGCTAATGTACCATCAAACGGAAATCAATTAT 329
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      TCTGATTATCAGATGTATTTCACGTGTTAGATTAATGAATAAACTAAGAAGAAGAAGAAG 420
                                                                                  

consensus_7772#0      CAGATCGAATGTATCTTTCACAAGCCTCAAGAAGTACAAGTGATCTAACTAATTTGAATA 389
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      GAGATGAAAACTGTA--------------------------------------------- 435
                                                                                  

consensus_7772#0      CATCTACACGTTTATTTCATAATCATAATAATCGTGGAGGATATTTAAATATTTGGGATA 449
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      TTACAGGATTATCAAGGCTAGATGAAGGTGATTCACCTAGTACTCCAATGAATTCGTCGA 509
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      ATCAATTCAATAAAAAATCATCAACAAAATGTCTTGCTAGTAAACAAATTTCATTAAGAT 569
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      CTGATGGAACTAATCGTGTCTATGATATAAGATTTGGATGTCCAGTAAAGTTGGTTAAAA 629
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      ACCGAAGATACTATTTAAGTTTGAGCACATCANATTCAGATCATAATCCAGCATCAATGT 689
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      CTACATCTTCAACAGCATTATTCATCACATCATATATTGGTTTCTATGGTGGAACAGAAA 749
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      TTCTAATTCATTGTCCATCAGAAGAAACATTGAATAAACAAGATAGCGAAACAATAACAA 809
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      GCAGCAACAAGAAATCCTCATCATCAACATCATCTAACACTAGAAAGAAACGATCAGTAA 869
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      CAAACAAACTAGGTTTTGTAACCAACCACAATGATAACTCACATTTATTAGGTAATAGTA 929
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      ATGAAACAGTCATATTTAATTTTCATGATAGTTGGGATGGTCTAGAAAATGGGAGTGTGG 989
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      ATAGAGGATTAATACCGGATTTATTATTTTATACTTGTTTTTAAAACTTTTTTCATTATC 1049
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      ATCATTCATGTACACATTACTCTTTATGGTTCCTTTCATATTTGTTACATATATATATGG 1109
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      GCAACATAGTTACAAAATGATGTTTACAAAGACAAAGTCTACATATACATTACTTTCATC 1169
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      ATCATCCCCTTATCCATTCATTACTATATTATCATCCATATTCATATATTATACAATACA 1229
consensus_7772#2      ------------------------------------------------------------
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      ACTATGGT 1237
consensus_7772#2      --------
consensus_7772#1      --------