cluster # 7785

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Schistosoma mansoni
cluster # 7785 cluster # 7785 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7785#0 length = 646 sequences # 3

consensus_7785#1 length = 492 sequences # 1
consensus_7785#2 length = 306 sequences # 1

consensusID : consensus_7785#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 646
fasta sequence

                              [GTCGCATCAGAATATAATACTGACTTAAGGTCTCGACAGTTACGGCCCCTGCAGATGAACACGTAGTCATGCATTCAGGTTGCCATAAAATAGGAGGGCGTCTGTTTTCAGCGTAGGCCACTGACTTTGCAGCCTCTAAGGAAGATTTGACTGCACCACTGAATGTAGCACTAAAAAGCAACGTTTGACGACGTTTCGGAAGTGCTTTTAATATAGTGTTCAGATCTTCGCCAAAATTATCTTCCAACAATCTATCTGCTTCGTCTAGAACCACCACTTTCGTTCTGGATAAGGTCCATTCTGGCTTATTCTCAGTATCAGCTTCTTGTGCGGCTGTCTGGGTGCGCAGAAGATCAGCCAACCGTCCAGGAGTAGAAACGACAATATGTGGAGATCGAGCTAAGTCAATACTCTGATGAACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGGATTAAATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGCTGTTTTTCCAGAACCAGTTTTTGCACATGTTGGTGATAACTGGGG]

[+] EMBL CD190322             [GTCGCATCAGAATATAATACTGACTTAAGGTCTCGACAGTTACGGCCCCTGCAGATGAACACGTAGTCATGCATTCAGGTTGCCATAAAATAGGAGGGCGTCTGTTTTCAGCGTAGGCCACTGACTTTGCAGCCTCTAAGGAAGATTTGACTGCACCACTGAATGTAGCACTAAAAAGCAACGTTTGACGACGTTTCGGAAGTGCTTTTAATATAGTGTTCAGATCTTCGCCAAAATTATCTTCCAACAATCTATCTGCTTCGTCTAGAACCACCACTTTCGTTCTGGATAAGGTCCATTCTGGCTTATTCTCAGTATCAGCTTCTTGTGCGGCTGTCTGGGTGCGCAGAAGATCAGCCAACCGTCCAGGAGTAGAAACGACAATATGTGGAGATCGAGCTAAGTCAATACTCTGATGAACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGGATTAAATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGCTGTTTTTCCAGAACCAGTTTTTGCACATGTTGGTGATAACTGGGG]
[-] EMBL CD190532             [GTCGCATCAGAATATAATACTGACTTAAGGTCTCGACAGTTACGGCCCCTGCAGATGAACACGTAGTCATGCATTCAGGTTGCCATAAAATAGGAGGGCGTCTGTTTTCAGCGTAGGCCACTGACTTTGCAGCCTCTAAGGAAGATTTGACTGCACCTCTGAATGTAGCACTAAAAAGCAACGTTAGACGACGTTTCGGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD147601             [                                                                                                                                 CAGCCTCTAAGGAAGATTTGACTGCACCACTGAATGTAGCACTAAAAAGCAACGTTTGACGACGTTTCGGAAGTGCTTTTAATATAGTGTTCAGATCTTCGCCAAAATTATCTTCCAACAATCTATCTGCTTCGTCTAGAACCACCACTTTCGTTCTGGATA                                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_7785#0
GTCGCATCAGAATATAATACTGACTTAAGGTCTCGACAGTTACGGCCCCTGCAGATGAAC
ACGTAGTCATGCATTCAGGTTGCCATAAAATAGGAGGGCGTCTGTTTTCAGCGTAGGCCA
CTGACTTTGCAGCCTCTAAGGAAGATTTGACTGCACCACTGAATGTAGCACTAAAAAGCA
ACGTTTGACGACGTTTCGGAAGTGCTTTTAATATAGTGTTCAGATCTTCGCCAAAATTAT
CTTCCAACAATCTATCTGCTTCGTCTAGAACCACCACTTTCGTTCTGGATAAGGTCCATT
CTGGCTTATTCTCAGTATCAGCTTCTTGTGCGGCTGTCTGGGTGCGCAGAAGATCAGCCA
ACCGTCCAGGAGTAGAAACGACAATATGTGGAGATCGAGCTAAGTCAATACTCTGATGAA
CTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGGATTAAAT
TTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTA
GAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTG
CTGTTTTTCCAGAACCAGTTTTTGCACATGTTGGTGATAACTGGGG

consensusID : consensus_7785#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [AAGTCAATACTCTGATGAACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGGATTAAATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGCTGTTTTTCCAGAACCAGTTTTGGCACATGCTACTACATCATTTCCTTCCAAAATCACTGGAATGCAGCCTTCTTGAACTTCCGTAGGTTTATTAATCCCTTTATCTCTTAGCAACTCAACAATTTCAGGACATGCACCAAGTTCTTCAAAAGTCATTTAGATCCGAATATCTTGTACTGCACTGGTTAATGTAGATATCAATTCTAAGTATCAGGTTTATTTAATAATGAGAATAGACGACAATCTTGTGGTAAGAACATTACACGTTGTAGCGTCACTTCTGACCTCGTGC]

[-] EMBL CD083389             [AAGTCAATACTCTGATGAACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGGATTAAATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGCTGTTTTTCCAGAACCAGTTTTGGCACATGCTACTACATCATTTCCTTCCAAAATCACTGGAATGCAGCCTTCTTGAACTTCCGTAGGTTTATTAATCCCTTTATCTCTTAGCAACTCAACAATTTCAGGACATGCACCAAGTTCTTCAAAAGTCATTTAGATCCGAATATCTTGTACTGCACTGGTTAATGTAGATATCAATTCTAAGTATCAGGTTTATTTAATAATGAGAATAGACGACAATCTTGTGGTAAGAACATTACACGTTGTAGCGTCACTTCTGACCTCGTGC]




>consensus_7785#1
AAGTCAATACTCTGATGAACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGT
GGTTCACCTTGGATTAAATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCC
CTTGTTGGAGTAATTATTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGT
ATGGGGATCAAAAATGCTGCTGTTTTTCCAGAACCAGTTTTGGCACATGCTACTACATCA
TTTCCTTCCAAAATCACTGGAATGCAGCCTTCTTGAACTTCCGTAGGTTTATTAATCCCT
TTATCTCTTAGCAACTCAACAATTTCAGGACATGCACCAAGTTCTTCAAAAGTCATTTAG
ATCCGAATATCTTGTACTGCACTGGTTAATGTAGATATCAATTCTAAGTATCAGGTTTAT
TTAATAATGAGAATAGACGACAATCTTGTGGTAAGAACATTACACGTTGTAGCGTCACTT
CTGACCTCGTGC

consensusID : consensus_7785#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence

                              [AGGAGTAGAAACGACAATATGTGGAGATCGAGCTAAGTCAATACTCTGATGAACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGGATTAAATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGCTGTTTTTCCAGAACCAGTTTTGGCACATGCTACTACATCATTTCCTAAAACTGCATTAAAAAGTTACAAAAA]

[+] EMBL CD195435             [AGGAGTAGAAACGACAATATGTGGAGATCGAGCTAAGTCAATACTCTGATGAACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGGATTAAATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGCTGTTTTTCCAGAACCAGTTTTGGCACATGCTACTACATCATTTCCTAAAACTGCATTAAAAAGTTACAAAAA]




>consensus_7785#2
AGGAGTAGAAACGACAATATGTGGAGATCGAGCTAAGTCAATACTCTGATGAACTATGCT
TCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGGATTAAATTTAACCC
AGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATA
TAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGCTGTTTT
TCCAGAACCAGTTTTGGCACATGCTACTACATCATTTCCTAAAACTGCATTAAAAAGTTA
CAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7785#0      GTCGCATCAGAATATAATACTGACTTAAGGTCTCGACAGTTACGGCCCCTGCAGATGAAC 60
consensus_7785#2      ------------------------------------------------------------
consensus_7785#1      ---------------------------AAGTCAATACTCTGATGAACTATGCTTCTTC-C 32
                                                                                  

consensus_7785#0      ACGTAGTCATGCATTCAGGTTGCCATAAAATAGGAGGGCGTCTGTTTTCAGCGTAGGCCA 120
consensus_7785#2      ------------------------------------------------------------
consensus_7785#1      AC-CAGTTAT-CAC-CAACACGTTACATAGTGGTTCACC--TTGGATTAAATTTAACCCA 87
                                                                                  

consensus_7785#0      CTGACTTTGCAGCCTCTAAGGAAGATTTGACTGCACCACTGAATGTAGCACTAAA--AAG 178
consensus_7785#2      ------------------------------------------------------------
consensus_7785#1      GCGGCTT-GTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATA 146
                                                                                  

consensus_7785#0      CAACGTTTGACGACGTTTCGGAAGTGCTTTTAATATAGTGTTCAGATCTTCGCCAAAATT 238
consensus_7785#2      ------------------------------------------------------------
consensus_7785#1      TAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGC-----T 201
                                                                                  

consensus_7785#0      ATCTTCCAACAATCTATCTGCTTCGTCTAGAACCACCACTTTCGTTCTGGATAAGGTCCA 298
consensus_7785#2      ------------------------------------------------------------
consensus_7785#1      GTTTTTCCAGAACCA----GTTTTGGCACATGCTACTACATCATTTCCTTCCAAAATC-- 255
                                                                                  

consensus_7785#0      TTCTGGCTTATTCTCAGTATCAGCTTCTTGTGCGGCTGTCTGGGTGCGCAGAAGATCAGC 358
consensus_7785#2      ------------------------------------------------------------
consensus_7785#1      -ACTGG---------AATGCAGCCTTCTTGAACTTCCG--TAGGTTTAT------TAATC 297
                                                                                  

consensus_7785#0      CAACCGTCCAGGAGTAGAAACGACAATATGTGGAGATCGAGCTAAGTCAATACTCTGATG 418
consensus_7785#2      ---------AGGAGTAGAAACGACAATATGTGGAGATCGAGCTAAGTCAATACTCTGATG 51
consensus_7785#1      CCTTTATCTCTTAGCA-ACTCAACAATTTCAGGACAT-GCACCAAGTT-----CTTCAAA 350
                                  ** * *  * ***** *  *** ** *  * ****        * *  

consensus_7785#0      AACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGG-ATTA 477
consensus_7785#2      AACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGG-ATTA 110
consensus_7785#1      AGTCAT----------TTAGATCCGAATATCTTGTACTGCACTGGTTAATGTAGATATCA 400
                      *   **            ** *   *  * *  **     * ***** *  * *  ** *

consensus_7785#0      AATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTA 537
consensus_7785#2      AATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTA 170
consensus_7785#1      ATTCTAAGTATCAGGTTTATTTAATAATGAGAATAGACGACAATCTTGTGGTAAGAAC-A 459
                      * * ***      ** ** **    ***  **   * * **   ***** * *  **  *

consensus_7785#0      TTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATG 597
consensus_7785#2      TTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATG 230
consensus_7785#1      TTA---CACGTTGTAGCGTCACTTCTGACCTC-GTGC----------------------- 492
                      ***   **  *  * *  * * *** * * *  ***                        

consensus_7785#0      CTGCTGTTTTTCCAGAACCAGTTTTTGCACATGTTGGTG-ATAACTGGGG---------- 646
consensus_7785#2      CTGCTGTTTTTCCAGAACCAGTTTTGGCACATGCTACTACATCATTTCCTAAAACTGCAT 290
consensus_7785#1      ------------------------------------------------------------
                                                                                  

consensus_7785#0      ----------------
consensus_7785#2      TAAAAAGTTACAAAAA 306
consensus_7785#1      ----------------