cluster # 780

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Schistosoma mansoni
cluster # 780 cluster # 780 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_780#0 length = 500 sequences # 1

consensus_780#1 length = 316 sequences # 1

consensusID : consensus_780#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 500
fasta sequence

                              [AGAGCCGGGAAATAGAAGCAGATATGAAAAGGATGAATGTTAACTGGAAAGAACTGGAAAGGATTGCCCAGGACAGGGTTGGATGGAGAATGCTGGTGGGCGGCCTATGCTCCTTCACGAGGGGTAACGGGTGTAAGTGGATAAATCCGTAAGAAACTATCAGAGCACGTTTGCTAAAAATTACTGGTAAAAAAGTCAAAACTTACAGGGACAAAATCTAAAGTGAATATGTCTATCATACCCAAAACTTTTAATTTAATACTATAAAATAAGATAAAATTGAGGTATGATTAGAATATCAACTTTAGAGTACTATTATTTTTTACGAGCACTGGAGTATACACAAACAAAATAATTCAATTTACCAAAAACAATGAACAGACGATTTTTCTTAAATATTGAATTCATACGGTGAGACTATTAATTTATCAATGTTTGAAAGAAAAAAAAGGTTAACGAACCAGTTTCTTTTGTAGTTCTTCTAACTGTTCAATTGCCCT]

[+] EMBL CD146804             [AGAGCCGGGAAATAGAAGCAGATATGAAAAGGATGAATGTTAACTGGAAAGAACTGGAAAGGATTGCCCAGGACAGGGTTGGATGGAGAATGCTGGTGGGCGGCCTATGCTCCTTCACGAGGGGTAACGGGTGTAAGTGGATAAATCCGTAAGAAACTATCAGAGCACGTTTGCTAAAAATTACTGGTAAAAAAGTCAAAACTTACAGGGACAAAATCTAAAGTGAATATGTCTATCATACCCAAAACTTTTAATTTAATACTATAAAATAAGATAAAATTGAGGTATGATTAGAATATCAACTTTAGAGTACTATTATTTTTTACGAGCACTGGAGTATACACAAACAAAATAATTCAATTTACCAAAAACAATGAACAGACGATTTTTCTTAAATATTGAATTCATACGGTGAGACTATTAATTTATCAATGTTTGAAAGAAAAAAAAGGTTAACGAACCAGTTTCTTTTGTAGTTCTTCTAACTGTTCAATTGCCCT]




>consensus_780#0
AGAGCCGGGAAATAGAAGCAGATATGAAAAGGATGAATGTTAACTGGAAAGAACTGGAAA
GGATTGCCCAGGACAGGGTTGGATGGAGAATGCTGGTGGGCGGCCTATGCTCCTTCACGA
GGGGTAACGGGTGTAAGTGGATAAATCCGTAAGAAACTATCAGAGCACGTTTGCTAAAAA
TTACTGGTAAAAAAGTCAAAACTTACAGGGACAAAATCTAAAGTGAATATGTCTATCATA
CCCAAAACTTTTAATTTAATACTATAAAATAAGATAAAATTGAGGTATGATTAGAATATC
AACTTTAGAGTACTATTATTTTTTACGAGCACTGGAGTATACACAAACAAAATAATTCAA
TTTACCAAAAACAATGAACAGACGATTTTTCTTAAATATTGAATTCATACGGTGAGACTA
TTAATTTATCAATGTTTGAAAGAAAAAAAAGGTTAACGAACCAGTTTCTTTTGTAGTTCT
TCTAACTGTTCAATTGCCCT

consensusID : consensus_780#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 316
fasta sequence

                              [ATGGCCTTTTCGTTCTATTGTGGTACTCCTCAGCAGGGACCATACACCATCCCGCTTCTTGAGATTCGAACCAAGGATAAATGTTTGTGAATATGTGATACATCTATATCTCGATGTATCATAGGTACGTAATATCTGACCACTTTTTTCCCGTCCATATAATGAGTGAGGACATACATTAAGGAAATCACTAATGTACTTTACAAGGCAATCCTTAATTTGGAATCCGGAAGGGAAGCGGAAAAGAGGAAGGACACACTACTCCAGGAAATAGAATTAGATATGAAAAGGATGAATGTTAACTGAGAAAAACTGG]

[+] EMBL CD188619             [ATGGCCTTTTCGTTCTATTGTGGTACTCCTCAGCAGGGACCATACACCATCCCGCTTCTTGAGATTCGAACCAAGGATAAATGTTTGTGAATATGTGATACATCTATATCTCGATGTATCATAGGTACGTAATATCTGACCACTTTTTTCCCGTCCATATAATGAGTGAGGACATACATTAAGGAAATCACTAATGTACTTTACAAGGCAATCCTTAATTTGGAATCCGGAAGGGAAGCGGAAAAGAGGAAGGACACACTACTCCAGGAAATAGAATTAGATATGAAAAGGATGAATGTTAACTGAGAAAAACTGG]




>consensus_780#1
ATGGCCTTTTCGTTCTATTGTGGTACTCCTCAGCAGGGACCATACACCATCCCGCTTCTT
GAGATTCGAACCAAGGATAAATGTTTGTGAATATGTGATACATCTATATCTCGATGTATC
ATAGGTACGTAATATCTGACCACTTTTTTCCCGTCCATATAATGAGTGAGGACATACATT
AAGGAAATCACTAATGTACTTTACAAGGCAATCCTTAATTTGGAATCCGGAAGGGAAGCG
GAAAAGAGGAAGGACACACTACTCCAGGAAATAGAATTAGATATGAAAAGGATGAATGTT
AACTGAGAAAAACTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_780#0      AGAGCCGGGAAATAGAAGCAGATATGAAAAGGATGAATGTTAACTGGAAAGAACTGGAAA 60
consensus_780#1      -----------------------ATGGCCTTT-TCGTTCTATTGTGGTACTCCTCAGCAG 36
                                            ***       *   * *    *** *       * * 

consensus_780#0      GGATTGCCCAGGACAGGGTTGGATGGAGAATGCTGGTGGGCGGCCTATGCTCCTTCACGA 120
consensus_780#1      GGACCATACACCATCCCGCTTCTTGAG--ATTCGAACCAAGGATAAATGTTTGTGAATAT 94
                     ***     **  *    * *   **    ** *        *    *** *  *  *   

consensus_780#0      GGGGTAACGGGTGTAAGTGGATAAATCC---GTAAGAAACTATCAGAGCACGTTTGCTAA 177
consensus_780#1      GTGATA-CATCTATATCTCGATGTATCATAGGTACGTAA-TATCTGACCACTTTTTTC-- 150
                     * * ** *   * **  * ***  ***    *** * ** **** ** *** ***     

consensus_780#0      AAATTACTGGTAAAA-AAGTCAAAACTTACAGGGACAAAATCTAAAGTGAATATGTCTAT 236
consensus_780#1      ---CCGTCCATATAATGAGTGAGGACATACATTAAGGAAATC----ACTAATGTACTTTA 203
                               ** **  *** *  ** ****   *  *****       *** *   *  

consensus_780#0      CATACCCAAAACTTTTAATTTAATACTATAAAATAAGATAAAATTGAGGTATGATTAGAA 296
consensus_780#1      CAAGGC---AATCCTTAATTTGGAATCCGGAAGGGAAGCGGAAAAGAGGAAGGAC-ACAC 259
                     **   *   **   *******   *     **   *     **  **** * **  * * 

consensus_780#0      TATCAACTTTAGAGTACTATTATTTTTTACGAGCACTGGAGTATACACAAACAAAATAAT 356
consensus_780#1      TACT--CCAGGAAATAGAATTAGATATGAAAAGGATGAATGTTAACTGAGAAAAACTGG- 316
                     **    *     * **  ****  * * *  ** *     **  **  * * *** *   

consensus_780#0      TCAATTTACCAAAAACAATGAACAGACGATTTTTCTTAAATATTGAATTCATACGGTGAG 416
consensus_780#1      ------------------------------------------------------------
                                                                                 

consensus_780#0      ACTATTAATTTATCAATGTTTGAAAGAAAAAAAAGGTTAACGAACCAGTTTCTTTTGTAG 476
consensus_780#1      ------------------------------------------------------------
                                                                                 

consensus_780#0      TTCTTCTAACTGTTCAATTGCCCT 500
consensus_780#1      ------------------------