cluster # 7801

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Schistosoma mansoni
cluster # 7801 cluster # 7801 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7801#0 length = 665 sequences # 2
consensus_7801#1 length = 551 sequences # 1

consensus_7801#2 length = 439 sequences # 1
consensus_7801#3 length = 224 sequences # 1

consensusID : consensus_7801#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 665
fasta sequence

                              [ATGCGTGGTGGAGCTGTTGCACAAGATGGTCGAATAGAACCTGGAGATATGATACTAGAAGTAAATAGAATCAGCTTCGAAGATATGAGTAATGATGAAGCTGTAAGAGTTTTACGTGAGGAAGTTCAAAAACCT-GGGTAA-TTCACGGTGTACTTACTATTTGTCCAGTTATATATTATTTATTCTTATTTTCTCACCAAACTTCTAAAAGTAAACTTCATTTCAAAAGAATCATAATAAGGCAAATACCACAACAATGAATGATCATCATAGTTTGCTTGTAGGAGTTCAAGTTTTTGCATCATAAACTGATATTTGGTGATTAACCACTTGCTAAGGAAATCATAGGTTATCCACTTTTTGTCAATACATGTTAATTTATATGTGATAACGATAACTACGAGTGCAATTTTTTCTAAATCATATTTTCGCATGACTTTCGCTTTTTTCTGATTGTAGAGACATGCTTTTGTTAGCCTATATATACGGAATTTTACCATTTTATCTGCCTAATCATCACGTTTTCCGGCATTCTCACCTTGTATTCCTTCGTAATCGTGGGTTATTGTTGAAGTATAGTGTATCAGTTGTCTTTCTATCGAATCCGCCATTGAACATATTCGTAGTAGAATAAGCTCTATTTTTTTCCAATTTTAACGATTACC]

[+] EMBL CD088363             [ATGCGTGGTGGAGCTGTTGCACAAGATGGTCGAATAGAACCTGGAGATATGATACTAGAAGTAAATAGAATCAGCTTCGAAGATATGAGTAATGATGAAGCTGTAAGAGTTTTACGTGAGGAAGTTCAAAAACCT GGGTAA TTCACGGTGTACTTACTATTTGTCCAGTTATATATTATTTATTCTTATTTTCTCACCAAACTTCTAAAAGTAAACTTCATTTCAAAAGAATCATAATAAGGCAAATACCACAACAATGAATGATCATCATAGTTTGCTTGTAGGAGTTCAAGTTTTTGCATCATAAACTGATATTTGGTGATTAACCACTTGCTAAGGAAATCATAGGTTATCCACTTTTTGTCAATACATGTTAATTTATATGTGATAACGATAACTACGAGTGCAATTTTTTCTAAATCATATTTTCGCATGACTTTCGCTTTTTTCTGATTGTAGAGACATGCTTTTGTTAGCCTATATATACGGAATTTTACCATTTTATCTGCCTAATCATCACGTTTTCCGGCATTCTCACCTTGTATTCCTTCGTAATCGTGGGTTATTGTTGAAGTATAGTGTATCAGTTGTCTTTCTATCGAATCCGCCATTGAACATATTCGTAGTAGAATAAGCTCTATTTTTTTCCAATTTTAACGATTAC ]
[-] EMBL CD088333             [                                                                                                                                   ACCTGGGGTAATTTCACGGTGTACTTACTATTTGTCCAGTTATATATTATTTATTCTTATTTTCTCACCAAACTTCTAAAAGTAAACTTCATTTCAAAAGAATCATAATAAGGCAAATACCACAACAATGAATGATCATCATAGTTTGCTTGTAGGAGTTCAAGTTTTTGCATCATAAACTGATATTTGGTGATTAACCACTTGCTAAGGAAATCATAGGTTATCCACTTTTTGTCAATACATGTTAATTTATATGTGATAACGATAACTACGAGTGCAATTTTTTCTAAATCATATTTTCGCATGACTTTCGCTTTTTTCTGATTGTAGAGACATGCTTTTGTTAGCCTATATATACGGAATTTTACCATTTTATCTGCCTAATCATCACGTTTTCCGGCATTCTCACCTTGTATTCCTTCGTAATCGTGGGTTATTGTTGAAGTATAGTGTATCAGTTGTCTTTCTATCGAATCCGCCATTGAACATATTCGTAGTAGAATAAGCTCTATTTTTTTCCAATTTTAACGATTACC]




>consensus_7801#0
ATGCGTGGTGGAGCTGTTGCACAAGATGGTCGAATAGAACCTGGAGATATGATACTAGAA
GTAAATAGAATCAGCTTCGAAGATATGAGTAATGATGAAGCTGTAAGAGTTTTACGTGAG
GAAGTTCAAAAACCTGGGTAATTCACGGTGTACTTACTATTTGTCCAGTTATATATTATT
TATTCTTATTTTCTCACCAAACTTCTAAAAGTAAACTTCATTTCAAAAGAATCATAATAA
GGCAAATACCACAACAATGAATGATCATCATAGTTTGCTTGTAGGAGTTCAAGTTTTTGC
ATCATAAACTGATATTTGGTGATTAACCACTTGCTAAGGAAATCATAGGTTATCCACTTT
TTGTCAATACATGTTAATTTATATGTGATAACGATAACTACGAGTGCAATTTTTTCTAAA
TCATATTTTCGCATGACTTTCGCTTTTTTCTGATTGTAGAGACATGCTTTTGTTAGCCTA
TATATACGGAATTTTACCATTTTATCTGCCTAATCATCACGTTTTCCGGCATTCTCACCT
TGTATTCCTTCGTAATCGTGGGTTATTGTTGAAGTATAGTGTATCAGTTGTCTTTCTATC
GAATCCGCCATTGAACATATTCGTAGTAGAATAAGCTCTATTTTTTTCCAATTTTAACGA
TTACC

consensusID : consensus_7801#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [TGATTGTGTCTATCTTCACTGGTACGTCTTATTGGAAGAATTCGTCTGTGTCTTCGTTGTCTTCTATGTCTTGGATATTTAGCCGAAGACATAGTTGTACCTGTTGCTGTTGAAAATCTGCTTGATTCGTCTTCTGAATCGAAAAAGCTTGTGGATTCCAGATCTGAACTCATCATAGATGAAGAAGTTTCATAATTTTGAATTCTTTGACCAAGTTTAGCCAAGCGCGAACCATGCTTGTAATTATGAAAATTTTTCAGAGGCGGAACCCGATCACCGCTATATACTGAGTCTGTTTCGACACAAGTATCACATTCCTCAAGACCATGCCCTGTTGTCCCAATGGCATGTTCTTGTTCGCTGGGGATTTCATTTTTTGAGACACGGTGTATATTGTCAGGAGCTTTGTTGAAGTTTGTAGAATTTTTATTTTGACCGNGAAGGTGATTCTCGCCTGTGCCGGNTGAATGGTTATCTGATTTTGTACTGCTATCTGCAGAAACCAGCCATGAAATAACTTTTCCATTTGAACATGGCAGTCTCGCATCATC]

[+] EMBL CD095763             [TGATTGTGTCTATCTTCACTGGTACGTCTTATTGGAAGAATTCGTCTGTGTCTTCGTTGTCTTCTATGTCTTGGATATTTAGCCGAAGACATAGTTGTACCTGTTGCTGTTGAAAATCTGCTTGATTCGTCTTCTGAATCGAAAAAGCTTGTGGATTCCAGATCTGAACTCATCATAGATGAAGAAGTTTCATAATTTTGAATTCTTTGACCAAGTTTAGCCAAGCGCGAACCATGCTTGTAATTATGAAAATTTTTCAGAGGCGGAACCCGATCACCGCTATATACTGAGTCTGTTTCGACACAAGTATCACATTCCTCAAGACCATGCCCTGTTGTCCCAATGGCATGTTCTTGTTCGCTGGGGATTTCATTTTTTGAGACACGGTGTATATTGTCAGGAGCTTTGTTGAAGTTTGTAGAATTTTTATTTTGACCGNGAAGGTGATTCTCGCCTGTGCCGGNTGAATGGTTATCTGATTTTGTACTGCTATCTGCAGAAACCAGCCATGAAATAACTTTTCCATTTGAACATGGCAGTCTCGCATCATC]




>consensus_7801#1
TGATTGTGTCTATCTTCACTGGTACGTCTTATTGGAAGAATTCGTCTGTGTCTTCGTTGT
CTTCTATGTCTTGGATATTTAGCCGAAGACATAGTTGTACCTGTTGCTGTTGAAAATCTG
CTTGATTCGTCTTCTGAATCGAAAAAGCTTGTGGATTCCAGATCTGAACTCATCATAGAT
GAAGAAGTTTCATAATTTTGAATTCTTTGACCAAGTTTAGCCAAGCGCGAACCATGCTTG
TAATTATGAAAATTTTTCAGAGGCGGAACCCGATCACCGCTATATACTGAGTCTGTTTCG
ACACAAGTATCACATTCCTCAAGACCATGCCCTGTTGTCCCAATGGCATGTTCTTGTTCG
CTGGGGATTTCATTTTTTGAGACACGGTGTATATTGTCAGGAGCTTTGTTGAAGTTTGTA
GAATTTTTATTTTGACCGNGAAGGTGATTCTCGCCTGTGCCGGNTGAATGGTTATCTGAT
TTTGTACTGCTATCTGCAGAAACCAGCCATGAAATAACTTTTCCATTTGAACATGGCAGT
CTCGCATCATC

consensusID : consensus_7801#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [GTCAAAATAAAAATTCTACAAACTTCAACAAAGCTCCTGACAATATACACAGTGTCTCAAAAAATGAAATCCCCAGCGAACAAGAACATGCCATTGGGACAACAGGGCATGGTCTTGAGGAATGTGATACTTGTGTCGAAACAGACTCAGTATATAGCGGTGATCGGGTTCCGCCTCTGAAAAATTTTCATAATTACAAGCATGGTTCGCGCTTGGCTAAACTTGGTCAAAGAATTCAAAATTATGAAACTTCTTCATCTATGATGAGTTCAGATCTGGAATCCACAAGCTTTTTCGATTCAGAAGACGAATCAAGCAGATTTTCAACAGCAACAGGTACAACTATGTCTTCGGCTAAATATCCAAGACATAGAAGACAACGAAGACACAGACGGATTCTTCCAATAAGACGTACCAGTGAAGATGCTACTTCTTTTAG]

[+] EMBL CD184476             [GTCAAAATAAAAATTCTACAAACTTCAACAAAGCTCCTGACAATATACACAGTGTCTCAAAAAATGAAATCCCCAGCGAACAAGAACATGCCATTGGGACAACAGGGCATGGTCTTGAGGAATGTGATACTTGTGTCGAAACAGACTCAGTATATAGCGGTGATCGGGTTCCGCCTCTGAAAAATTTTCATAATTACAAGCATGGTTCGCGCTTGGCTAAACTTGGTCAAAGAATTCAAAATTATGAAACTTCTTCATCTATGATGAGTTCAGATCTGGAATCCACAAGCTTTTTCGATTCAGAAGACGAATCAAGCAGATTTTCAACAGCAACAGGTACAACTATGTCTTCGGCTAAATATCCAAGACATAGAAGACAACGAAGACACAGACGGATTCTTCCAATAAGACGTACCAGTGAAGATGCTACTTCTTTTAG]




>consensus_7801#2
GTCAAAATAAAAATTCTACAAACTTCAACAAAGCTCCTGACAATATACACAGTGTCTCAA
AAAATGAAATCCCCAGCGAACAAGAACATGCCATTGGGACAACAGGGCATGGTCTTGAGG
AATGTGATACTTGTGTCGAAACAGACTCAGTATATAGCGGTGATCGGGTTCCGCCTCTGA
AAAATTTTCATAATTACAAGCATGGTTCGCGCTTGGCTAAACTTGGTCAAAGAATTCAAA
ATTATGAAACTTCTTCATCTATGATGAGTTCAGATCTGGAATCCACAAGCTTTTTCGATT
CAGAAGACGAATCAAGCAGATTTTCAACAGCAACAGGTACAACTATGTCTTCGGCTAAAT
ATCCAAGACATAGAAGACAACGAAGACACAGACGGATTCTTCCAATAAGACGTACCAGTG
AAGATGCTACTTCTTTTAG

consensusID : consensus_7801#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [ACAAGATGGTCGAGTAGAATCTGGAGATATGATACTAGAAGTAAATAGAATCAGCTTCGAAGATATGAGTAATGATGAAGCTGTAAGAGTTTTACGTGAGGAAGTTCAAAAACCTGGTCCTATCACTTTAGTGGTTGCAATAATTACAAGCATGGTTCGCGCTTGGCTAAACTTGGTCAAAGAATTCAAAATTATGAAACTTCTTCATCTATGATGAGTTCAGA]

[-] EMBL CD072668             [ACAAGATGGTCGAGTAGAATCTGGAGATATGATACTAGAAGTAAATAGAATCAGCTTCGAAGATATGAGTAATGATGAAGCTGTAAGAGTTTTACGTGAGGAAGTTCAAAAACCTGGTCCTATCACTTTAGTGGTTGCAATAATTACAAGCATGGTTCGCGCTTGGCTAAACTTGGTCAAAGAATTCAAAATTATGAAACTTCTTCATCTATGATGAGTTCAGA]




>consensus_7801#3
ACAAGATGGTCGAGTAGAATCTGGAGATATGATACTAGAAGTAAATAGAATCAGCTTCGA
AGATATGAGTAATGATGAAGCTGTAAGAGTTTTACGTGAGGAAGTTCAAAAACCTGGTCC
TATCACTTTAGTGGTTGCAATAATTACAAGCATGGTTCGCGCTTGGCTAAACTTGGTCAA
AGAATTCAAAATTATGAAACTTCTTCATCTATGATGAGTTCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7801#0      ------------------------------------------------------------
consensus_7801#3      ------------------------------------------------------------
consensus_7801#2      -------------------------------------------------------GTCAA 5
consensus_7801#1      TGATTGTGTCTATCTTCACTGGTACGTCTTATTGGAAGAATTCGTCTGTGTCTTCGTTGT 60
                                                                                  

consensus_7801#0      ----------ATGCGTGGTGGAGCTGTTGCACAAGATGGTCGAATAGAACCTGGAGATAT 50
consensus_7801#3      ------------------------------ACAAGATGGTCGAGTAGAATCTGGAGATAT 30
consensus_7801#2      AATAAAAATTCTACAAACTTCAACAAAGCTCCTGACAATATACACAGTGTCTCAAAAAAT 65
consensus_7801#1      CTTCTATGTCTTGGATATTTAGCCGAAGACA-TAGTTGTACCTGTTGCTGTTGAAAATCT 119
                                                                    *    *  * *  *

consensus_7801#0      GATA---------CTAGAAGTAAATAGAATCA-GCTTCGAAGATATGAG----TAAT-GA 95
consensus_7801#3      GATA---------CTAGAAGTAAATAGAATCA-GCTTCGAAGATATGAG----TAAT-GA 75
consensus_7801#2      GAAA---------TCCCCAGCGAACAAGAACATGCCATTGGGACAACAGGGCATGGT-CT 115
consensus_7801#1      GCTTGATTCGTCTTCTGAATCGAAAAAGCTTGTGGATTCCAGATCTGAACTCATCATAGA 179
                      *                 *   ** *       *       **    *     *  *   

consensus_7801#0      TGAAGC--TGTAAGAGTTTTA-----CGTGAGGAAGTTCAAAA----------ACCTGGG 138
consensus_7801#3      TGAAGC--TGTAAGAGTTTTA-----CGTGAGGAAGTTCAAAA----------ACCTGGT 118
consensus_7801#2      TGAGGAA-TGTGATACTTGTG-----TCGAAACAGACTCAGTATATAGCGGTGATCGGGT 169
consensus_7801#1      TGAAGAAGTTTCATAATTTTGAATTCTTTGACCAAGTTTAGCCAAGCGC---GAACCATG 236
                      *** *   * * * * ** *          *  *   * *             * *    

consensus_7801#0      TAATTCACGGT-GTACTTACTATTTGTCCAGTTATATAT--TAT--TTATTCTTATTTTC 193
consensus_7801#3      CCTATCACTTTAGTGGTTGCAATAATTACAAGCATGGTT--CGCGCTTGGCTAAACTTGG 176
consensus_7801#2      TCCGCCTCTGA-AAAATTTTCATAATTACAAGCATGGTT--CGCGCTTGGCTAAACTTGG 226
consensus_7801#1      CTTGTAATTATGAAAATTTTTCAGAGGCGGAACCCGATCACCGCTATATACTGAGTCTGT 296
                                      **                            *          *  

consensus_7801#0      T----CACCAAACTTCTAAAAGTAAACTTCATTTCAAAAGAATC--ATAATAAGGCAAAT 247
consensus_7801#3      T----CAAAGAATTCAAAATTATGAAACTTCTTC------ATCT--ATGATGAGTTCAGA 224
consensus_7801#2      T----CAAAGAATTCAAAATTATGAAACTTCTTC------ATCT--ATGATGAGTTCAGA 274
consensus_7801#1      TTCGACACAAGTATCACATTCCTCAAGACCATGCCCTGTTGTCCCAATGGCATGTTCTTG 356
                      *    **      *   *    * **     *              **     *      

consensus_7801#0      ACCACAA-CAATGAATGATCATCATAGTTTGCTTGTAGGAGTTCAAGTTTTTGCATCATA 306
consensus_7801#3      ------------------------------------------------------------
consensus_7801#2      TCTGGAATCCACAAGCTTTTTCGATTCAGAAGACGAATCAAGCAGATTTTCAACAGCAAC 334
consensus_7801#1      TTCGCTGGGGATTTCATTTTTTGAGACACGGTGTATATTGTCAGGAGCTTTGTTGAAGTT 416
                                                                                  

consensus_7801#0      AACTGATATTTGGTGATTAACCACTTG-----CTAAGGAAATCATAGGTTATCCACTTTT 361
consensus_7801#3      ------------------------------------------------------------
consensus_7801#2      AGGTACAACTATGTCTTCGGCTAAATA-----TCCAAGACATAGAAGACAACGAAGACAC 389
consensus_7801#1      TGTAGAATTTTTATTTTGACCGNGAAGGTGATTCTCGCCTGTGCCGGNTGAATGGTTATC 476
                                                                                  

consensus_7801#0      TGTCAATACATGTTAATTTATATGTGATAACGATAACTACGAGTGCAATTTTTTCTAAAT 421
consensus_7801#3      ------------------------------------------------------------
consensus_7801#2      AGACGG-ATTCTTCCAATAAGACGTACCAGTGAAGATGCTACTTCTTTTAG--------- 439
consensus_7801#1      TGATTTTGTACTGCTATCTGCAGAAACCAGCCATGAAATAACTTTTCCATTTGAACATGG 536
                                                                                  

consensus_7801#0      CATATTTTCGCATGACTTTCGCTTTTTTCTGATTGTAGAGACATGCTTTTGTTAGCCTAT 481
consensus_7801#3      ------------------------------------------------------------
consensus_7801#2      ------------------------------------------------------------
consensus_7801#1      CAGTCTCGCATCATC--------------------------------------------- 551
                                                                                  

consensus_7801#0      ATATACGGAATTTTACCATTTTATCTGCCTAATCATCACGTTTTCCGGCATTCTCACCTT 541
consensus_7801#3      ------------------------------------------------------------
consensus_7801#2      ------------------------------------------------------------
consensus_7801#1      ------------------------------------------------------------
                                                                                  

consensus_7801#0      GTATTCCTTCGTAATCGTGGGTTATTGTTGAAGTATAGTGTATCAGTTGTCTTTCTATCG 601
consensus_7801#3      ------------------------------------------------------------
consensus_7801#2      ------------------------------------------------------------
consensus_7801#1      ------------------------------------------------------------
                                                                                  

consensus_7801#0      AATCCGCCATTGAACATATTCGTAGTAGAATAAGCTCTATTTTTTTCCAATTTTAACGAT 661
consensus_7801#3      ------------------------------------------------------------
consensus_7801#2      ------------------------------------------------------------
consensus_7801#1      ------------------------------------------------------------
                                                                                  

consensus_7801#0      TACC 665
consensus_7801#3      ----
consensus_7801#2      ----
consensus_7801#1      ----