cluster # 7805

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Schistosoma mansoni
cluster # 7805 cluster # 7805 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7805#0 length = 489 sequences # 3

consensus_7805#1 length = 453 sequences # 2

consensusID : consensus_7805#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 489
fasta sequence

                              [TACCGATTGCTACCAAATTATTTACCACTCCGATGCCACTCAGAAAGAAGACCAATGAGGTGGTAACGAGGGGTCGTAGTAAATCAACTAGTCGGGGTACTTCAAAAATTCGTTCACGAACCCCAAGCTCTGCACGGTCTCGATCAAAAACACCTACTAGGCGAGCGCGTACGCCCGCCTCTGAGTCCAAGGTGAGGCGTAGACGTTCTCCTAGCCCTGACCCTAGTGAAGAATCTGTGAAAAGTGTTACAAAAACAACCCAGTATACTGAGACTGTGTTTGATCGCCCTGCCCAAACTGACGTATTAAAATCATTGCCTCTAAACCATGGACTATCTCGTTTTTCCCAAAAAATTGTCAAGAAAATAGAAACAGATAAACCAACTCATATCTATCAGGAAGGACTAGTTCACAAGTCGGAAGCGACCCAACTACACAAACCAGTAACACTAACTCCACTCTTGACAAATTATCGTAAAACGTTGTTTA]

[+] EMBL AI975072             [TACCGATTGCTACCAAATTATTTACCACTCCGATGCCACTCAGAAAGAAGACCAATGAGGTGGTAACGAGGGGTCGTAGTAAATCAACTAGTCGGGGTACTTCAAAAATTCGTTCACGAACCCCAAGCTCTGCACGGTCTCGATCAAAAACACCTACTAGGCGAGCGCGTACGCCCGCCTCTGAGTCCAAGGTGAGGCGTAGACGTTCTCCTAGCCCTGACCCTAGTGAAGAATCTGTGAAAAGTGTTACAAAAACAACCCAGTATACTGAGACTGTGTTTGATCGCCCTGCCCAAACTGACGTATTAAAATCATTGCCTCTAAACCATGGACTATCTCGTTTTTCCCAAAAAATTGTCAAGAAAATAGAAACAGATAAACCAACTCATATCTATCAGGAAGGACTAGTTCACAAGTCGGAAGCGACCCAACTACACAAACCAGTAACACTAACTCCACTCTTGACAAATTATCGTAAAACGTTGTTTA]
[+] EMBL CD132502             [                                                                                                                                                                                                                                      GAATCTGTGAAAAGTGTTACAAAAACAACCCAGTATACTGAGACTGTGTTTGATCGCCCTGCCCAAACTGACGTATTAAAATCATTGCCTCTAAACCATGGACTATCTCGTTTTTCCCAAAAAATTGTCAAGAAAATAGAAACAGATAAACCA                                                                                                          ]
[-] EMBL CD132513             [                                                                                                                                                                                                                                       AATCTGTGAAAAGTGTTACAAAAACAACCCAGTATACTGAGACTGTGTTTGATCGCCCTGCCCAAACTGACGTATTAAAATCATTGCCTCTAAACCATGGACTATCTCGTTTTTCCCAAAAAATTGTCAAGAAAATAGAAACAGATAAACCAA                                                                                                         ]




>consensus_7805#0
TACCGATTGCTACCAAATTATTTACCACTCCGATGCCACTCAGAAAGAAGACCAATGAGG
TGGTAACGAGGGGTCGTAGTAAATCAACTAGTCGGGGTACTTCAAAAATTCGTTCACGAA
CCCCAAGCTCTGCACGGTCTCGATCAAAAACACCTACTAGGCGAGCGCGTACGCCCGCCT
CTGAGTCCAAGGTGAGGCGTAGACGTTCTCCTAGCCCTGACCCTAGTGAAGAATCTGTGA
AAAGTGTTACAAAAACAACCCAGTATACTGAGACTGTGTTTGATCGCCCTGCCCAAACTG
ACGTATTAAAATCATTGCCTCTAAACCATGGACTATCTCGTTTTTCCCAAAAAATTGTCA
AGAAAATAGAAACAGATAAACCAACTCATATCTATCAGGAAGGACTAGTTCACAAGTCGG
AAGCGACCCAACTACACAAACCAGTAACACTAACTCCACTCTTGACAAATTATCGTAAAA
CGTTGTTTA

consensusID : consensus_7805#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 453
fasta sequence

                              [CTCGGAGATTTCAGCGAAAGCAAACAACCCGATGAAGATGACAAAAGATATCAGGCTATTACAGCGGTAGTCGATATTTCGGTGCCCTGTAGTAACCATTCGACCAATAGGGAGAAAACGAGCAACTAGACACTGTAACAAAAGATACATGAAAACGAGCACGGAACTCTGGATATTGATATAGTTGTGCCAGTCAGTTGGCCAAAGAACTCCAAGGAATGGACGTGCAGGACCCCACAAACTTTTGTTATCTCCTGTTGGCCAAAGAATTTCAATTAGTGGAAACGCAGATTCCCATAAGCTTTTGTTTTCTCCAGAAAAATTGCTTATTGAAATGGGTGCGAATATCAGAAGATTCAGCCAGTAAACAAATGGTACAATGAACAGTACTTGAATAATGGCAACAACAGTTGGACTAAACAACGTTTTACGATCATTTGTCCAGAGTGGAGT]

[+] EMBL CD187997             [CTCGGAGATTTCAGCGAAAGCAAACAACCCGATGAAGATGACAAAAGATATCAGGCTATTACAGCGGTAGTCGATATTTCGGTGCCCTGTAGTAACCATTCGACCAATAGGGAGAAAACGAGCAACTAGACACTGTAACAAAAGATACATGAAAACGAGCACGGAACTCTGGATATTGATATAGTTGTGCCAGTCAGTTGGCCAAAGAACTCCAAGGAATGGACGTGCAGGACCCCACAAACTTTTGTTATCTCCTGTTGGCCAAAGAATTTCAATTAGTGGAAACGCAGATTCCCATAAGCTTTTGTTTTCTCCAGAAAAATTGCTTATTGAAATGGGTGCGAATATCAGAAGATTCAGCCAGTAAACAAATGGTACAATGAACAGTACTTGAATAATGGCAACAACAGTTGGACTAAACAACGTTTTACGATCATTTGTCCAGAGTGGAGT]
[+] EMBL CD187926             [CTCGGAGATTTCAGCGAAAGCAAACAACCCGATGAAGATGACAAAAGATATCAGGCTATTACAGCGGTAGTCGATATTTCGGTGCCCTGTAGTAACCATTCGACCAATAGGGAGAAAACGAGCAACTAGACACTGTAACAAAAGATACATGAAAACGAGCACGGAACTCTGGATATTGATATAGTTGTGCCAGTCAGTTGGCCAAAGAACTCCAAGGAATGGACGTGCAGGACCCCACAAACTTTTGTTATCTCCTGTTGGCCAAAGAATTTCAATTAGTGGAAACGCAGATTCCCATAAGCTTTTGTTTTCTCCAGAAAAATTGCTTATTGAAATGGGTGCGAATATCAGAAGATTCAGCCAGTAAACAAA                                                                                 ]




>consensus_7805#1
CTCGGAGATTTCAGCGAAAGCAAACAACCCGATGAAGATGACAAAAGATATCAGGCTATT
ACAGCGGTAGTCGATATTTCGGTGCCCTGTAGTAACCATTCGACCAATAGGGAGAAAACG
AGCAACTAGACACTGTAACAAAAGATACATGAAAACGAGCACGGAACTCTGGATATTGAT
ATAGTTGTGCCAGTCAGTTGGCCAAAGAACTCCAAGGAATGGACGTGCAGGACCCCACAA
ACTTTTGTTATCTCCTGTTGGCCAAAGAATTTCAATTAGTGGAAACGCAGATTCCCATAA
GCTTTTGTTTTCTCCAGAAAAATTGCTTATTGAAATGGGTGCGAATATCAGAAGATTCAG
CCAGTAAACAAATGGTACAATGAACAGTACTTGAATAATGGCAACAACAGTTGGACTAAA
CAACGTTTTACGATCATTTGTCCAGAGTGGAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7805#0      --TACCGATTGCTACCAAATTATTTACCACTCCGATGCCACTCAGAAAGAAGACCAATGA 58
consensus_7805#1      CTCGGAGATTTCAGCGAAAGCA---AACAACCCGATGAAGATGACAAAAGATATCAG-GC 56
                            **** *  * ***  *   * **  ******    * * ***  * * **  * 

consensus_7805#0      GGTGGTAACGAGGGGTCGTAGTAAATCAACTAGTCGGGGTACTTCAAAAATTCGTTCACG 118
consensus_7805#1      TATTACAGCGGTAGTCGATATTTCGGTGCCCTGTAGTAACCATTCGACCAATAGGGAGAA 116
                        *   * **   *    ** *       *  ** *      *** *  * * *      

consensus_7805#0      AACCCCAAGCTCTGCACGGTCTCGATCAAAAACACCTACTAGGCGAGCGCGTACGCCCGC 178
consensus_7805#1      AACGAGCAACTAGACACTGT---AACAAAAGATACATGA-AAACGAGCACGGAA------ 166
                      ***    * **   *** **    *  *** * ** *   *  ***** ** *       

consensus_7805#0      CTCTGAGTCCAAGGTGAGGCGTAGACGTTCTCCTAGCCCTGACCCTAGTGAAGAATCTGT 238
consensus_7805#1      CTCTGGATATT------GATATAG---TTGTGCCAGTC----AGTTGGCCAAAGAACTCC 213
                      *****  *         *   ***   ** * * ** *       * *  **  * **  

consensus_7805#0      GAAAAGTGTTACAAAAACAACCCAGTATACTGAGACTGTGTTTGATCGCCCTGCCCAAAC 298
consensus_7805#1      AAGGAATGG-ACGTGCAGGACCCCACAAACTTTTGTTATCTCCTGTTGGCCAAAG-AATT 271
                       *  * **  **    *  ****   * ***     * * *    * * **     **  

consensus_7805#0      TGACGTATTAAAATCATTGCCTCTAAACCATGGACTATCTCGTTTTTCCCAAAAAATTG- 357
consensus_7805#1      TCAATTAGTGGAAACGCAGATTC----CCATAAGCT-TTTGTTTTCTCCAGAAAAATTGC 326
                      * *  ** *  ** *   *  **    ****   ** * *  *** ***  ******** 

consensus_7805#0      TCAAGAAAATAGAAACAGATAAACCAACTCATATCTATCAGGAAGGACTAGTTCACAAGT 417
consensus_7805#1      TTATTGAAATGGGTGCGAATATCAGAAGATTCAGCCAGTA--AACAAATGGTACAATGAA 384
                      * *   **** *   *  ***    **     * * *  *  **  * * ** **     

consensus_7805#0      CGGAAGCGACCCAACTACACAAACCAGTAACACTAACTCCACTCTTGACAAATTATCGTA 477
consensus_7805#1      CAGTACTTGAATAATGGCA-ACAACAGTTGGACTAAA-CAACGTTTTACGATCATTTGTC 442
                      * * *       **   ** * * ****   *****  * **  ** ** *    * ** 

consensus_7805#0      AAACGTTGTTTA 489
consensus_7805#1      CAGAGTGGAGT- 453
                       *  ** *  *