cluster # 7816

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Schistosoma mansoni
cluster # 7816 cluster # 7816 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7816#0 length = 776 sequences # 2

consensus_7816#1 length = 688 sequences # 2
consensus_7816#2 length = 354 sequences # 1

consensusID : consensus_7816#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 776
fasta sequence

                              [TATAGATGGAATTAGACCAGCACGACCATCTTGATTATGAAGTCTTGCCTGCCACCAATAAGGATCTTCTTGTTTAAGAACTTGAAGGATAGAACCAGCTGAAAATTTTAAACCAGCTTCTTTGCACGGAATCAAATTATCATTTTTCGGATCATACGAAAAGTGAGCTCGAAGAAAAGGTTGGGAAGAAATAGGAGTTGATTGGTAACCAGGAATGATTTTCAGTGTGACGTTTCCAGATGCATTTTTTAATACTTTCTGTAATACTTCAGGATTATCAACTGGAACTCCATTTGCTTCACGAATCACATCACCTACGTGTAGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAATTCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAATAACAGTGAAACCTAATACTAAATTCCCGAACAATTTTTTCGACAACACTTTGTGGAGTTCAGAAGCATCTTGATCGTTGAAGTGTTTTTTAATATTTTTCTTGACCTTTTTGAGGGCGGCTACTGAATGTCTTTGCTTCATGACAAAACTGAAGATAGCTCTGGACGTCGGTATATTGCAGTTTATTCTATAGAATTGTTTTTATACAGAGAGGCCGCAGAGTACTGAACTCGGGTGTTGAACAATCATGCATAACCTGCACAAAAGTAAAAATATAAAAGCTCTGTAAAGTTTCCTTTAGCATGAGGTAAGAAAAGCATACTTCAAGTTTCTACCGAACACCAAACATCGCGCTA]

[-] EMBL CD065514             [TATAGATGGAATTAGACCAGCACGACCATCTTGATTATGAAGTCTTGCCTGCCACCAATAAGGATCTTCTTGTTTAAGAACTTGAAGGATAGAACCAGCTGAAAATTTTAAACCAGCTTCTTTGCACGGAATCAAATTATCATTTTTCGGATCATACGAAAAGTGAGCTCGAAGAAAAGGTTGGGAAGAAATAGGAGTTGATTGGTAACCAGGAATGATTTTCAGTGTGACGTTTCCAGATGCATTTTTTAATACTTTCTGTAATACTTCAGGATTATCAACTGGAACTCCATTTGCTTCACGAATCACATCACCTACGTGTAGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAATTCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAATAACAGTGAAACCTAA                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD128984             [                                                                                                                                                                                                                                                                                                                 gagCATCACCTACGTGTAGCAATTCCAGCTGTTCAACATGAGAAGCACCTAAAATTCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAATAACAGTGATACCCTCTACTAAATTCCCGAACAATTTTTTCGACAACACTTTGTGGAGTTCAGAAGCATCTTGATCGTTGAAGTGTTTTTTAATATTTTTCTTGACCTTTTTGAGGGCGGCTACTGAATGTCTTTGCTTCATGACAAAACTGAAGATAGCTCTGGACGTCGGTATATTGCAGTTTATTCTATAGAATTGTTTTTATACAGAGAGGCCGCAGAGTACTGAACTCGGGTGTTGAACAATCATGCATAACCTGCACAAAAGTAAAAATATAAAAGCTCTGTAAAGTTTCCTTTAGCATGAGGTAAGAAAAGCATACTTCAAGTTTCTACCGAACACCAAACATCGCGCTA]




>consensus_7816#0
TATAGATGGAATTAGACCAGCACGACCATCTTGATTATGAAGTCTTGCCTGCCACCAATA
AGGATCTTCTTGTTTAAGAACTTGAAGGATAGAACCAGCTGAAAATTTTAAACCAGCTTC
TTTGCACGGAATCAAATTATCATTTTTCGGATCATACGAAAAGTGAGCTCGAAGAAAAGG
TTGGGAAGAAATAGGAGTTGATTGGTAACCAGGAATGATTTTCAGTGTGACGTTTCCAGA
TGCATTTTTTAATACTTTCTGTAATACTTCAGGATTATCAACTGGAACTCCATTTGCTTC
ACGAATCACATCACCTACGTGTAGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAAT
TCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAAT
AACAGTGAAACCTAATACTAAATTCCCGAACAATTTTTTCGACAACACTTTGTGGAGTTC
AGAAGCATCTTGATCGTTGAAGTGTTTTTTAATATTTTTCTTGACCTTTTTGAGGGCGGC
TACTGAATGTCTTTGCTTCATGACAAAACTGAAGATAGCTCTGGACGTCGGTATATTGCA
GTTTATTCTATAGAATTGTTTTTATACAGAGAGGCCGCAGAGTACTGAACTCGGGTGTTG
AACAATCATGCATAACCTGCACAAAAGTAAAAATATAAAAGCTCTGTAAAGTTTCCTTTA
GCATGAGGTAAGAAAAGCATACTTCAAGTTTCTACCGAACACCAAACATCGCGCTA

consensusID : consensus_7816#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 688
fasta sequence

                              [TATAGATGGAATTAGACCAGCACGACCATCTTGATTATGATGTCTTGCCTGCCACCAATAAGGATCTTCTTGTTTAAGAACTTGAAGGATAGAACCAGCTGAAAATTTTAAACCAGCTTCTTTGCACGGAATCAAATTATCATTTTTCGGATCATACGAAAAGTGAGCTCGAAGAAAAAGTTGGGAAGAAATAGGAGTTGATTGGTAACCAGGAATGATTTTCAGTGTGACGTTTCCAGATGCATTTTTTAATACTTTCTGTAATACCTCAGGATTATCAACTGGAACTCCATTTGCTTCACGAATCACATCACCTACGTGTAGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAATTCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAATAACAGTGATACCTAAATCTTCACCAAAGTTCTTTTGAATCCCGATCATTTTTACTGCACCATCTACAGGTGGCAATGCTGGACCATCGCCACCTCCAGTAAGTGTAGCTTCTTTTTTTCTCAAGTCAGTATACACTTTTTCACTACCGGCACCATACATAATTGATCGNGAATTACATAGTTCATTGGGAATTCCATTTCGATCATCTTTAAAAACGGCCATCCCCCAAAACTTTTGTCAACCACTTTGAAATTAGATGCTTTACTGG]

[-] EMBL CD065515             [TATAGATGGAATTAGACCAGCACGACCATCTTGATTATGATGTCTTGCCTGCCACCAATAAGGATCTTCTTGTTTAAGAACTTGAAGGATAGAACCAGCTGAAAATTTTAAACCAGCTTCTTTGCACGGAATCAAATTATCATTTTTCGGATCATACGAAAAGTGAGCTCGAAGAAAAAGTTGGGAAGAAATAGGAGTTGATTGGTAACCAGGAATGATTTTCAGTGTGACGTTTCCAGATGCATTTTTTAATACTTTCTGTAATACCTCAGGATTATCAACTGGAACTCCATTTGCTTCACGAATCACATCACCTACGTGTAGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAATTCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAATAACAGTGATACCTAAATCTTCACCAAAGTTC                                                                                                                                                                                                                                             ]
[+] EMBL CD066331             [                                                                                                                                                                                                                             ggAGGGTGACGCCTCCAGATGCATTTTTTAATACTTTCTGTAATACTTCAGGATTATCAACTGGAACTCCATTTGCTTAACGAATCACATCACCTACGTGTCGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAATTCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAATAACAGTGATACCTAAATCTTCACCATGGGTCTTTTGAATCCCGATCATTTTTACTGCACCATCTACAGGTGGCAATGCTGGACCATCGCCACCTCCAGTAAGTGTAGCTTCTTTTTTTCTCAAGTCAGTATACACTTTTTCACTACCGGCACCATACATAATTGATCGNGAATTACATAGTTCATTGGGAATTCCATTTCGATCATCTTTAAAAACGGCCATCCCCCAAAACTTTTGTCAACCACTTTGAAATTAGATGCTTTACTGG]




>consensus_7816#1
TATAGATGGAATTAGACCAGCACGACCATCTTGATTATGATGTCTTGCCTGCCACCAATA
AGGATCTTCTTGTTTAAGAACTTGAAGGATAGAACCAGCTGAAAATTTTAAACCAGCTTC
TTTGCACGGAATCAAATTATCATTTTTCGGATCATACGAAAAGTGAGCTCGAAGAAAAAG
TTGGGAAGAAATAGGAGTTGATTGGTAACCAGGAATGATTTTCAGTGTGACGTTTCCAGA
TGCATTTTTTAATACTTTCTGTAATACCTCAGGATTATCAACTGGAACTCCATTTGCTTC
ACGAATCACATCACCTACGTGTAGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAAT
TCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAAT
AACAGTGATACCTAAATCTTCACCAAAGTTCTTTTGAATCCCGATCATTTTTACTGCACC
ATCTACAGGTGGCAATGCTGGACCATCGCCACCTCCAGTAAGTGTAGCTTCTTTTTTTCT
CAAGTCAGTATACACTTTTTCACTACCGGCACCATACATAATTGATCGNGAATTACATAG
TTCATTGGGAATTCCATTTCGATCATCTTTAAAAACGGCCATCCCCCAAAACTTTTGTCA
ACCACTTTGAAATTAGATGCTTTACTGG

consensusID : consensus_7816#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence

                              [ACGGATCAATAGTTAATGGACCATCATAAAGTGCTTCTACTAAGTCTTTGGTAATAGCATTTAGATCTGTATCTTCATTTGGTACTTATTCACAAGGATAAGATATTAGATCAAATATCTCTACTAAATTCCCGAACAATTTTTTCGACAACACTTTGTGGAGTTCAGAAGCATCTTGATCGTTGAAGTGTTTTTTAATATTTTTCTTGACCTTTTTGAGGGCGGCTACTGAATGTCTTTGCTTCATGACAAAACTGAAGATAGCTCTGGACGTCGGTATATTGCAGTTTATTCTATAGAATTGTTTTTATACAGAGAGGCCGCAGAGTACTGAACTCGGGTNGTGAAACATCA]

[+] EMBL CD111881             [ACGGATCAATAGTTAATGGACCATCATAAAGTGCTTCTACTAAGTCTTTGGTAATAGCATTTAGATCTGTATCTTCATTTGGTACTTATTCACAAGGATAAGATATTAGATCAAATATCTCTACTAAATTCCCGAACAATTTTTTCGACAACACTTTGTGGAGTTCAGAAGCATCTTGATCGTTGAAGTGTTTTTTAATATTTTTCTTGACCTTTTTGAGGGCGGCTACTGAATGTCTTTGCTTCATGACAAAACTGAAGATAGCTCTGGACGTCGGTATATTGCAGTTTATTCTATAGAATTGTTTTTATACAGAGAGGCCGCAGAGTACTGAACTCGGGTNGTGAAACATCA]




>consensus_7816#2
ACGGATCAATAGTTAATGGACCATCATAAAGTGCTTCTACTAAGTCTTTGGTAATAGCAT
TTAGATCTGTATCTTCATTTGGTACTTATTCACAAGGATAAGATATTAGATCAAATATCT
CTACTAAATTCCCGAACAATTTTTTCGACAACACTTTGTGGAGTTCAGAAGCATCTTGAT
CGTTGAAGTGTTTTTTAATATTTTTCTTGACCTTTTTGAGGGCGGCTACTGAATGTCTTT
GCTTCATGACAAAACTGAAGATAGCTCTGGACGTCGGTATATTGCAGTTTATTCTATAGA
ATTGTTTTTATACAGAGAGGCCGCAGAGTACTGAACTCGGGTNGTGAAACATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7816#0      TATAGATGGAATTAGACCAGCACGACCATCTTGATTATGAAGTCTTGCCTGCCACCAATA 60
consensus_7816#2      ------------------------------------------------------------
consensus_7816#1      TATAGATGGAATTAGACCAGCACGACCATCTTGATTATGATGTCTTGCCTGCCACCAATA 60
                                                                                  

consensus_7816#0      AGGATCTTCTTGTTTAAGAACTTGAAGGATAGAACCAGCTGAAAATTTTAAACCAGCTTC 120
consensus_7816#2      ------------------------------------------------------------
consensus_7816#1      AGGATCTTCTTGTTTAAGAACTTGAAGGATAGAACCAGCTGAAAATTTTAAACCAGCTTC 120
                                                                                  

consensus_7816#0      TTTGCACGGAATCAAATTATCATTTTTCGGATCATACGAAAAGTGAGCTCGAAGAAAAGG 180
consensus_7816#2      ------------------------------------------------------------
consensus_7816#1      TTTGCACGGAATCAAATTATCATTTTTCGGATCATACGAAAAGTGAGCTCGAAGAAAAAG 180
                                                                                  

consensus_7816#0      TTGGGAAGAAATAGGAGTTGATTGGTAACCAGGAATGATTTTCAGTGTGACGTTTCCAGA 240
consensus_7816#2      ------------------------------------------------------------
consensus_7816#1      TTGGGAAGAAATAGGAGTTGATTGGTAACCAGGAATGATTTTCAGTGTGACGTTTCCAGA 240
                                                                                  

consensus_7816#0      TGCATTTTTTAATACTTTCTGTAATACTTCAGGATTATCAACTGGAACTCCATTTGCTTC 300
consensus_7816#2      ------------------------------------------------------------
consensus_7816#1      TGCATTTTTTAATACTTTCTGTAATACCTCAGGATTATCAACTGGAACTCCATTTGCTTC 300
                                                                                  

consensus_7816#0      ACGAATCACATCACCTACGTGTAGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAAT 360
consensus_7816#2      ACGGATCA-ATAGTTAATGGACCATCA-TAAAGTGCTTCTAC-TAAGTCTTTGGTAATAG 57
consensus_7816#1      ACGAATCACATCACCTACGTGTAGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAAT 360
                      *** **** **     * *       * *  **   *** ** * **     * *** * 

consensus_7816#0      TCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAAT 420
consensus_7816#2      -CATTTAG--ATCTGTATCTTCATTTGGTACTTATTCACAAGGATA---AGATATTAGAT 111
consensus_7816#1      TCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAAT 420
                       * ****   * * **  ***** *      * **   **   ***    * * **  **

consensus_7816#0      AACAGTGAAACCT-----AATACTAAATTCCC---GAA---CAATTTTTTCGACAACACT 469
consensus_7816#2      CA----AATATCT-----C-TACTAAATTCCC---GAA---CAATTTTTTCGACAACACT 155
consensus_7816#1      AACAGTGATACCTAAATCTTCACCAAAGTTCTTTTGAATCCCGATCATTTTTACTGCACC 480
                       *     * * **        ** *** * *    ***   * **  ***  **  *** 

consensus_7816#0      TTGTGGAGTTCAGAAGCATCTTGATCGTTGAAGTGTTTTTTAATATTTTTCTTGACCTTT 529
consensus_7816#2      TTGTGGAGTTCAGAAGCATCTTGATCGTTGAAGTGTTTTTTAATATTTTTCTTGACCTTT 215
consensus_7816#1      ATCTACAGGTGGCAATG--CTGGACCATCGCCACCTCCAGTAAGTGTAGCTTCTTTTTTT 538
                       * *  ** *   **    ** ** * * *     *    ***   *    *     ***

consensus_7816#0      TTGAGGGCGGCTACTGAATGTCTTTGCTTCATGACAAAACTGAAGATAGCTCTGGACGTC 589
consensus_7816#2      TTGAGGGCGGCTACTGAATGTCTTTGCTTCATGACAAAACTGAAGATAGCTCTGGACGTC 275
consensus_7816#1      CTCAAGTCAGT--ATACACTTTTTCACTAC-CGGCACCATACATAATTGATCGNGAATTA 595
                       * * * * *    *  *  * **  ** *  * **  *   *  ** * **  **  * 

consensus_7816#0      GGTATATTGCAGTTTATTCTATAG-AATTGTTTTTATACAGAGAGGCCGCAGAGTACTGA 648
consensus_7816#2      GGTATATTGCAGTTTATTCTATAG-AATTGTTTTTATACAGAGAGGCCGCAGAGTACTGA 334
consensus_7816#1      CATAGTTCATTGGGAATTCCATTTCGATCATCTTTAAAAACGGCCATCCCCCAAAACTTT 655
                        **  *    *   **** **    **  * **** * *  *    * *  *  ***  

consensus_7816#0      ACTCGGGTGTTGAACAATCATGCATAACCTGCACAAAAGTAAAAATATAAAAGCTCTGTA 708
consensus_7816#2      ACTCGGGTNGTGAAACATCA---------------------------------------- 354
consensus_7816#1      TGTCAACCACTTTGAAATTAGATGCTTTACTGG--------------------------- 688
                        **      *     ** *                                        

consensus_7816#0      AAGTTTCCTTTAGCATGAGGTAAGAAAAGCATACTTCAAGTTTCTACCGAACACCAAACA 768
consensus_7816#2      ------------------------------------------------------------
consensus_7816#1      ------------------------------------------------------------
                                                                                  

consensus_7816#0      TCGCGCTA 776
consensus_7816#2      --------
consensus_7816#1      --------