cluster # 7825

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7825 cluster # 7825 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7825#0 length = 477 sequences # 4

consensus_7825#1 length = 255 sequences # 1

consensusID : consensus_7825#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 477
fasta sequence

                              [TGGTATGATTTTTAATGTTTCTAAGTCCTGTAGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATGTACAGGAAGAAGCTACGGAAGAAGACATTCGAGATAAATTCTGTGAATACGGCGATATCAAAAATATACACCTTAACCTTGATCGGCGAACTGGTTATTTAAAAGGATATGCATTAGTAGAATATGAAAATTTCAAGGAAGCATTTACTGCTATGGAACATCTAAATGGTTCTGAGCTAAATGGTCAAAGAATTCTTGTAGATTGGGCGTTTACGAAAGGTCCAAATCCAATCAAGATGTCAACCAAACACAGAACACGTGAACGTAGTAGAAGTCGGTCAGTTGACCGTGCTCGACGATAATTGTACTCATCCTCTAGATGAAATATGTTTT]

[+] EMBL CD078327             [TGGTATGATTTTTAATGTTTCTAAGTCCTGTAGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATGTACAGGAAGAAGCTACGGAAGAAGACATTCGAGATAAATTCTGTGAATACGGCGATATCAAAAATATACACCTTAACCTTGATCGGCGAACTGGTTATTTAAAAGGATATGCATTAGTAGAATATGAAAATTTCAAGGAAGCATTTACTGCTATGGAACATCTAAATGGTTCTGAGCTAAATGGTCAAAGAATTCTTGTAGATTGGGCGTTTACGAAAGGTCCAAATCCAATCAAGATGTCAACCAACCACAGAACACGTGAACGTACTACACGCCGCTCAGTTGACCGCGCTCGACAATAATTGCACTCATCCTCTAAATGAAACATcgctt]
[+] EMBL CD078247             [TGGTATGATTTTTAATGTTTCTAAGTCCTGTAGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATGTACAGGAAGAAGCTACGGAAGAAGACATTCGAGATAAATTCTGTGAATACGGCGATATCAAAAATATACACCTTAACCTTGATCGGCGAACTGGTTATTTAAAAGGATATGCATTAGTAGAATATGAAAATTTCAAGGAAGCATTTACTGCTATGGAACATCTAAATGGTTCTGAGCTAAATGGTCAAAGAATTCTTGTAGATTGGGCGTTTACGAAAGGTCCAAATCCAATCAAGATGTCAACCAAACACAGAACACGTGAACGTAGTAAAAGTCGGTCAGTTGACCGTGCTCGACGATAATTGTACTCATCCTCTAGATGAAATATGTTT ]
[-] EMBL CD072885             [           TTAATGTTTCTAAGTCCTGTAGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATGTACAGGAAGAAGCTACGGAAGAAGACATTCGAGATAAATTCTGTGAATACGGCGATATCAAAAATATACACCTTAACCTTGATCGGCGAACTGGTTATTTAAAAGGATATGCATTAGTAGAATATGAAAATTTCAAGGAAGCATTTACTGCTATGGAACATCTAAATGGTTCTGAGCTAAATGGTCAAAGAATTCTTGTAGATTGGGCGTTTACGAAAGGTCCAAATCCAATCAAGATGTCAACCAAACACAGAACACGTGAACGTAGTAGAAGTCGGTCAGTTGACCGTGCTCGACGATAATTGTACTCATCCTCTAGATGAAATATGTTT ]
[+] EMBL CD137822             [                               tGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATGTACAGGAAGAAGCTACGGAAGAAGACATTCGAGATAAATTCTGTGAATACGGCGATATCAAAAATATACACCTTAACCTTGATCGGCGAACTGGTTATTTAAAAGGATATGCATTAGTAGAATATGAAAATTTCAAGGAAGCATTTACTGCTATGGAACATCTAAATGGTTCTGAGCTAAATGGTCAAAGAATTCTTGTAGATTGGGCGTTTACGAAAGGTCCAAATCCAATCAAGATGTCAACCAAACACAGAACACGTGAACGTAGTAGAAGTCGGTCAGTTGACCGTGCTCGACGATAATTGTACT                        ]




>consensus_7825#0
TGGTATGATTTTTAATGTTTCTAAGTCCTGTAGACTCAGTCGGAACGACAAAAGAAGGGT
ATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAG
GTTGGATCTTGTTTGTAAGGAATGTACAGGAAGAAGCTACGGAAGAAGACATTCGAGATA
AATTCTGTGAATACGGCGATATCAAAAATATACACCTTAACCTTGATCGGCGAACTGGTT
ATTTAAAAGGATATGCATTAGTAGAATATGAAAATTTCAAGGAAGCATTTACTGCTATGG
AACATCTAAATGGTTCTGAGCTAAATGGTCAAAGAATTCTTGTAGATTGGGCGTTTACGA
AAGGTCCAAATCCAATCAAGATGTCAACCAAACACAGAACACGTGAACGTAGTAGAAGTC
GGTCAGTTGACCGTGCTCGACGATAATTGTACTCATCCTCTAGATGAAATATGTTTT

consensusID : consensus_7825#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [ACTGACCATTTGTTATCTATTAGGATGGCTGATGTATTGGATTTACATGGAGAGAATGACTTTGAAGAAGATGCAGATGGCGATCATGGTTTAATGAAATTGAAGGAAAGTGCAAAAAAAGAAAAGGCAGAGGATTCGGAGCTGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATG]

[-] EMBL CD190902             [ACTGACCATTTGTTATCTATTAGGATGGCTGATGTATTGGATTTACATGGAGAGAATGACTTTGAAGAAGATGCAGATGGCGATCATGGTTTAATGAAATTGAAGGAAAGTGCAAAAAAAGAAAAGGCAGAGGATTCGGAGCTGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATG]




>consensus_7825#1
ACTGACCATTTGTTATCTATTAGGATGGCTGATGTATTGGATTTACATGGAGAGAATGAC
TTTGAAGAAGATGCAGATGGCGATCATGGTTTAATGAAATTGAAGGAAAGTGCAAAAAAA
GAAAAGGCAGAGGATTCGGAGCTGACTCAGTCGGAACGACAAAAGAAGGGTATGAATCTC
TAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAGGTTGGATCT
TGTTTGTAAGGAATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7825#0      TGGTATGATTTTTAATGTTTCTAAGTCCTGTAGACTCAGTCGGAACGACAAAAGAAGGGT 60
consensus_7825#1      ------------------------------------------------------------
                                                                                  

consensus_7825#0      ATGAATCTCTAGTAGTAGATGACGGTTCGTCAAAATCAGGACCTCAAAGATCCGTAGAAG 120
consensus_7825#1      -----------------ACTGACCATTTGTTAT--------CTATTAGGATGGCTGATGT 35
                                         ****  ** ** *         *    * ***   *     

consensus_7825#0      GTTGGATCTTGTTTGTAAGGAATGTACAGGAAGAAGCTACGGAAGAAGACATTCGA--GA 178
consensus_7825#1      ATTGGAT-TTACATGGAGAGAATGACTTTGAAGAAGATGCAGATGGCGATCATGGTTTAA 94
                       ****** **   ** *  *****     ******* * * ** *  **   * *    *

consensus_7825#0      TAAATTCTGTGAATACGGCGATATCAAAAATATACACCTTAACCTTGATCGGCGAACTGG 238
consensus_7825#1      TGAAATTGAAGGAAAGTGCAA----AAAAAGAAAAGGCAGAG----GATTCG-GAGCTG- 144
                      * ** *    * * *  ** *    ***** * *   *  *     ***  * ** *** 

consensus_7825#0      TTATTTAAAAGGATATGCATTAGTAGAATATGAAAATTTCAAGGAAGCATTTACTGCTAT 298
consensus_7825#1      --ACTCAGTCGGAACGACAAAAGAAGGGTATGA--ATCTCTAGTAGTAGATGACGGTTCG 200
                        * * *   ***    **  ** **  *****  ** ** ** *     * ** * *  

consensus_7825#0      GGAACATCTAAATGGTTCTGAGCTAAATGGTCAAAGAATTCTTGTAGATTGGGCGTTTAC 358
consensus_7825#1      TCAAAATCAGGAC--CTCAAAGATCCGTAGAAGGTTGGATCTTGTTTGTAAGGAATG--- 255
                        ** ***   *    **  ** *   * *         ******   *  **  *    

consensus_7825#0      GAAAGGTCCAAATCCAATCAAGATGTCAACCAAACACAGAACACGTGAACGTAGTAGAAG 418
consensus_7825#1      ------------------------------------------------------------
                                                                                  

consensus_7825#0      TCGGTCAGTTGACCGTGCTCGACGATAATTGTACTCATCCTCTAGATGAAATATGTTTT 477
consensus_7825#1      -----------------------------------------------------------