cluster # 7860

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Schistosoma mansoni
cluster # 7860 cluster # 7860 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7860#0 length = 911 sequences # 3

consensus_7860#1 length = 644 sequences # 1
consensus_7860#2 length = 490 sequences # 1

consensusID : consensus_7860#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 911
fasta sequence

                              [AGCAACTTTGAATCATTGATACTAGTAAAGTTACCAAAGAAATACTTTCATAAAACATTGTCAGGATTAATAAACCAACCCCAGGATGAACAAAGTCGTTATCACTAGAAATCCCGTTAGGCAGATGAACATCTTTTGGTGAAGACAGTAGAGAAGTATTTATAGCTGGACAAACTCTTGGTATATCTGTATCTTCAGAAGTAAACTTTCCATACAAAAAGGATTCATACAAGGACTGAAGAAGATAGTCCATGGATTTCTTAGTAAAGGTAGAAGGGTTTTCGGAAACCAAACTATGAAGTCCTAATATAAGTTCAATACCGATAGATAAAACCCTTCGGTATGGTCCGTAGCAATATAATGACGCGCATGATACATCTCCCAAATCGGGGGATGTTTTGAATATTTGATCACGTTTTACCATAACGCTCCATGATAGTAAATTAAGATTGCTTAATTCTCTTGTAGATGGTTCTTTGGCATGTGAAACGAGACCATTCAATGTCGATAGCAGACTGTTTAAACTTTTGACAGCTTCTGATGGTACGTTCTCTGCAATTTCATGCTGATTTTCAGACATCATATAATGTTCAACTTTAACAATTGACATTACAAGCGAAGTTGCATAGACAATAGCGTTTAGAGTTAAACAACGGATATTCAACCATGATTTCAAATGGTCAAATGACAATCGAACGTTTTCAAGTTGTTCATATTGATCAAAGTTCGGTGTGACTGAAAAGTCCCGGCAATCAACAATCGTCGGAAGTTGTTTTGTAACATTATCAATACTTATTTTAGCCTGACCAAGTTGTTCAAGAAGTGTATCAAAGTCATGTTGTGAAACAATCAACTGCTAATGAAGCATTTCAATACGGACAGTTAGAAATACATCAGCATTATGAAGCTGA]

[-] EMBL CD098486             [AGCAACTTTGAATCATTGATACTAGTAAAGTTACCAAAGAAATACTTTCATAAAACATTGTCAGGATTAATAAACCAACCCCAGGATGAACAAAGTCGTTATCACTAGAAATCCCGTTAGGCAGATGAACATCTTTTGGTGAAGACAGTAGAGAAGTATTTATAGCTGGACAAACTCTTGGTATATCTGTATCTTCAGAAGTAAACTTTCCATACAAAAAGGATTCATACAAGGACTGAAGAAGATAGTCCATGGATTTCTTAGTAAAGGTAGAAGGGTTTTCGGAAACCAAACTATGAAGTCCTAATATAAGTTCAATACCGATAGATAAAACCCTTCGGTATGGTCCGTAGCAATATAATGACGCGCATGATACATCTCCCAAATCGGGGGATGTTTTGAATATTTGATCACGTTTTACCATAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD126177             [                                                                                                                                                                                  tctggTATCTGTATCTTCAGAAGTAAACTTTCCATACAAAAAGGATTCATACAAGGACTGAAGAAGATAGTCCATGGATTTCTTAGTAAAGGTAGAAGGGTTTTCGGAAACCAAACTATGAAGTCCTAATATAAGTTCAATACCGATAGATAAAACCCTTCGGTATGGTCCGTAGCAATATAATGACGCGCATGATACATCTCCCAAATCGGGGGATGTTTTGAGTATTTGATCACGTTTTACCATAACGCTCCATGATAGTAAATTAAGATTGCTTAATTCTCTTGTAGATGGTTCTTTGGCATGTGAAACGAGACCATTCAATGTCGATAGCAGACTGTTTAAACTTTTGACAGCTTCTGATGGTACGTTCT                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD114646             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GACCATTCAATGTCGATAGCAGACTGTTTAAACTTTTGACAGCTTCTGATGGTACGTTCTCTGCAATTTCATGCTGATTTTCAGACATCATATAATGTTCAACTTTAACAATTGACATTACAAGCGAAGTTGCATAGACAATAGCGTTTAGAGTTAAACAACGGATATTCAACCATGATTTCAAATGGTCAAATGACAATCGAACGTTTTCAAGTTGTTCATATTGATCAAAGTTCGGTGTGACTGAAAAGTCCCGGCAATCAACAATCGTCGGAAGTTGTTTTGTAACATTATCAATACTTATTTTAGCCTGACCAAGTTGTTCAAGAAGTGTATCAAAGTCATGTTGTGAAACAATCAACTGCTAATGAAGCATTTCAATACGGACAGTTAGAAATACATCAGCATTATGAAGCTGA]




>consensus_7860#0
AGCAACTTTGAATCATTGATACTAGTAAAGTTACCAAAGAAATACTTTCATAAAACATTG
TCAGGATTAATAAACCAACCCCAGGATGAACAAAGTCGTTATCACTAGAAATCCCGTTAG
GCAGATGAACATCTTTTGGTGAAGACAGTAGAGAAGTATTTATAGCTGGACAAACTCTTG
GTATATCTGTATCTTCAGAAGTAAACTTTCCATACAAAAAGGATTCATACAAGGACTGAA
GAAGATAGTCCATGGATTTCTTAGTAAAGGTAGAAGGGTTTTCGGAAACCAAACTATGAA
GTCCTAATATAAGTTCAATACCGATAGATAAAACCCTTCGGTATGGTCCGTAGCAATATA
ATGACGCGCATGATACATCTCCCAAATCGGGGGATGTTTTGAATATTTGATCACGTTTTA
CCATAACGCTCCATGATAGTAAATTAAGATTGCTTAATTCTCTTGTAGATGGTTCTTTGG
CATGTGAAACGAGACCATTCAATGTCGATAGCAGACTGTTTAAACTTTTGACAGCTTCTG
ATGGTACGTTCTCTGCAATTTCATGCTGATTTTCAGACATCATATAATGTTCAACTTTAA
CAATTGACATTACAAGCGAAGTTGCATAGACAATAGCGTTTAGAGTTAAACAACGGATAT
TCAACCATGATTTCAAATGGTCAAATGACAATCGAACGTTTTCAAGTTGTTCATATTGAT
CAAAGTTCGGTGTGACTGAAAAGTCCCGGCAATCAACAATCGTCGGAAGTTGTTTTGTAA
CATTATCAATACTTATTTTAGCCTGACCAAGTTGTTCAAGAAGTGTATCAAAGTCATGTT
GTGAAACAATCAACTGCTAATGAAGCATTTCAATACGGACAGTTAGAAATACATCAGCAT
TATGAAGCTGA

consensusID : consensus_7860#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [ATCGTCGGAAGTTGTTTTGTAACTAAGAGGTTATGGAAAAACAGTATAAGCAATTAGGCTCATACAAATAGAGACTTAAAAAGTGTTCATAGGAAAACCAATTGGCATGTCTAATAAGCAAGTTTTATCTGCTTACCATTATCAATACTTATTTTAGCCTGACCAAGTTGTTCAAGAAGTGTATCAAAGTCATGTTGTGAAACAATCAACTGCCAATGAAGCATTTCAATACGGACAGTTAGAAATACATCAGCATTATGAAGCTGACTGATGAATTGTGTGAATTCACGAACTTTTGTATAAGCATGTTTTCGATATGTAGCAACTAAAAACTCTTCCGCTTCCGTGACCATACTGTTGGAAAGTGTTGTAATCTTCTGATACAGACTATGTATAGAACTAGTATCGTCAACTTGTGACTGTGTAGCCACGATACTTGTACACATGGCCAATGATGGAGAGGGTTTTACAATTAAATGCCCTAGTGAAAGAAACAGCACTGTTTGATTTCAAGTTTGTCTAACTGGNGCAATATAAAGTCAGGGCAGTTAAGAAAATCTGATGAGTATAAATTACACAATTTTATGCGCAAATGATGNATAAAGATTGTATGCTCTAATCCATTACATAAATCCAGTAAACAG]

[+] EMBL CD190099             [ATCGTCGGAAGTTGTTTTGTAACTAAGAGGTTATGGAAAAACAGTATAAGCAATTAGGCTCATACAAATAGAGACTTAAAAAGTGTTCATAGGAAAACCAATTGGCATGTCTAATAAGCAAGTTTTATCTGCTTACCATTATCAATACTTATTTTAGCCTGACCAAGTTGTTCAAGAAGTGTATCAAAGTCATGTTGTGAAACAATCAACTGCCAATGAAGCATTTCAATACGGACAGTTAGAAATACATCAGCATTATGAAGCTGACTGATGAATTGTGTGAATTCACGAACTTTTGTATAAGCATGTTTTCGATATGTAGCAACTAAAAACTCTTCCGCTTCCGTGACCATACTGTTGGAAAGTGTTGTAATCTTCTGATACAGACTATGTATAGAACTAGTATCGTCAACTTGTGACTGTGTAGCCACGATACTTGTACACATGGCCAATGATGGAGAGGGTTTTACAATTAAATGCCCTAGTGAAAGAAACAGCACTGTTTGATTTCAAGTTTGTCTAACTGGNGCAATATAAAGTCAGGGCAGTTAAGAAAATCTGATGAGTATAAATTACACAATTTTATGCGCAAATGATGNATAAAGATTGTATGCTCTAATCCATTACATAAATCCAGTAAACAG]




>consensus_7860#1
ATCGTCGGAAGTTGTTTTGTAACTAAGAGGTTATGGAAAAACAGTATAAGCAATTAGGCT
CATACAAATAGAGACTTAAAAAGTGTTCATAGGAAAACCAATTGGCATGTCTAATAAGCA
AGTTTTATCTGCTTACCATTATCAATACTTATTTTAGCCTGACCAAGTTGTTCAAGAAGT
GTATCAAAGTCATGTTGTGAAACAATCAACTGCCAATGAAGCATTTCAATACGGACAGTT
AGAAATACATCAGCATTATGAAGCTGACTGATGAATTGTGTGAATTCACGAACTTTTGTA
TAAGCATGTTTTCGATATGTAGCAACTAAAAACTCTTCCGCTTCCGTGACCATACTGTTG
GAAAGTGTTGTAATCTTCTGATACAGACTATGTATAGAACTAGTATCGTCAACTTGTGAC
TGTGTAGCCACGATACTTGTACACATGGCCAATGATGGAGAGGGTTTTACAATTAAATGC
CCTAGTGAAAGAAACAGCACTGTTTGATTTCAAGTTTGTCTAACTGGNGCAATATAAAGT
CAGGGCAGTTAAGAAAATCTGATGAGTATAAATTACACAATTTTATGCGCAAATGATGNA
TAAAGATTGTATGCTCTAATCCATTACATAAATCCAGTAAACAG

consensusID : consensus_7860#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence

                              [ACGTGATATCGTAATTTCTTCAAACGTAACATTTACAAAGACTATCTTTAAACTATTTAACACAATATTCGTAAACTGAAAGACCGGTAAGGAAAAACGAGAATAGCATGATGAAATGTACAAGTCTTTTTACTGTGTGTAATATGTGAGTAATGCTGAATTTCTATCCAACGTAGATGTTTACTAAACAGTTCACATACATTAAAAATTGTTTGTGTTTACAGGGGCTAGTGGGTATCGTGGTAAAATTGTCAGTTGGCTGAACTAACCAGGATTAAACGTAACAACAAAAAAGTAACGATATGACATTCACTAAACAAAACGAACTAGTAAATTAAGATTGCTTAATTCTCTTGTAGATGGTTCTTTGGCATGTGAAACGAGACCATTCAATGTCGATAGCAGACTGTTTAAACTTTTGACAGCTTCTGATGGTACGTTCTCTGCAATTTCATGCTGATTTTCAGACATCATATAATGTTCAACTTTA]

[+] EMBL CD128309             [ACGTGATATCGTAATTTCTTCAAACGTAACATTTACAAAGACTATCTTTAAACTATTTAACACAATATTCGTAAACTGAAAGACCGGTAAGGAAAAACGAGAATAGCATGATGAAATGTACAAGTCTTTTTACTGTGTGTAATATGTGAGTAATGCTGAATTTCTATCCAACGTAGATGTTTACTAAACAGTTCACATACATTAAAAATTGTTTGTGTTTACAGGGGCTAGTGGGTATCGTGGTAAAATTGTCAGTTGGCTGAACTAACCAGGATTAAACGTAACAACAAAAAAGTAACGATATGACATTCACTAAACAAAACGAACTAGTAAATTAAGATTGCTTAATTCTCTTGTAGATGGTTCTTTGGCATGTGAAACGAGACCATTCAATGTCGATAGCAGACTGTTTAAACTTTTGACAGCTTCTGATGGTACGTTCTCTGCAATTTCATGCTGATTTTCAGACATCATATAATGTTCAACTTTA]




>consensus_7860#2
ACGTGATATCGTAATTTCTTCAAACGTAACATTTACAAAGACTATCTTTAAACTATTTAA
CACAATATTCGTAAACTGAAAGACCGGTAAGGAAAAACGAGAATAGCATGATGAAATGTA
CAAGTCTTTTTACTGTGTGTAATATGTGAGTAATGCTGAATTTCTATCCAACGTAGATGT
TTACTAAACAGTTCACATACATTAAAAATTGTTTGTGTTTACAGGGGCTAGTGGGTATCG
TGGTAAAATTGTCAGTTGGCTGAACTAACCAGGATTAAACGTAACAACAAAAAAGTAACG
ATATGACATTCACTAAACAAAACGAACTAGTAAATTAAGATTGCTTAATTCTCTTGTAGA
TGGTTCTTTGGCATGTGAAACGAGACCATTCAATGTCGATAGCAGACTGTTTAAACTTTT
GACAGCTTCTGATGGTACGTTCTCTGCAATTTCATGCTGATTTTCAGACATCATATAATG
TTCAACTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7860#0      AGCAACTTTGAATCATTGATACTAGTAAAGTTACCAAAGAAATACTTTCATAAAACATTG 60
consensus_7860#2      ------------------------------------------------------------
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      TCAGGATTAATAAACCAACCCCAGGATGAACAAAGTCGTTATCACTAGAAATCCCGTTAG 120
consensus_7860#2      ---------------------------ACGTGATATCGTAATTTCTTCAAA---CGTAAC 30
consensus_7860#1      ----------------------------------------ATCGTCGGAAGT--TGTTTT 18
                                                              **      **     **   

consensus_7860#0      GCAGATGAACATCTTTTGGTGAAGACAGTAGAGAAGTATTTATAGCTGGACAAACTCTT- 179
consensus_7860#2      ATTTACAAAGA-CTATCTTTAAACTATTTAACACAATATTCGTAAACTGAAAGACCGGTA 89
consensus_7860#1      GTAACTAAGAGGTTATGGAAAAACAGTATAAGCAATTAGGCTCATACAAATAGAGACTTA 78
                             *     * *     **     **    * **     *     * * *    * 

consensus_7860#0      -GGTATATCTGTATCTTCAGAAGTAAACTTTCCATACAAAAAGGATTCATACAAGGACTG 238
consensus_7860#2      AGGAAAAACGAGAATAGCATGATGAAAT-----GTACAAGTCTTTTTACTGTGTGTAAT- 143
consensus_7860#1      AAAAGTGTTCATAGGAAAACCAATTGGCATGTCTAATAAGCAAGTTTTATCTGCTTACCA 138
                                  *     *  *             * **      **  *      *   

consensus_7860#0      AAGAAGATAGTCCAT-----------GGATTTCTTAGTAAAGGTAGAAGGGTTTTCGGAA 287
consensus_7860#2      ATGTGAGTAATGC-T-----------GAATTTCT-ATCCAACGTAGATG---TTT----- 182
consensus_7860#1      TTATCAATACTTATTTTAGCCTGACCAAGTTGTTCAAGAAGTGTATCAAAGTCAT--GTT 196
                             ** *   *              **  * *   *  ***         *     

consensus_7860#0      ACCAAACTATGAAGTCCTAATATA--AGTTCAATACCGATAGAT-AAAACCCTTCGGTAT 344
consensus_7860#2      ACTAAACAGTTCACATACATTAAA--AATTGTTTGTGTTTACA--GGGGCTAGTGGGTAT 238
consensus_7860#1      GTGAAACAATCAACTGCCAATGAAGCATTTCAATACGGACAGTTAGAAATACATCAGCAT 256
                         ****  *  *     * *  *  * **   *      *            *  * **

consensus_7860#0      GGTCCGTAGCAATATAATGACGCGCATGATACATCT--CCCAAATCGGGGGATGTTTTGA 402
consensus_7860#2      ----CGTGGTAAAATTGTCAGTTGGCTGAACTAAC----CAGGATTAAACGTAACAACAA 290
consensus_7860#1      --TATGAAGCTGACTGATGAATTGTGTGAATTCACGAACTTTTGTATAAGCATGTTTTCG 314
                           *  *     *  * *   *  ***     *         *               

consensus_7860#0      ATATTTGATCACGT----TTTACCATAACGCTCCATGATAGTAAATTAAGATTGCTTAAT 458
consensus_7860#2      AAAAGTAACGATATGACATTCACTA-AACAAAACGAACTAGTAAATTAAGATTGCTTAAT 349
consensus_7860#1      ATATGTAGCAACTAAAAACTCTTCCGCTTCCGTGACCATACTGTTGGAAAGTGTTGTAAT 374
                      * *  *    *        *                  ** *     **  *    ****

consensus_7860#0      TCTCTTGTAGATGGT-TCTTTGGCATGTGAAACGAGACCATTCAATGTCGATAGCAGACT 517
consensus_7860#2      TCTCTTGTAGATGGT-TCTTTGGCATGTGAAACGAGACCATTCAATGTCGATAGCAGACT 408
consensus_7860#1      CTTCTGATACAGACTATGTATAGAACTAGTATCGTCAACTTGTGACTGTGTAGCCACGAT 434
                        ***  ** *   * * * * * *   * * **  * * *   *    *    **   *

consensus_7860#0      GTTTAAACTTTTGACAGCTTCTGATGGTACGTTCTCTGCAATTTCATGCTGATTTTCAGA 577
consensus_7860#2      GTTTAAACTTTTGACAGCTTCTGATGGTACGTTCTCTGCAATTTCATGCTGATTTTCAGA 468
consensus_7860#1      ACTTGTACACATG---GCCAATGATGGAGAGGGTTTTACAATTAAATGCCCTAGTGAAAG 491
                        **  **   **   **   ******   *   * * *****  ****     *  *  

consensus_7860#0      CATCATATAATGTTCAACTTTAACAATTGACATTACAAGCGAAGTTGCATAGACAATAGC 637
consensus_7860#2      CATCATATAATGTTCAACTTTA-------------------------------------- 490
consensus_7860#1      AAACA-GCACTGTTTGATTTCA--AGTTTGTCTAACTGGNGCAAT-ATAAAGTCAG-GGC 546
                       * **   * ****  * ** *                                      

consensus_7860#0      GTTTAGAGTTAAACAACGGATATTCAACCATGATTTCAAATGGTCAAATGACAATCGAAC 697
consensus_7860#2      ------------------------------------------------------------
consensus_7860#1      AGTTAAGAAAATCTGATGAGTATA-AATTACACAATTTTATGCGCAAATGATGNATAAAG 605
                                                                                  

consensus_7860#0      GTTTTCAAGTTGTTCATATTGATCAAAGTTCGGTGTGACTGAAAAGTCCCGGCAATCAAC 757
consensus_7860#2      ------------------------------------------------------------
consensus_7860#1      ATTGT-ATGCTCTAATCCATTACATAAATCCAGTA-AACAG------------------- 644
                                                                                  

consensus_7860#0      AATCGTCGGAAGTTGTTTTGTAACATTATCAATACTTATTTTAGCCTGACCAAGTTGTTC 817
consensus_7860#2      ------------------------------------------------------------
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      AAGAAGTGTATCAAAGTCATGTTGTGAAACAATCAACTGCTAATGAAGCATTTCAATACG 877
consensus_7860#2      ------------------------------------------------------------
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      GACAGTTAGAAATACATCAGCATTATGAAGCTGA 911
consensus_7860#2      ----------------------------------
consensus_7860#1      ----------------------------------