cluster # 7868

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Schistosoma mansoni
cluster # 7868 cluster # 7868 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7868#0 length = 731 sequences # 2

consensus_7868#1 length = 594 sequences # 2
consensus_7868#2 length = 501 sequences # 1

consensusID : consensus_7868#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 731
fasta sequence

                              [AAGTTCACGAAAAGGACTATACAAACAGAAGTAGTTCACTTCATTCTCCTCGAGAGAAGATTGATAAAGAATCACTAGTTGTCAAATCGAATGCTCCCGGTAATACCAACATTCAAGCAGTTAATGTGGAATGTACAGACTCTGTAGATCGGAGTTCATCATCACATACTGCCTGTTCCATCAGGACGAAAGCACAAGAGTTATTTATAACAGATAATAAATCTGATTCCCAGGCACTCCCTACGAATCATCAAAAGATTAATAATTTTATAAATAAAACTATAAACCCTTCGCAACTTAGGCTAACACCCGCTGCACTTAATCTCCAGTTAGCCGTTGAAATGAATTATCTTGAAACGCTCTCTGGTTCAATGCAACATATTGCTGATATGGAATCTCTTCGTCAGATTACCGCTGCTCAAGCTGAATGTGTTAGCCTTGCACAGTTGCTTAAAGCTCGTGAATTGCAGATATCATCGAAGATTAGTGATCATGCGTTGGAGAAAGAAACACCAGGTGTATTTGTCAGCCCTAATGAACCAGGTCGTCTGATTTCTGGCGTACATTCACCACAGTTTGAAAGCGTACTAAAAGCTGCTGAAGAATTTGATAAGGTCGAACGTCGTCTTAGTGTAAGGACTTCACACTTGGATGCCATTTCTTACTGTTCTACCGAATCACCATCTGTCGACTCAAATATCACAAATGAAGCAAATGTTCACAAATCTTTA]

[+] EMBL AI977282             [AAGTTCACGAAAAGGACTATACAAACAGAAGTAGTTCACTTCATTCTCCTCGAGAGAAGATTGATAAAGAATCACTAGTTGTCAAATCGAATGCTCCCGGTAATACCAACATTCAAGCAGTTAATGTGGAATGTACAGACTCTGTAGATCGGAGTTCATCATCACATACTGCCTGTTCCATCAGGACGAAAGCACAAGAGTTATTTATAACAGATAATAAATCTGATTCCCAGGCACTCCCTACGAATCATCAAAAGATTAATAATTTTATAAATAAAACTATAAACCCTTCGCAACTTAGGCTAACACCCGCTGCACTTAATCTCCAGTTAGCCGTTGAAATGAATTATCTTGAAACGCTCTCTGGTTCAATGCAACATATTGCTGATATGG                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BF936257             [                                                                                                                                                                                        GACGAAAGCACAAGAGTTATTTATAACAGATAATAAATCTGATTCCCAGGCACTCCCTACGAATCATCAAAAGATTAATAATTTTATAAATAAAACTATAAACCCTTCGCAACTTAGGCTAACACCCGCTGCACTTAATCTCCAGTTAGCCGTTGAAATGAATTATCTTGAAACGCTCTCTGGTTCAATGCAACATATTGCTGATATGGAATCTCTTCGTCAGATTACCGCTGCTCAAGCTGAATGTGTTAGCCTTGCACAGTTGCTTAAAGCTCGTGAATTGCAGATATCATCGAAGATTAGTGATCATGCGTTGGAGAAAGAAACACCAGGTGTATTTGTCAGCCCTAATGAACCAGGTCGTCTGATTTCTGGCGTACATTCACCACAGTTTGAAAGCGTACTAAAAGCTGCTGAAGAATTTGATAAGGTCGAACGTCGTCTTAGTGTAAGGACTTCACACTTGGATGCCATTTCTTACTGTTCTACCGAATCACCATCTGTCGACTCAAATATCACAAATGAAGCAAATGTTCACAAATCTTTA]




>consensus_7868#0
AAGTTCACGAAAAGGACTATACAAACAGAAGTAGTTCACTTCATTCTCCTCGAGAGAAGA
TTGATAAAGAATCACTAGTTGTCAAATCGAATGCTCCCGGTAATACCAACATTCAAGCAG
TTAATGTGGAATGTACAGACTCTGTAGATCGGAGTTCATCATCACATACTGCCTGTTCCA
TCAGGACGAAAGCACAAGAGTTATTTATAACAGATAATAAATCTGATTCCCAGGCACTCC
CTACGAATCATCAAAAGATTAATAATTTTATAAATAAAACTATAAACCCTTCGCAACTTA
GGCTAACACCCGCTGCACTTAATCTCCAGTTAGCCGTTGAAATGAATTATCTTGAAACGC
TCTCTGGTTCAATGCAACATATTGCTGATATGGAATCTCTTCGTCAGATTACCGCTGCTC
AAGCTGAATGTGTTAGCCTTGCACAGTTGCTTAAAGCTCGTGAATTGCAGATATCATCGA
AGATTAGTGATCATGCGTTGGAGAAAGAAACACCAGGTGTATTTGTCAGCCCTAATGAAC
CAGGTCGTCTGATTTCTGGCGTACATTCACCACAGTTTGAAAGCGTACTAAAAGCTGCTG
AAGAATTTGATAAGGTCGAACGTCGTCTTAGTGTAAGGACTTCACACTTGGATGCCATTT
CTTACTGTTCTACCGAATCACCATCTGTCGACTCAAATATCACAAATGAAGCAAATGTTC
ACAAATCTTTA

consensusID : consensus_7868#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 594
fasta sequence

                              [CATTGTCCGAGCAGTAGAACATTCAGAAGCAGTATTTGAGTTGATTATATTGCATTTTAACAAGCTAGAACTTTTGCCCAATGAAGCTGTAGGAATTCGCTCAGAATTAGTTTTGTCATCACCGGGCTCTTCTAAACCAAGTTCATCACTATATTGTGAATAACTGGAACGTTGACAAACCGGTAAGTGAGAATTCGATCTCCAATGTTTAGAGTTGCTATTCTTCGACCAATGACTAGGTGTTGAATATTTCTTTGATTCATTATCATTTGATAACTGGGACCGATTTTCATGCAAAGCTAAACGTTTACTTTGGATTGCGTTCAATGCTTCACGTTCTAAGCGAACAACTTCGACCTCTTCGAGTTCAATATTCTTAGAAAGCGCTAAAAGCTCTTCAGCTTTCTTACGCCTAGATTGTAAAGCCGGTGTGGTTTCAACTCCAATATCAAGTTTTGGAAGACAATAATTTGAAACTTTGGAAACTCGACTGTTATAATCATCATTTTCAGTGCTTAGTAAATTTGGTGTACACTTCTCATTGTATCGATTTGGTATTAACTTATAATTATTGCCAAAAGAAGTGTTGGAATG]

[+] EMBL CD195436             [CATTGTCCGAGCAGTAGAACATTCAGAAGCAGTATTTGAGTTGATTATATTGCATTTTAACAAGCTAGAACTTTTGCCCAATGAAGCTGTAGGAATTCGCTCAGAATTAGTTTTGTCATCACCGGGCTCTTCTAAACCAAGTTCATCACTATATTGTGAATAACTGGAACGTTGACAAACCGGTAAGTGAGAATTCGATCTCCAATGTTTAGAGTTGCTATTCTTCGACCAATGACTAGGTGTTGAATATTTCTTTGATTCATTATCATTTGATAACTGGGACCGATTTTCATGCAAAGCTAAACGTTTACTTTGGATTGCGTTCAATGCTTCACGTTCTAAGCG                                                                                                                                                                                                                                                         ]
[+] EMBL CD116038             [            AGTAGAACATTCAGAAGCAGTATTTGAGTTGATTATATTGCATTTTAACAAGCTAGAACTTTTGCCCAATGAAGCTGTAGGAATTCGCTCAGAATTAGTTTTGTCATCACCGGGCTCTTCTAAACCAAGTTCATCACTATATTGTGAATAACTGGAACGTTGACAAACCGGTAAGTGAGAATTCGATCTCCAATGTTTAGAGTTGCTATTCTTCGACCAATGACTAGGTGTTGAATATTTTTTTGATTCATTATCATTTGATAACTAGGACCGATTTTCATGCAAAGCTAAACGTTTACTTTGGATTGCGTTCAATGCTTCACGTTCTAAGCGAACAACTTCGACCTCTTCGAGTTCAATATTCTTAGAAAGCGCTAAAAGCTCTTCAGCTTTCTTACGCCTAGATTGTAAAGCCGGTGTGGTTTCAACTCCAATATCAAGTTTTGGAAGACAATAATTTGAAACTTTGGAAACTCGACTGTTATAATCATCATTTTCAGTGCTTAGTAAATTTGGTGTACACTTCTCATTGTATCGATTTGGTATTAACTTATAATTATTGCCAAAAGAAGTGTTGGAATG]




>consensus_7868#1
CATTGTCCGAGCAGTAGAACATTCAGAAGCAGTATTTGAGTTGATTATATTGCATTTTAA
CAAGCTAGAACTTTTGCCCAATGAAGCTGTAGGAATTCGCTCAGAATTAGTTTTGTCATC
ACCGGGCTCTTCTAAACCAAGTTCATCACTATATTGTGAATAACTGGAACGTTGACAAAC
CGGTAAGTGAGAATTCGATCTCCAATGTTTAGAGTTGCTATTCTTCGACCAATGACTAGG
TGTTGAATATTTCTTTGATTCATTATCATTTGATAACTGGGACCGATTTTCATGCAAAGC
TAAACGTTTACTTTGGATTGCGTTCAATGCTTCACGTTCTAAGCGAACAACTTCGACCTC
TTCGAGTTCAATATTCTTAGAAAGCGCTAAAAGCTCTTCAGCTTTCTTACGCCTAGATTG
TAAAGCCGGTGTGGTTTCAACTCCAATATCAAGTTTTGGAAGACAATAATTTGAAACTTT
GGAAACTCGACTGTTATAATCATCATTTTCAGTGCTTAGTAAATTTGGTGTACACTTCTC
ATTGTATCGATTTGGTATTAACTTATAATTATTGCCAAAAGAAGTGTTGGAATG

consensusID : consensus_7868#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [GCTCAGAATTAGTTNTGTCATCACCGGGCTCTTCTAAACCAAGTTCATCACTATATTGTGAATAACTGGAACGTTGACAAACCGGTAAGTGAGAATTCGATCTCCAATGTTTAGAGTTGCTATTCTTCGACCAATGACTAGGTGTTGAATATTTTTTTGATTCATTATCATTTGATAACTGGGACCGATTTTCATGCAAAGCTAAACGTTTACTTTGGATTGCGTTCAATGCTTCACGTTCTAAGCGAACAACTTCGACCTCTTCGAGTTCAATATTCTTAGAAAGCGCTAAAAGCTGCTGAAGAATTTGATAAGGTCGAACGTCGTCTTAGTGTAAGGACTTCACACTTGGATGCCATTTCTTACTGTTCTACCGAATCACCATCTGTCGACTCAAATATCACAAATGAAGCAAATGTTCATAAATCTTTAAATGGATCTATTTCAGAATCCAGTGTAAACAAACAACAATTTTCCACAGGAAGCGATAAAACACTTTCA]

[-] EMBL CD115205             [GCTCAGAATTAGTTNTGTCATCACCGGGCTCTTCTAAACCAAGTTCATCACTATATTGTGAATAACTGGAACGTTGACAAACCGGTAAGTGAGAATTCGATCTCCAATGTTTAGAGTTGCTATTCTTCGACCAATGACTAGGTGTTGAATATTTTTTTGATTCATTATCATTTGATAACTGGGACCGATTTTCATGCAAAGCTAAACGTTTACTTTGGATTGCGTTCAATGCTTCACGTTCTAAGCGAACAACTTCGACCTCTTCGAGTTCAATATTCTTAGAAAGCGCTAAAAGCTGCTGAAGAATTTGATAAGGTCGAACGTCGTCTTAGTGTAAGGACTTCACACTTGGATGCCATTTCTTACTGTTCTACCGAATCACCATCTGTCGACTCAAATATCACAAATGAAGCAAATGTTCATAAATCTTTAAATGGATCTATTTCAGAATCCAGTGTAAACAAACAACAATTTTCCACAGGAAGCGATAAAACACTTTCA]




>consensus_7868#2
GCTCAGAATTAGTTNTGTCATCACCGGGCTCTTCTAAACCAAGTTCATCACTATATTGTG
AATAACTGGAACGTTGACAAACCGGTAAGTGAGAATTCGATCTCCAATGTTTAGAGTTGC
TATTCTTCGACCAATGACTAGGTGTTGAATATTTTTTTGATTCATTATCATTTGATAACT
GGGACCGATTTTCATGCAAAGCTAAACGTTTACTTTGGATTGCGTTCAATGCTTCACGTT
CTAAGCGAACAACTTCGACCTCTTCGAGTTCAATATTCTTAGAAAGCGCTAAAAGCTGCT
GAAGAATTTGATAAGGTCGAACGTCGTCTTAGTGTAAGGACTTCACACTTGGATGCCATT
TCTTACTGTTCTACCGAATCACCATCTGTCGACTCAAATATCACAAATGAAGCAAATGTT
CATAAATCTTTAAATGGATCTATTTCAGAATCCAGTGTAAACAAACAACAATTTTCCACA
GGAAGCGATAAAACACTTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7868#1      ------------------------------------------------------------
consensus_7868#2      ------------------------------------------------------------
consensus_7868#0      AAGTTCACGAAAAGGACTATACAAACAGAAGTAGTTCACTTCATTCTCCTCGAGAGAAGA 60
                                                                                  

consensus_7868#1      ----------------------------------------------CATTGTCCGAGCAG 14
consensus_7868#2      ------------------------------------------------------------
consensus_7868#0      TTGATAAAGAATCACTAGTTGTCAAATCGAATGCTCCCGGTAATACCAACATTCAAGCAG 120
                                                                                  

consensus_7868#1      TAGAACATTCAGAAGCAGTATTTGAGTTGATTATATTGCATTTTAACAAGCTAGAACTTT 74
consensus_7868#2      ------------------------------------------------------------
consensus_7868#0      TTAATGTGGAATGTACAGACTCT--GTAGATCGGAGTTCATCATCACATACTGCCTGTTC 178
                                                                                  

consensus_7868#1      TGCCCA-ATGAAGCTGTAGGAATTCGCTCAGAATTAGTTTTG----TCATCACCGGGCTC 129
consensus_7868#2      -------------------------GCTCAGAATTAGTTNTG----TCATCACCGGGCTC 31
consensus_7868#0      CATCAGGACGAAAGCACAAGAGTT-ATTTATAACAGATAATAAATCTGATTCCCAGGCAC 237
                                                 * * **    *  *     * **  ** *** *

consensus_7868#1      TTCTAAACCAAGTTCATCACTATATTG--TGAATAACTGGAACGTTGACAAACCGGTAAG 187
consensus_7868#2      TTCTAAACCAAGTTCATCACTATATTG--TGAATAACTGGAACGTTGACAAACCGGTAAG 89
consensus_7868#0      TCCCTACGAATCATCAAAAGATTAATAATTTTATAAATAAAACTATAAACCCTTCGCAAC 297
                      * *  *   *   ***  *   ** *   *  **** *  ***  * *       * ** 

consensus_7868#1      TGAGAATTCGATCTCCAATGTTTAGAGTT--GCTATTCTTCGACCAATGACTAGGTGTTG 245
consensus_7868#2      TGAGAATTCGATCTCCAATGTTTAGAGTT--GCTATTCTTCGACCAATGACTAGGTGTTG 147
consensus_7868#0      TTAGGCTAACACCCGCTGCACTTAATCTCCAGTTAGCCGTTGA--AATGAATTA-TCTTG 354
                      * **  *   * *  *     ***   *   * **  * * **  ***** *   * ***

consensus_7868#1      AATATTTCTTTGATTCATTATCATTTGATAACTGGGACCGATTTTCATGCAAAGCTAAAC 305
consensus_7868#2      AATATTTTTTTGATTCATTATCATTTGATAACTGGGACCGATTTTCATGCAAAGCTAAAC 207
consensus_7868#0      AAACGCTCTCTGGTTCAATGCAACAT-ATTGCTGATATGGAATCTCTTCGTCAGATTACC 413
                      **    * * ** **** *   *  * **  ***  *  ** * ** *    ** * * *

consensus_7868#1      GTTTACTTTG--GATTGCGTTCAATGCTTCAC----GTTCTAAGCGAACAACTTC--GAC 357
consensus_7868#2      GTTTACTTTG--GATTGCGTTCAATGCTTCAC----GTTCTAAGCGAACAACTTC--GAC 259
consensus_7868#0      GCTGCTCAAGCTGAATGTGTT-AGCCTTGCACAGTTGCTTAAAGCTCGTGAATTGCAGAT 472
                      * *      *  ** ** *** *    * ***    * *  ****     * **   ** 

consensus_7868#1      CTCTTCGA-GTTCAATATTCTTA-GAAAGCGCTAAAAGCTCTTCAGCTTTCTTACGCC-T 414
consensus_7868#2      CTCTTCGA-GTTCAATATTCTTA-GAAAGCGCTAAAAGCTGCTGAAGAATTTGATAAGGT 317
consensus_7868#0      ATCATCGAAGATTAGTGATCATGCGTTGGAGAAAGAAACACCAGGTGTATTTGTCAGCCC 532
                       ** **** * * * *  ** *  *   * *  * ** *          * *        

consensus_7868#1      AGATTGTAAAGCCGGTGT---GGTTTCA-ACTCCAAT--ATCAAGTTTTGGAAGACAATA 468
consensus_7868#2      CGAACGTCGTCTTAGTGTAAGGACTTCACACTTGGAT--GCCATTTCTTACTGTTCTACC 375
consensus_7868#0      TAATGAACCAGGTCGTCT---GATTTCTGGCGTACATTCACCACAGTTTGAAAGCGTACT 589
                        *           ** *   *  ***   *    **    **    **        *  

consensus_7868#1      ATTTGAAACTTTGGAAACTCGACTGTTATAATCATCATTTTCAGTGCTTAG----TAAAT 524
consensus_7868#2      GAATCACCATCTGTCGACTCAAATATCACAAATGAAGCA---AATGTTCAT----AAATC 428
consensus_7868#0      AAAAGCTGCTGAAG-AATTTGATAAGGTCGAACGTCGTCTT-AGTGTAAGGACTTCACAC 647
                               *      * *  *        *           * **          *   

consensus_7868#1      TTGGTGTACACTTCTCATTGT---ATCGATTTG----GTATTAACTTATAATTATTG-CC 576
consensus_7868#2      TTTAAATGGATCTATTTCAGA---ATCCA--------GTGTAAACAAACAACAATTTTCC 477
consensus_7868#0      TTGGATGCCATTTCTTACTGTTCTACCGAATCACCATCTGTCGACTCAAATATCACAAAT 707
                      **       *  * *    *    * * *         * *  **  * *          

consensus_7868#1      AAAAGAAGTGTTGGAATG------ 594
consensus_7868#2      ACAGGAAGCGATAAAACACTTTCA 501
consensus_7868#0      GAAGCAAATGTTCACAAATCTTTA 731
                        *  **  * *   *