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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7878#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 985 fasta sequence
[AGGTTAATACAGACTTGTCTAAGTTCATCTGTGAATTCAAACAATTCATCGATAAGAAGTGATCAGCCAGATTTAAGCAGTTCGCAAGTTAATAAAAATGT-AATTGTCGGAGAATTTGCAAGAAGGAAGATGGTACAGTCATTGTTAACACTGATACATGTAGTAAAAAGGATTACTTTAGTGATTTAAAAAATATATCCAATAAAGACAGTAAAGTGAACTCAATGTTACAAAATGACACAGTTCCTACATTGTCAAATCAAAATCATGTTGATGAATTGGAGCATCGTATTGGTATCATCCCAAAAACAACCATAGATTCTGGTCAAAATGGTCGTACTGTATCGTTTTGTAATAATATTTCTCAGGTAACTAACATTTCCAACTCATCTGAATGTTAAAAAGTGGTATATGTTCCAGTTAGTGTATCTCCTTCATCACAAAATGTTCTCTCATTAAATCCGTTATCCCCTAGCCTTCTTCTAACCGCACAAATGGCCACAAATCAATTACTTTTAGTTCCACAGTTAAATTCAATTCCTTATGTTACATCATCTTCAGGAAATGTATCAAATAGCTCACTAAACACACCAATGTCAAACTCGTATAATCCTTATTTAAATGGGG-TTTTAAATGTCAGTACAAACAATGGTTCGTCAGAAATACTTACAAATTGTGTAACAAAAGAATCAAGTGACTTTCCCTCCCAAAGTTCTACTAATGAAAGCGTAACTAATCAAGTTATGAATAATTCATGTAAATATAACTTGAAACCTCCAGATTAAATCAATGCTTATTCGACCGACCCCTCTATTCCTCTTTGTTCTCTGGAAACAAAATGCTTTTCTTTAGTTCATAATTTATTTTACTCCCTCGATTTTGTTTATCTTTTCCAAATTATCTAGAGTATTAAATATTATTTTGAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAATCCATGCAGCTGCATTACCGTACTGCGTA]
[+] EMBL CD084403 [AGGTTAATACAGACTTGTCTAAGTTCATCTGTGAATTCAAACAATTCATCGATAAGAAGTGATCAGCCAGATTTAAGCAGTTCGCAAGTTAATAAAAATGT AATTGTCGGAGAATTTGCAAGAAGGAAGATGGTACAGTCATTGTTAACACTGATACATGTAGTAAAAAGGATTACTTTAGTGATTTAAAAAATATATCCAATAAAGACAGTAAAGTGAACTCAATGTTACAAAATGACACAGTTCCTACATTGTCAAATCAAAATCATGTTGATGAATTGGAGCATCGTATTGGTATCATCCCAAAAACAACCATAGATTCTGGTCAAAATGGTCGTACTGTATCGTTTTGTAATAATATTTCTCAGGTAACTAACATTTCCAACTCATCTGAATGTTAAAAAGTGGTATATGTTCCAGTTAGTGTATCTCCTTCATCACAAAATGTTCTCTCATTAAATCC ]
[+] EMBL CD078536 [ GATCAGCCAGATTTAAGCAGTTCGCAAGTTAATAAAAATGTAAATTGTCGGAGAATTTGCAAGAAGGAAGATGGTACAGTCATTGTTAACACTGATACATGTAGTAAAAAGGATTACTTTAGTGATTTAAAAAATATATCCAATAAAGACAGTAAAGTGAACTCAATGTTACAAAATGACACAGTTCCTACATTGTCAAATCAAAATCATGTTGATGAATTGGAGCATCGTATTGGTATCATCCCAAAAACAACCATAGATTCTGGTCAAAATGGTCGTACTGTATCGTTTTGTAATAATATTTCTCAGGTAACTAACATTTCCAACTCATCTGAATGTAAAAAAGTGGTATATGTTCCAGTTAGTGTATCTCCTTCATCACAAAATGTTCTCTCATTAACTCCGTTATCCCCTAGCCTTCTTCTAACCGCACAAATGGCCACAAATCAATTACTTTTAGTTCCACAGTTAAATTCAATTCCTTATGTTACATCATCTTCAGGAAATGTATCAAATAGCTCACTAAACACACCAATGTCAAACTCGTATAATCCTTATTTAAATGGGG TTTTAAATGTCAGTACAAACAATGGTTCGTCAGAAA ]
[-] EMBL AI976283 [ ACTTTTAGTTCCACAGTTAAATTCAATTCCTTACGTTACATCATCTTCAGGAAATGTATCAAATAGCTCACTAAACACACCAATGTCAAACTCGTATAATCCTTATTT AATGGGGTTTTTAAATGTCAGTACAAACAATGGTTCGTCAGAAATACTTACAAATTGTGTAACAAAAGAATCAAGTGACTTTCCCTCCCAAAGTTCTACTAATGAAAGCGTAACTAATCAAGTTATGAATAATTCATGTAAATATAACTTGAAACCTCCAGATTAAATCAATGCTTATTCGACCGACCCCTCTATTCCTCTTTGTTCTCTGGAAACAAAATGCTTTTCTTTAGTTCATAATTTATTTTACTCCCTCGATTTTGTTTATCTTTTCCAAATTATCTAGAGTATTAAATATTATTTTGAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAATCCATGCAGCTGCATTACCGTACTGCGTA]
consensusID : consensus_7878#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence
[CAATGTCAAACTCGTATAATCCTTATTTAATGGGGTTTTTAAATGTCAGTACAAACAATGGTTCGTCAGAAATACTTACAAATTGTGTAACAAAAGAATCAAGTGACTTTCCCTCCCAAAGTTCTACTAATGAAAGCGTAACTAATCAAGTTATGAATAATTCATGTAAATATAACTTGAACCCTCCAGATTAAATCAATGCTTATTCGACCGACCCCTCTATTCCTCTTTGTTCTCTGGAAACAAAATGCTTTTCTTTAGTTCATAATTTATTTTACTCCCTCGATTTTGTTTATCTTTTCCAAATTATCTAGAGTATTAAATATTATTTTGAAAACAACTTAGTTGTTTTCTAAAGTTATTTAACAATTTTGTAACGAAGCTTTTCCAATAATGTACTTAAATGTTACCATTTTTCCAATTATTTGAAAGTACTCAAATTTATAGCTTTTAGCACTTGGAAGCTTTGAAAATAGTTTTCGTTAAAAAGTGATAACAACTAATAAACTTCTGAGAGCAC]
[-] EMBL CD073003 [CAATGTCAAACTCGTATAATCCTTATTTAATGGGGTTTTTAAATGTCAGTACAAACAATGGTTCGTCAGAAATACTTACAAATTGTGTAACAAAAGAATCAAGTGACTTTCCCTCCCAAAGTTCTACTAATGAAAGCGTAACTAATCAAGTTATGAATAATTCATGTAAATATAACTTGAACCCTCCAGATTAAATCAATGCTTATTCGACCGACCCCTCTATTCCTCTTTGTTCTCTGGAAACAAAATGCTTTTCTTTAGTTCATAATTTATTTTACTCCCTCGATTTTGTTTATCTTTTCCAAATTATCTAGAGTATTAAATATTATTTTGAAAACAACTTAGTTGTTTTCTAAAGTTATTTAACAATTTTGTAACGAAGCTTTTCCAATAATGTACTTAAATGTTACCATTTTTCCAATTATTTGAAAGTACTCAAATTTATAGCTTTTAGCACTTGGAAGCTTTGAAAATAGTTTTCGTTAAAAAGTGATAACAACTAATAAACT ]
[-] EMBL AI067763 [ CCAAAGTTCTACTAATGAAAGCGTAACTAATCAAGTTATGAATAATTCATGTAAATATAACTTGAAACCTCCAGATTAAATCAATGCTTATTCGACCGACCCCTCTATTCCTCTTTGTTCTCTGGAAACAAAATGCTTTTCTTTAGTTCATAATTTATTTTACTCCCTCGATTTTGTTTATCTTTTCCAAATTATCTAGAGTATTAAATATTATTTTGAAAACAACTTAGTTGTTTTCTAAAGTTATTTAACAATTTTGTAACGAAGCTTTTACAATAATGTACTTAAATGTTACCATTTTTCCAATTATTTGAAAGTACTCAAATTTATAGCTTTTAGCACTTGGAAGCTTTGAAAATAGTTTTCGTTAAAAAGTGATAACAACTAATAAACTTCTGAGAGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7878#0 AGGTTAATACAGACTTGTCTAAGTTCATCTGTGAATTCAAACAATTCATCGATAAGAAGT 60
consensus_7878#1 ------------------------------------------------------------
consensus_7878#0 GATCAGCCAGATTTAAGCAGTTCGCAAGTTAATAAAAATGTAATTGTCGGAGAATTTGCA 120
consensus_7878#1 ------------------------------------------------------------
consensus_7878#0 AGAAGGAAGATGGTACAGTCATTGTTAACACTGATACATGTAGTAAAAAGGATTACTTTA 180
consensus_7878#1 ------------------------------------------------------------
consensus_7878#0 GTGATTTAAAAAATATATCCAATAAAGACAGTAAAGTGAACTCAATGTTACAAAATGACA 240
consensus_7878#1 ------------------------------------------------------------
consensus_7878#0 CAGTTCCTACATTGTCAAATCAAAATCATGTTGATGAATTGGAGCATCGTATTGGTATCA 300
consensus_7878#1 ------------------------------------------------------------
consensus_7878#0 TCCCAAAAACAACCATAGATTCTGGTCAAAATGGTCGTACTGTATCGTTTTGTAATAATA 360
consensus_7878#1 ------------------------------------------------------------
consensus_7878#0 TTTCTCAGGTAACTAACATTTCCAACTCATCTGAATGTTAAAAAGTGGTATATGTTCCAG 420
consensus_7878#1 ------------------------------------------------------------
consensus_7878#0 TTAGTGTATCTCCTTCATCACAAAATGTTCTCTCATTAAATCCGTTATCCCCTAGCCTTC 480
consensus_7878#1 ------------------------------------------------------------
consensus_7878#0 TTCTAACCGCACAAATGGCCACAAATCAATTACTTTTAGTTCCACAGTTAAATTCAATTC 540
consensus_7878#1 ------------------------------------------------------------
consensus_7878#0 CTTATGTTACATCATCTTCAGGAAATGTATCAAATAGCTCACTAAACACACCAATGTCAA 600
consensus_7878#1 ---------------------------------------------------CAATGTCAA 9
*********
consensus_7878#0 ACTCGTATAATCCTTATTTAAATGGGGTTTTAAATGTCAGTACAAACAATGGTTCGTCAG 660
consensus_7878#1 ACTCGTATAATCCTTATTTAATGGGGTTTTTAAATGTCAGTACAAACAATGGTTCGTCAG 69
********************* *** *********************************
consensus_7878#0 AAATACTTACAAATTGTGTAACAAAAGAATCAAGTGACTTTCCCTCCCAAAGTTCTACTA 720
consensus_7878#1 AAATACTTACAAATTGTGTAACAAAAGAATCAAGTGACTTTCCCTCCCAAAGTTCTACTA 129
************************************************************
consensus_7878#0 ATGAAAGCGTAACTAATCAAGTTATGAATAATTCATGTAAATATAACTTGAAACCTCCAG 780
consensus_7878#1 ATGAAAGCGTAACTAATCAAGTTATGAATAATTCATGTAAATATAACTTGAACCCTCCAG 189
**************************************************** *******
consensus_7878#0 ATTAAATCAATGCTTATTCGACCGACCCCTCTATTCCTCTTTGTTCTCTGGAAACAAAAT 840
consensus_7878#1 ATTAAATCAATGCTTATTCGACCGACCCCTCTATTCCTCTTTGTTCTCTGGAAACAAAAT 249
************************************************************
consensus_7878#0 GCTTTTCTTTAGTTCATAATTTATTTTACTCCCTCGATTTTGTTTATCTTTTCCAAATTA 900
consensus_7878#1 GCTTTTCTTTAGTTCATAATTTATTTTACTCCCTCGATTTTGTTTATCTTTTCCAAATTA 309
************************************************************
consensus_7878#0 TCTAGAGTATTAAATATTATTTTGAAACCAAAAAAAAAAA-----AAAAAAAAAAAAAAA 955
consensus_7878#1 TCTAGAGTATTAAATATTATTTTGAAAACAACTTAGTTGTTTTCTAAAGTTATTTAACAA 369
*************************** *** * *** * ** **
consensus_7878#0 ATCCATGCAGCTGCATTACCGTACTGCGTA------------------------------ 985
consensus_7878#1 TTTTGTAACGAAGCTTTTCCA-ATAATGTACTTAAATGTTACCATTTTTCCAATTATTTG 428
* * * ** ** ** * ***
consensus_7878#0 ------------------------------------------------------------
consensus_7878#1 AAAGTACTCAAATTTATAGCTTTTAGCACTTGGAAGCTTTGAAAATAGTTTTCGTTAAAA 488
consensus_7878#0 --------------------------------
consensus_7878#1 AGTGATAACAACTAATAAACTTCTGAGAGCAC 520
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||