cluster # 7885

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Schistosoma mansoni
cluster # 7885 cluster # 7885 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7885#0 length = 411 sequences # 4

consensus_7885#1 length = 366 sequences # 1

consensusID : consensus_7885#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 411
fasta sequence

                              [CAATGTATCGTAGCACCGTGGATTTTATATGATGGATTATGCTAACAGCAGTCTCGATCCTGAGGTTCTTGAGTTCTATCGTCCAAACAGGTCAAAGCACATTCGTTGCCATTCTCATCAT--CACACATCAGTTTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACACAACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAAATTTTCAGGATTCACGAATACATCACCATCGACCTCAGCTTCAGCCACATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGAGTCCTCAAAATCTTGGGAGTACATNGGGCAGGGGGGGGG]

[+] EMBL CD150011             [CAATGTATCGTANCACCGTGGATTTTATATGATGGATTATGCTAACAGCAGTCTCGATCCTGAGGTTCTTGAGTTCTATCGTCCAAACAGGTCAAAGCACACTCGTTGCCATTCTCATCAT  CACACATCAGTTTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACACAACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAAATTTTCAGGATTCACGAATACATCACCATCGACCTCAGCTTCAGCCACATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGAGTCCTCAAAATCTTGGGAGTACATNGGGCAGGGGGGGGG]
[-] EMBL CD150127             [ AATGTATCGTAGCACCGTGGATTTTATATGATGGATTATGCTAACAGCAGTCTCGATCCTGAGGTTCTTGAGTTCTATCGTCCAAACAGGTCAAAGCACATTCGTTGCCATTCTCATCATCACACACATCAGTTTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACACAACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAAATTTTCAGGATTCACGAATACATCACCATCGACCTCAGCTTCGGCCACATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGAGTCCTCAAAAT                            ]
[-] EMBL CD150112             [ AATGTATCGTAGCACCGTGGATTTTATATGATGGATTATGCTAACAGCAGTCTCGATCCTGAGGTTCTTGAGTTCTATCGTCCAAACAGGTCAAAGCACATTCGTTGCCATTCTCATCATCACACACATCAGTTTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACACAACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAAATTTTCAGGATTCACGAATACATCACCATCGACCTCAGCTTCAGCCACATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGAGTCCTCAAAAT                            ]
[-] EMBL CD150033             [                                                                                                                    ATCAT  CACACATCAGTTTGTCCATCCTAGACGCCTTCATAATTCCCAGCGTACTAATCAGACACAACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAAATTTTCAGGATTCACGAATACATCACCATCGACCTCAGCTTCAGCCACATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGAGTCCTCAAAAT                            ]




>consensus_7885#0
CAATGTATCGTAGCACCGTGGATTTTATATGATGGATTATGCTAACAGCAGTCTCGATCC
TGAGGTTCTTGAGTTCTATCGTCCAAACAGGTCAAAGCACATTCGTTGCCATTCTCATCA
TCACACATCAGTTTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACAC
AACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATG
GGAACATGGCAAATTTTCAGGATTCACGAATACATCACCATCGACCTCAGCTTCAGCCAC
ATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACA
GGTCTTCTGTGAGTCCTCAAAATCTTGGGAGTACATNGGGCAGGGGGGGGG

consensusID : consensus_7885#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [TTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACACAACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAAATTTTCAGGATTCACGAATACAACACCATCGACCTCAGCTTCAGCCACATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGAGTCCTCAAAATCTTGGGAGTACATGTGGGGGAAGTATAAATGCACTCACATCAACTAGTGGTGTTAGTAGTAATTCCGGTAGTTTGTGCACTAGCAGCAGCTCTCATTCAAGCCACAAATCCGGTA]

[-] EMBL CD191460             [TTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACACAACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAAATTTTCAGGATTCACGAATACAACACCATCGACCTCAGCTTCAGCCACATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGAGTCCTCAAAATCTTGGGAGTACATGTGGGGGAAGTATAAATGCACTCACATCAACTAGTGGTGTTAGTAGTAATTCCGGTAGTTTGTGCACTAGCAGCAGCTCTCATTCAAGCCACAAATCCGGTA]




>consensus_7885#1
TTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACACAACTGTCAATCA
CACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATGGGAACATGGCAA
ATTTTCAGGATTCACGAATACAACACCATCGACCTCAGCTTCAGCCACATGTTGTTCATA
AACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACAGGTCTTCTGTGA
GTCCTCAAAATCTTGGGAGTACATGTGGGGGAAGTATAAATGCACTCACATCAACTAGTG
GTGTTAGTAGTAATTCCGGTAGTTTGTGCACTAGCAGCAGCTCTCATTCAAGCCACAAAT
CCGGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7885#0      CAATGTATCGTAGCACCGTGGATTTTATATGATGGATTATGCTAACAGCAGTCTCGATCC 60
consensus_7885#1      ------------------------------------------------------------
                                                                                  

consensus_7885#0      TGAGGTTCTTGAGTTCTATCGTCCAAACAGGTCAAAGCACATTCGTTGCCATTCTCATCA 120
consensus_7885#1      ------------------------------------------------------------
                                                                                  

consensus_7885#0      TCACACATCAGTTTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACAC 180
consensus_7885#1      ------------TTGTCCATCCTAGACGCCTTCATAATTCCCAGCCTACTAATCAGACAC 48
                                  ************************************************

consensus_7885#0      AACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATG 240
consensus_7885#1      AACTGTCAATCACACCATACAATAAAAATTCCAATTATGCAACTCCTAACATTCATCATG 108
                      ************************************************************

consensus_7885#0      GGAACATGGCAAATTTTCAGGATTCACGAATACATCACCATCGACCTCAGCTTCAGCCAC 300
consensus_7885#1      GGAACATGGCAAATTTTCAGGATTCACGAATACAACACCATCGACCTCAGCTTCAGCCAC 168
                      ********************************** *************************

consensus_7885#0      ATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACA 360
consensus_7885#1      ATGTTGTTCATAAACAACATACGGAACATTATCACTATCATGTAAATCAAAATGCATACA 228
                      ************************************************************

consensus_7885#0      GGTCTTCTGTGAGTCCTCAAAATCTTGGGAGTACATNGGGCAGGGGGGGGG--------- 411
consensus_7885#1      GGTCTTCTGTGAGTCCTCAAAATCTTGGGAGTACATGTGGGGGAAGTATAAATGCACTCA 288
                      ************************************  **  *  *              

consensus_7885#0      ------------------------------------------------------------
consensus_7885#1      CATCAACTAGTGGTGTTAGTAGTAATTCCGGTAGTTTGTGCACTAGCAGCAGCTCTCATT 348
                                                                                  

consensus_7885#0      ------------------
consensus_7885#1      CAAGCCACAAATCCGGTA 366