cluster # 7894

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Schistosoma mansoni
cluster # 7894 cluster # 7894 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7894#0 length = 717 sequences # 4

consensus_7894#1 length = 285 sequences # 1

consensusID : consensus_7894#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 717
fasta sequence

                              [GTCTAAAGTAGCTTCATGTACAAGGGTATCCAGAGTTATAGAAGTGATTTGATTTGCAGTATGCAAAACTTGCATAAGACGTAAAAGTTCAGAAGAATCATACGTGTCCCCCATAATTGCAATACGATGACCTCTTAAACGTGGTTTCAATACATCTTCAGGCCGAACTGTTTTACCATCAATGACAATTGTATTACCTCGTTTCAGTTCACCCATTAACCGTCCTTTGGGAACGCCTAATTTTATAGCTGTCTCAACACACAAGGAAGGTGATTGATCCGGCTTTATTATCAGCCAACCTACGGAAGGGATCGTATGTTTTATAGACATTGCATGCACCATTTCACAGTTCTCTTCATTATTTGTAATATTATACCAGAATCCATCATTATTCGCGAAAATGTCTCTACCAGAACGTTCACAAAATAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATTTGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATATGTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTCGCCTTTCTGATCAATTGTACATAAAAATCCAGGTAGACCAGACATATGATCCCTTCC]

[+] EMBL CD137318             [GTCTAAAGTAGCTTCATGTACAAGGGTATCCAGAGTTATAGAAGTGATTTGATTTGCAGTATGCAAAACTTGCATAAGACGTAAAAGTTCAGAAGAATCATACGTGTCCCCCATAATTGCAATACGATGACCTCTTAAACGTGGTTTCAATACATCTTCAGGCCGAACTGTTTTACCATCAATGACAATTGTATTACCTCGTTTCAGTTCACCCATTAACCGTCCTTTGGGAACGCCTAATTTTATAGCTGTCTCAACACACAAGGAAGGTGATTGATCCGGCTTTATTATCAGCCAACCTACGGAAGGGATCGTATGTTTTATAGACATTGCATGCACCATTTCACAGTTCTCTTCATTATTTGTAATATTATACCAGAATCCATCATTATTCGCGAAAATGTCTCTACCAGAACGTTCACAAAATAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATTTGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGGATCTGCGAAGTCCTTTTGGCC                                                                                                                            ]
[+] EMBL CD177824             [                                                                                                                                                                                                                                                                       tGGAAGGTGATTGATCCGGCTTTATTATCAGCCAACCTACGGAAGGGATCGTATGTTTTATAGACATTGCATGCACCATTTCACAGTTCTCTTCATTATTTGTAATATTATACCAAAATCCATCATTATTCGCGAAAATGTCTCTACCAGAACGTTCACAAAATAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATTTGGAGGGCAATGTTTTTCTTCTAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATATGTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTCGCCTTTCTGATCAATTGTACATAAAAATCCAGGTAGACCAGACATATGATCCCTTCC]
[+] EMBL CD179037             [                                                                                                                                                                                                                                                                                       CGGCTTTATTATCAGCCAACCTACGGAAGGGATCGTATGTTTTATAGACATTGCATGCACCATTTCACAGTTCTCTTCATTATTTGTAATATTATACCAGAATCCATCATTATTCGCGAAAATGTCTCTACCAGAACGTTCACAAAATAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATTTGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATATGTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTCGCCTTTCTGATCAATTGTACATAAAAATCCAGGTAGACCcttccac           ]
[-] EMBL CD178814             [                                                                                                                                                                                                                                                                                                                               TTTATAGACATTGCATGCACCATTTCACAGTTCTCTTCATTATTTGTAATATTATACCAGAATCCATCATTATTCGCGAAAATGTCTCTACCAGAACGTTCACAAAATAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATTTGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATATGTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTA                                                                 ]




>consensus_7894#0
GTCTAAAGTAGCTTCATGTACAAGGGTATCCAGAGTTATAGAAGTGATTTGATTTGCAGT
ATGCAAAACTTGCATAAGACGTAAAAGTTCAGAAGAATCATACGTGTCCCCCATAATTGC
AATACGATGACCTCTTAAACGTGGTTTCAATACATCTTCAGGCCGAACTGTTTTACCATC
AATGACAATTGTATTACCTCGTTTCAGTTCACCCATTAACCGTCCTTTGGGAACGCCTAA
TTTTATAGCTGTCTCAACACACAAGGAAGGTGATTGATCCGGCTTTATTATCAGCCAACC
TACGGAAGGGATCGTATGTTTTATAGACATTGCATGCACCATTTCACAGTTCTCTTCATT
ATTTGTAATATTATACCAGAATCCATCATTATTCGCGAAAATGTCTCTACCAGAACGTTC
ACAAAATAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATT
TGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATT
AGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATAT
GTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTC
GCCTTTCTGATCAATTGTACATAAAAATCCAGGTAGACCAGACATATGATCCCTTCC

consensusID : consensus_7894#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence

                              [GAACGTTCACAAATAAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATTTGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATATGTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTCGCCTTTCTGATCACCTCGTGCCGCCTCGGACCGAATT]

[-] EMBL CD078035             [GAACGTTCACAAATAAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATTTGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATATGTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTCGCCTTTCTGATCACCTCGTGCCGCCTCGGACCGAATT]




>consensus_7894#1
GAACGTTCACAAATAAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCT
TGCCAATTTGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAG
CTCAAATTAGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGC
CCGTATATGTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTA
TTAGCTTCGCCTTTCTGATCACCTCGTGCCGCCTCGGACCGAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7894#0      GTCTAAAGTAGCTTCATGTACAAGGGTATCCAGAGTTATAGAAGTGATTTGATTTGCAGT 60
consensus_7894#1      ------------------------------------------------------------
                                                                                  

consensus_7894#0      ATGCAAAACTTGCATAAGACGTAAAAGTTCAGAAGAATCATACGTGTCCCCCATAATTGC 120
consensus_7894#1      ------------------------------------------------------------
                                                                                  

consensus_7894#0      AATACGATGACCTCTTAAACGTGGTTTCAATACATCTTCAGGCCGAACTGTTTTACCATC 180
consensus_7894#1      ------------------------------------------------------------
                                                                                  

consensus_7894#0      AATGACAATTGTATTACCTCGTTTCAGTTCACCCATTAACCGTCCTTTGGGAACGCCTAA 240
consensus_7894#1      ------------------------------------------------------------
                                                                                  

consensus_7894#0      TTTTATAGCTGTCTCAACACACAAGGAAGGTGATTGATCCGGCTTTATTATCAGCCAACC 300
consensus_7894#1      ------------------------------------------------------------
                                                                                  

consensus_7894#0      TACGGAAGGGATCGTATGTTTTATAGACATTGCATGCACCATTTCACAGTTCTCTTCATT 360
consensus_7894#1      ------------------------------------------------------------
                                                                                  

consensus_7894#0      ATTTGTAATATTATACCAGAATCCATCATTATTCGCGAAAATGTCTCTACCAGAACGTTC 420
consensus_7894#1      ----------------------------------------------------GAACGTTC 8
                                                                          ********

consensus_7894#0      ACAAAATAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATT 480
consensus_7894#1      ACAAATAAATGGGGGATCTCGAGTTATATCGGCTTCTAAACACGCCCAATCTTGCCAATT 68
                      *****  *****************************************************

consensus_7894#0      TGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATT 540
consensus_7894#1      TGGAGGGCAATGTTTTTCTTCCAATATTAACTCATGAACAGCATAAGTGTAGCTCAAATT 128
                      ************************************************************

consensus_7894#0      AGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATAT 600
consensus_7894#1      AGCTCTTGATAATGCAAGAGCAAGTCGAAGGAATCTGCGAAGTCCTTTTGGCCCGTATAT 188
                      ************************************************************

consensus_7894#0      GTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTC 660
consensus_7894#1      GTTTATGGAGGCGCTACTATTTTGTGGGTTTGAATCTTCTAATATGACATTATTAGCTTC 248
                      ************************************************************

consensus_7894#0      GCCTTTCTGATCAATTGTACATAAAAATCCAGGTAGACCAGACATATGATCCCTTCC 717
consensus_7894#1      GCCTTTCTGATCACCT---CGTGCCGCCTCGGACCGAATT----------------- 285
                      *************  *   * *       * *   **