cluster # 7901

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Schistosoma mansoni
cluster # 7901 cluster # 7901 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7901#0 length = 1614 sequences # 4

consensus_7901#1 length = 465 sequences # 1

consensusID : consensus_7901#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1614
fasta sequence

                              [GGGCCATATTCGGCCGAGGCACATACTCGCCTCCGAGTATCCTTTTAGACACCTATGAAGTCATGAAAATTTGTTTTTTGATGTTCTCTGTAGTCTCATGGTTGATCCATTACCGTCTACAAGTCAAACACAGCCCAGTAAGCCTTTTTCAGTGGATATTAGAGATTTCTTTGAAAGGATAATGAGACCCCGGCACTTAACGTCCTGGAATCAAGTTGAAGAAGCCATAGATCTTTTGCAGAAAGTTTGTTCCATAAATATTGGTTAACTTACATAGATGACTTACACACACTATGTAGTTAGAGAAAGCAAATTAAATAAAGAAGAGCCTGGACTTCATTACCACTATGTTGTATATGTGTGCACGTTTGGCCACAAAAGAAAGCCGGAAGGTACTGGGCAAAGAGTTAAAGGGTAATTAGTTGTTATTATACTAATAGCCTTTTAGATCGAAATTCACTGGTTGTAAATCCATGTTTAGAATCAGATACGAGCATAACCGATACATAA--TACCGGCTTCTAAAACAGTACACAATCACCCGTGCGACAGCGAATATTTAACAAACGACCCTTGGTCCAGAAAGCTCAGCCAAGACCAGTTGCAAGTTTTAATCCCGATGATCACCGTTAGTTCAGAACCAAATGAAATAATTAAATATGTTGGTGAAACCTTCAACAAAACCATCACGCTCAATGATTACAGAAATCTCCGGCACAAAGTTGCTAAAAGCAAG-TTTCTTATAGTTAAATATCGTTAGGTTGTAGAACTCANAATGACGGTCTNTAC-AAGGTAGACTGTTCAACAACCTTATGAATGTGACGATCATGTCACTCAAATTTCTAGAGTATGCTNTACTAAATTATGTATGTAAATTGTAAGTGGTTTCTTGAGGTAATTGTTATCGAATTCACATATACAAACAGAAAAGTAAAGAGGTTCCACTTACTAACAATTATTTGTTTCAATTAGTTATTACACATAACAATGGTTACGTATATCCAGTTGCTTTTGCTCAATCTAAACATGATAAAAACGTACGGATAAATCTAGGCTCACCATGACAGAAGTAACAACTAAAGCATTCCCAATATACTTTGTTGAATGTATAAACCAAGGAATATTAATGATACATTATANGACTGGACGTTCCTCTAGAAAAGTTGTTTTCTACGGAATGACATTGTTTACCTCATACCCAGCCCTCCTTCATCAAGGCTTGGGACTGGCAATTTCATCTCTGTGCTAATGGGGTATAGCAACTTGAATTGATGTACATACGTACTAGGTTTTTCATTGTAAACTGACTGACTGGATTAACACTCTTGATCAGGGGTCTTTTTCCATTGTGTATAAAGTTCGAATGAGTTATTCTCTCAGCTGATTCCAAACGTGGATTTAAAACTGGTGTCGTTCGTCCTAACCTTCGGCAGCATACACACCAGCTTATCACACAAATACAGCATGATAATATCGTAGCTCATGTTTTACTTCATTCACTTTGCTTTCTTTACTACAGAAAGCACGGATTTTATCTGTTGACAAGTATATTTGGTATAAGTTAAATTATTTTCTCAAGCTAATCCTTGGCTCACTAATATTTTCGCTTCCCATTT]

[+] EMBL CD081493             [GGGCCATATTCGGCCGAGGCACATACTCGCCTCCGAGTATCCTTTTAGACACCTATGAAGTCATGAAAATTTGTTTTTTGATGTTCTCTGTAGTCTCATGGTTGATCCATTACCGTCTACAAGTCAAACACAGCCCAGTAAGCCTTTTTCAGTGGATATTAGAGATTTCTTTGAAAGGATAATGAGACCCCGGCACTTAACGTCCTGGAATCAAGTTGAAGAAGCCATAGATCTTTTGCAGAAAGTTTGTTCCATAAATATTGGTTAACTTACATAGATGACTTACACACACTATGTAGTTAGAGAAAGCAAATTAAATAAAGAAGAGCCTGGACTTCATTACCACTATGTTGTATATGTGTGCACGTTTGGCCACAAAAGAAAGCCGGAAGGTACTGGGCAAAGAGTTAAAGGGTAATTAGTTGTTATTATACTAATAGCCTTTTAGATCGAAATTCACTGGTTGTAAATCCATGTTTAGAATCAGATACGAGCATAACCGATACATAA  TACCGGCTTCTAAAACAGTACACAATCACCCGTGCGACAGCGAATATTTAACAAACGACCCTTGGTCCAGAAAGCTCAGCCAAGACCAGTTGCAAGTTTTAATCCCGATGATCACCGTTAGTTCAGAACCAAATGAAATAATTAAATATGTTGGTGAAACCTTCAACAAAACCATCACGCTCAATGATTACAGAAATCTCCGGCACAAAGTTGCTAAAAGCAAG TTTCTTATAGTTAAATATCGTTAGGTTGTAGAACTCANAATGACGGTCTNTAC AAGGTAGACTGTTCAACAACCTTATGAATGTGACGATCATGTCACTCAAATTTCTAGAGTATGCTNTACTAAATTATGTATGTAAATTGTAAGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD081862             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aaggATAANNTACCGGCTTCTAAAACAGTACACAATCACCCGTGCGACAGCGAATATTTAACAAACGACCCTTGGTCCAGAAAGCTCAGCCAAGACCAGTTGCAAGTTTTAATCCCGATGATCACCGTTAGTTCAGAACCAAATGAAATAATTAAATATGTTGGTGAAACCTTCAACAAAACCATCACGCTCAATGATTACAGAAATCTCCGGCACAAAGTTGCTAAAAGCAAGTTTTCTTATAGTTAAATATCGTTAGGTTGTAGAACTCAAAATGACGGTCT TACAAAGGTAGACTGTTCAACAACCTTATGAATGTGACGATCATGTCACTCAAATTTCTAGAGTATGCTTTACTAAATTATGTATGTAAATTGTAAGTGGTTTCTTGAGGTAATTGTTATCGAATTCACATATACAAACAGAAAAGTAAAGAGGTTCCACTTACTAACAATTATTTGTTTCAATTAGTTATTACACATAACAATGGTTACGTATATCCAGTTGCTTTTGCTCAATCTAAACATGATAAAAACGTACGGATAAATCTAGGCTCACCATGACAGAAGTAACAACTAAAGCATTCCCAATATACTTTGTTGAATGTATAAACCAAGGAATATTAATGATACATTATANGACTGGACGTTCCTCTAGAAAAGTTGTTTTCTACGGAATGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD075575             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGCTCACCATGACAGAAGTAACAACTAAAGCATTCCCAATATACTTTGTTGAATGTATAAACCAAGGAATATTAATGATACATTATA GACTGGACGTTCCTCTAGAAAAGTTGTTTTCTACGGAATGACATTGTTTACCTCATACCCAGCCCTCCTTCATCAAGGCTTGGGACTGGCAATTTCATCTCTGTGCTAATGGGGTATAGCAACTTGAATTGATGTACATACGTACTAGGTTTTTCATTGTAAACTGACTGACTGGATTAACACTCTTGATCAGGGGTCTTTTTCCATTGTGTATAAAGTTCGAATGAGTTATTCTCTCAGCTGATTCCAAACGTGGATTTAAAACTGGTGTCGTTCGTCCTAACCTTCGGCAGCATACACACCAGCTTATCACACAAATACAGCATGATAATATCGTAGCTCATGTTTTACTTCATTCACTTTGCTTTCTTTACTACAGAAAGCACGGATTTTATCTGTTGACAAGTATATTTGGTATAAGTTAAATTATTTTCTCAAGCTAATCCTTGGCTCACTAATATTTTCGCTTCCCATTT]
[-] EMBL CD075317             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCAAGGCTTGGGACTGGCAATTTCATCTCTGTGCTAATGGGGTATAGCAACTTGAATTGATGTACATACGTACTAGGTTTTTCATTGTAAACTGACTGACTGGATTAACACTCTTGATCAGGGGTCTTTTTCCATTGTGTATAAAGTTCGAATGAGTTATTCTCTCAGCTGATTCCAAACGTGGATTTAAAACTGGTGTCGTTCGTCCTAACCTTCGGCAGCATACACACCAGCTTATCACACAAATACAGCATGATAATATCGTAGCTCATGTTTTACTTCATTCACTTTGCTTTCTTTACTACAGAAAGCACGGATTTTATCTGTTGACAAGTATATTTGGTATAAGTTAAATTATTTTCTCAAGCTAATCCTTGGCTCACTAATATTTTCGCTTCCCATTT]




>consensus_7901#0
GGGCCATATTCGGCCGAGGCACATACTCGCCTCCGAGTATCCTTTTAGACACCTATGAAG
TCATGAAAATTTGTTTTTTGATGTTCTCTGTAGTCTCATGGTTGATCCATTACCGTCTAC
AAGTCAAACACAGCCCAGTAAGCCTTTTTCAGTGGATATTAGAGATTTCTTTGAAAGGAT
AATGAGACCCCGGCACTTAACGTCCTGGAATCAAGTTGAAGAAGCCATAGATCTTTTGCA
GAAAGTTTGTTCCATAAATATTGGTTAACTTACATAGATGACTTACACACACTATGTAGT
TAGAGAAAGCAAATTAAATAAAGAAGAGCCTGGACTTCATTACCACTATGTTGTATATGT
GTGCACGTTTGGCCACAAAAGAAAGCCGGAAGGTACTGGGCAAAGAGTTAAAGGGTAATT
AGTTGTTATTATACTAATAGCCTTTTAGATCGAAATTCACTGGTTGTAAATCCATGTTTA
GAATCAGATACGAGCATAACCGATACATAATACCGGCTTCTAAAACAGTACACAATCACC
CGTGCGACAGCGAATATTTAACAAACGACCCTTGGTCCAGAAAGCTCAGCCAAGACCAGT
TGCAAGTTTTAATCCCGATGATCACCGTTAGTTCAGAACCAAATGAAATAATTAAATATG
TTGGTGAAACCTTCAACAAAACCATCACGCTCAATGATTACAGAAATCTCCGGCACAAAG
TTGCTAAAAGCAAGTTTCTTATAGTTAAATATCGTTAGGTTGTAGAACTCANAATGACGG
TCTNTACAAGGTAGACTGTTCAACAACCTTATGAATGTGACGATCATGTCACTCAAATTT
CTAGAGTATGCTNTACTAAATTATGTATGTAAATTGTAAGTGGTTTCTTGAGGTAATTGT
TATCGAATTCACATATACAAACAGAAAAGTAAAGAGGTTCCACTTACTAACAATTATTTG
TTTCAATTAGTTATTACACATAACAATGGTTACGTATATCCAGTTGCTTTTGCTCAATCT
AAACATGATAAAAACGTACGGATAAATCTAGGCTCACCATGACAGAAGTAACAACTAAAG
CATTCCCAATATACTTTGTTGAATGTATAAACCAAGGAATATTAATGATACATTATANGA
CTGGACGTTCCTCTAGAAAAGTTGTTTTCTACGGAATGACATTGTTTACCTCATACCCAG
CCCTCCTTCATCAAGGCTTGGGACTGGCAATTTCATCTCTGTGCTAATGGGGTATAGCAA
CTTGAATTGATGTACATACGTACTAGGTTTTTCATTGTAAACTGACTGACTGGATTAACA
CTCTTGATCAGGGGTCTTTTTCCATTGTGTATAAAGTTCGAATGAGTTATTCTCTCAGCT
GATTCCAAACGTGGATTTAAAACTGGTGTCGTTCGTCCTAACCTTCGGCAGCATACACAC
CAGCTTATCACACAAATACAGCATGATAATATCGTAGCTCATGTTTTACTTCATTCACTT
TGCTTTCTTTACTACAGAAAGCACGGATTTTATCTGTTGACAAGTATATTTGGTATAAGT
TAAATTATTTTCTCAAGCTAATCCTTGGCTCACTAATATTTTCGCTTCCCATTT

consensusID : consensus_7901#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [TTCTTTAGATGTCCACATACTCGCCTCCGAGTATCCTTTTAGACACCTATGAAGTCATGAAAATTTGTTTTTTGATGTTCTCTGTAGTCTCATGGTTGATCCATTACCGTCTACAAGTCAAACACAGCCCAGTAAGCCTTTTTCAGTGGATATTAGAGATTTCTTTGAAAGGATAATGAGACCCCGGCACTTAACGTCCTGGAATCAAGTTGAAGAAGCCATAGATCTTTTGCAGAAAGTTTGTTCCATAAATATTGGTTAACTTACATAGATGACTTACACACACTATGTAGTTAGAGAAAGCAAATTAAATAAAGAAGAGCCTGGACTTCATTACCACTATGTTGTATATGTGTGCACGTTTGGCCACAAAAGAAAGCCGGAAGGTACTGGGCAAAGAGTTAAAGGATCGAAATTCACTGGTTGTAAATCCATGTTTAGAATCAGATACGAGCATAACCGATA]

[-] EMBL CD202131             [TTCTTTAGATGTCCACATACTCGCCTCCGAGTATCCTTTTAGACACCTATGAAGTCATGAAAATTTGTTTTTTGATGTTCTCTGTAGTCTCATGGTTGATCCATTACCGTCTACAAGTCAAACACAGCCCAGTAAGCCTTTTTCAGTGGATATTAGAGATTTCTTTGAAAGGATAATGAGACCCCGGCACTTAACGTCCTGGAATCAAGTTGAAGAAGCCATAGATCTTTTGCAGAAAGTTTGTTCCATAAATATTGGTTAACTTACATAGATGACTTACACACACTATGTAGTTAGAGAAAGCAAATTAAATAAAGAAGAGCCTGGACTTCATTACCACTATGTTGTATATGTGTGCACGTTTGGCCACAAAAGAAAGCCGGAAGGTACTGGGCAAAGAGTTAAAGGATCGAAATTCACTGGTTGTAAATCCATGTTTAGAATCAGATACGAGCATAACCGATA]




>consensus_7901#1
TTCTTTAGATGTCCACATACTCGCCTCCGAGTATCCTTTTAGACACCTATGAAGTCATGA
AAATTTGTTTTTTGATGTTCTCTGTAGTCTCATGGTTGATCCATTACCGTCTACAAGTCA
AACACAGCCCAGTAAGCCTTTTTCAGTGGATATTAGAGATTTCTTTGAAAGGATAATGAG
ACCCCGGCACTTAACGTCCTGGAATCAAGTTGAAGAAGCCATAGATCTTTTGCAGAAAGT
TTGTTCCATAAATATTGGTTAACTTACATAGATGACTTACACACACTATGTAGTTAGAGA
AAGCAAATTAAATAAAGAAGAGCCTGGACTTCATTACCACTATGTTGTATATGTGTGCAC
GTTTGGCCACAAAAGAAAGCCGGAAGGTACTGGGCAAAGAGTTAAAGGATCGAAATTCAC
TGGTTGTAAATCCATGTTTAGAATCAGATACGAGCATAACCGATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7901#0      GGGCCATATTCGGCCGAGGCACATACTCGCCTCCGAGTATCCTTTTAGACACCTATGAAG 60
consensus_7901#1      -----TTCTTTAGATGTC-CACATACTCGCCTCCGAGTATCCTTTTAGACACCTATGAAG 54
                            * **  *  *   *****************************************

consensus_7901#0      TCATGAAAATTTGTTTTTTGATGTTCTCTGTAGTCTCATGGTTGATCCATTACCGTCTAC 120
consensus_7901#1      TCATGAAAATTTGTTTTTTGATGTTCTCTGTAGTCTCATGGTTGATCCATTACCGTCTAC 114
                      ************************************************************

consensus_7901#0      AAGTCAAACACAGCCCAGTAAGCCTTTTTCAGTGGATATTAGAGATTTCTTTGAAAGGAT 180
consensus_7901#1      AAGTCAAACACAGCCCAGTAAGCCTTTTTCAGTGGATATTAGAGATTTCTTTGAAAGGAT 174
                      ************************************************************

consensus_7901#0      AATGAGACCCCGGCACTTAACGTCCTGGAATCAAGTTGAAGAAGCCATAGATCTTTTGCA 240
consensus_7901#1      AATGAGACCCCGGCACTTAACGTCCTGGAATCAAGTTGAAGAAGCCATAGATCTTTTGCA 234
                      ************************************************************

consensus_7901#0      GAAAGTTTGTTCCATAAATATTGGTTAACTTACATAGATGACTTACACACACTATGTAGT 300
consensus_7901#1      GAAAGTTTGTTCCATAAATATTGGTTAACTTACATAGATGACTTACACACACTATGTAGT 294
                      ************************************************************

consensus_7901#0      TAGAGAAAGCAAATTAAATAAAGAAGAGCCTGGACTTCATTACCACTATGTTGTATATGT 360
consensus_7901#1      TAGAGAAAGCAAATTAAATAAAGAAGAGCCTGGACTTCATTACCACTATGTTGTATATGT 354
                      ************************************************************

consensus_7901#0      GTGCACGTTTGGCCACAAAAGAAAGCCGGAAGGTACTGGGCAAAGAGTTAAAGGGTAATT 420
consensus_7901#1      GTGCACGTTTGGCCACAAAAGAAAGCCGGAAGGTACTGGGCAAAGAGTTAAAGG------ 408
                      ******************************************************      

consensus_7901#0      AGTTGTTATTATACTAATAGCCTTTTAGATCGAAATTCACTGGTTGTAAATCCATGTTTA 480
consensus_7901#1      ----------------------------ATCGAAATTCACTGGTTGTAAATCCATGTTTA 440
                                                  ********************************

consensus_7901#0      GAATCAGATACGAGCATAACCGATACATAATACCGGCTTCTAAAACAGTACACAATCACC 540
consensus_7901#1      GAATCAGATACGAGCATAACCGATA----------------------------------- 465
                      *************************                                   

consensus_7901#0      CGTGCGACAGCGAATATTTAACAAACGACCCTTGGTCCAGAAAGCTCAGCCAAGACCAGT 600
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      TGCAAGTTTTAATCCCGATGATCACCGTTAGTTCAGAACCAAATGAAATAATTAAATATG 660
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      TTGGTGAAACCTTCAACAAAACCATCACGCTCAATGATTACAGAAATCTCCGGCACAAAG 720
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      TTGCTAAAAGCAAGTTTCTTATAGTTAAATATCGTTAGGTTGTAGAACTCANAATGACGG 780
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      TCTNTACAAGGTAGACTGTTCAACAACCTTATGAATGTGACGATCATGTCACTCAAATTT 840
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      CTAGAGTATGCTNTACTAAATTATGTATGTAAATTGTAAGTGGTTTCTTGAGGTAATTGT 900
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      TATCGAATTCACATATACAAACAGAAAAGTAAAGAGGTTCCACTTACTAACAATTATTTG 960
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      TTTCAATTAGTTATTACACATAACAATGGTTACGTATATCCAGTTGCTTTTGCTCAATCT 1020
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      AAACATGATAAAAACGTACGGATAAATCTAGGCTCACCATGACAGAAGTAACAACTAAAG 1080
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      CATTCCCAATATACTTTGTTGAATGTATAAACCAAGGAATATTAATGATACATTATANGA 1140
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      CTGGACGTTCCTCTAGAAAAGTTGTTTTCTACGGAATGACATTGTTTACCTCATACCCAG 1200
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      CCCTCCTTCATCAAGGCTTGGGACTGGCAATTTCATCTCTGTGCTAATGGGGTATAGCAA 1260
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      CTTGAATTGATGTACATACGTACTAGGTTTTTCATTGTAAACTGACTGACTGGATTAACA 1320
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      CTCTTGATCAGGGGTCTTTTTCCATTGTGTATAAAGTTCGAATGAGTTATTCTCTCAGCT 1380
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      GATTCCAAACGTGGATTTAAAACTGGTGTCGTTCGTCCTAACCTTCGGCAGCATACACAC 1440
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      CAGCTTATCACACAAATACAGCATGATAATATCGTAGCTCATGTTTTACTTCATTCACTT 1500
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      TGCTTTCTTTACTACAGAAAGCACGGATTTTATCTGTTGACAAGTATATTTGGTATAAGT 1560
consensus_7901#1      ------------------------------------------------------------
                                                                                  

consensus_7901#0      TAAATTATTTTCTCAAGCTAATCCTTGGCTCACTAATATTTTCGCTTCCCATTT 1614
consensus_7901#1      ------------------------------------------------------