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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1597 fasta sequence
[TTGATTTCATGTTAAAGTACAGCTTTGATAAAGTTATGGATGATGTTCAACTACTTGTATCTCGATTGCGTGCACGTGAAGAGTCGGTCGATATATTAAGACAACAGCTATGCAAATTACAAGCACAGTTACTGAGTATGAGACAGTGTCAAGAAACAATTCTTGAGTTTGATGAATTCTCCAAACGGGTCTCTAATCAACCAAAAGGTCCACTGATTATTTGTCTTGCAGCTGAGAACAAACAATTAGAACAGTTGAAAATTGAAAATAAAACATTAAGAAATTCCCTTGATGAACATCAAACTGCTTTAGATATGATTATGACTAAATATCGTGGACAAATTTCTAAACTAATGAGAACCTATCAAGTTGAACATCTTGTTCAATCAGTTATAAATCCTGATAATAACGAAAATCGATGTATAAAATCTTTTTACCCGGGTCCAAAATCAGTTAATACCCCTTCAACTAATTCCATTGATTCACAATCTGTATCACAAAAATCAAATTCAGGTAAAGTTGACGAGATAACAGATGGTATAAGTCAATCATTAACTGAACAATTTACTACGGTAGCTTCTATTGTCCGTGACGTTACTGATCGTGGTGATGCGTATGCTACTGAATTAGAAGAAGAATTACATCGATTAAGATCTGAAAATGCCGGTCTTCGAGAAATTTTAATGATATCGTCTGATTGTTGTCCTGATACTAATTCTAATGATTGTGTTCTTCCACCTGTATCGTTACCAAATAAAGATTCTATACAACATGAATCATCTTCATTATCATCTATTCAGTCAGGACGATTTCATTTTCTTGATGAAGATTCTAGTTCAATTCATTTACCAGGTATTGATGAATGCTTAAGTAGTGTTAATGTCAACGAAGATTCATTTTTATACAATATTCCTAATCCTTCTGATGATAGCAGTAATAGTGGTACAATTAGTGGTAATCATTCAGATGAGGATAGTGATGAAGATGATAATACAGTTTATGAGGTTGCTATGAATCAAATGATTAACTCCCTATAATTCTCTTGTTCATTAGTCGTCATGAAATTCATTAGCTTTTATCTTATTAATAATATTATTTATTATGTTGAATGAATGTCTTATATAGAATGAAAATAGTTGTCAACTTTTAAACATTTCGTTCACACTTTCTCTTCTCTCCTTTTTATGACTGAGAGATTTTGATTGTCCGGTTTTAAATAAGTAAATAATTTATGTGTTTTGTATTGGAGAAATTACCAATTCCCAAGTTAATATACTCATGAAAGAACATCACAAATTGTAATATTGTATACACCTTTTTTTCCTAAAAAAAGTCAATCTAAGTAATTCGTTCATAATACAGAAGCGAAAAATCTTTCAAATAACAACAAATCTTATTTGTTAGTTTCTGTGTTTATTTATCTTAAACATTCTAAATAAAACTATCTTATTTGTAAAAAAAACACAACAACAATTGATTGGTTTCTATTGAACACTTAATTGTGAAAATACTAAAACAATGATAGAATGCATTGTACCATCCTTTTTGGCAATGTGAATAACACATATTTTACATTTAAATCTAGAATATAAAGAAT]
[+] EMBL SMU94619 [TTGATTTCATGTTAAAGTACAGCTTTGATAAAGTTATGGATGATGTTCAACTACTTGTATCTCGATTGCGTGCACGTGAAGAGTCGGTCGATATATTAAGACAACAGCTATGCAAATTACAAGCACAGTTACTGAGTATGAGACAGTGTCAAGAAACAATTCTTGAGTTTGATGAATTCTCCAAACGGGTCTCTAATCAACCAAAAGGTCCACTGATTATTTGTCTTGCAGCTGAGAACAAACAATTAGAACAGTTGAAAATTGAAAATAAAACATTAAGAAATTCCCTTGATGAACATCAAACTGCTTTAGATATGATTATGACTAAATATCGTGGACAAATTTCTAAACTAATGAGAACCTATCAAGTTGAACATCTTGTTCAATCAGTTATAAATCCTGATAATAACGAAAATCGATGTATAAAATCTTTTTACCCGGGTCCAAAATCAGTTAATACCCCTTCAACTAATTCCATTGATTCACAATCTGTATCACAAAAATCAAATTCAGGTAAAGTTGACGAGATAACAGATGGTATAAGTCAATCATTAACTGAACAATTTACTACGGTAGCTTCTATTGTCCGTGACGTTACTGATCGTGGTGATGCGTATGCTACTGAATTAGAAGAAGAATTACATCGATTAAGATCTGAAAATGCCGGTCTTCGAGAAATTTTAATGATATCGTCTGATTGTTGTCCTGATACTAATTCTAATGATTGTGTTCTTCCACCTGTATCGTTACCAAATAAAGATTCTATACAACATGAATCATCTTCATTATCATCTATTCAGTCAGGACGATTTCATTTTCTTGATGAAGATTCTAGTTCAATTCATTTACCAGGTATTGATGAATGCTTAAGTAGTGTTAATGTCAACGAAGATTCATTTTTATACAATATTCCTAATCCTTCTGATGATAGCAGTAATAGTGGTACAATTAGTGGTAATCATTCAGATGAGGATAGTGATGAAGATGATAATACAGTTTATGAGGTTGCTATGAATCAAATGATTAACTCCCTATAATTCTCTTGTTCATTAGTCGTCATGAAATTCATTAGCTTTTATCTTATTAATAATATTATTTATTATGTTGAATGAATGTCTTATATAGAATGAAAATAGTTGTCAACTTTTAAACATTTCGTTCACACTTTCTCTTCTCTCCTTTTTATGACTGAGAGATTTTGATTGTCCGGTTTTAAATAAGTAAATAATTTATGTGTTTTGTATTGGAGAAATTACCAATTCCCAAGTTAATATACTCATGAAAGAACATCACAAATTGTAATATTGTATACACCTTTTTTTCCTAAAAAAAGTCAATCTAAGTAATTCGTTCATAATACAGAAGCGAAAAATCTTTCAAATAACAACAAATCTTATTTGTTAGTTTCTGTGTTTATTTATCTTAAACATTCTAAATAAAACTATCTTATTTGTAAAAAAAACACAACAACAATTGATTGGTTTCTATTGAACACTTAATTGTGAAAATACTAAAACAATGATAGAATGCATTGTACCATCCTTTTTGGCAATGTGAATAACACATATTTTACATTTAAATCTAGAATATAAAG ]
[-] EMBL CD067513 [ TTCCCTTGATGAACATCAAACTGCTTTAGATATGATTATGACTAAATATCGTGGACAAATTTCTAAACTAATGAGAACCTATCAAGTTGAACATCTTGTTCAATCAGTTATAAATCCTGATAATAACGAAAATCGATGTATAAAATCTTTTTACCCGGGTCCAAAATCAGTTAATACCCCTTCAACTAATTCCATTGATTCACAATCTGTATCACAAAAATCAAATTCAGGTAAAGTTGACGAGATAACAGATGGTATAAGTCAATCATTAACTGAACAATTTACTACGGTAGCTTCTATTGTCCGTGACGTTACTGATCGTGGTGATGCGTATGCTACTGAATTAGAAGAAGAATTACATCGATTAAGATCTGAAAATGCCGGTCTTCGAGAAATTTTAATGATATCGTC ]
[-] EMBL AI740220 [ TTTTTTCCTCAAAAAAGTCAATCTAAGTAATTCGTTCATAATACAGAAGCGAAAAATCTTTCAAATAACAACAAATCTTATTTGTTAGTTTCTGTGTTTATTTATCTTAAACATTCTAAATAAAACTATCTTATTTGT AAAAAAACACAACAACAATTGATTGGTTTCTATTGAACACTTAATTGTGAAAATACTAAAACAATGATAGAATGCATTGTACCATCCTTTTTGGCAATGTGAATAACACATATTTTACATTTAAATCTAGAATATAAAGAAT]
consensusID : consensus_7910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 304 fasta sequence
[AAGCAATGATTATTACAGATTACTTTCCAAACAACTCTGGTCTTAAGTACGACTACATAAAATATTAATAGGAAAGTACGAAATGTTGTTACATCAAACTAAACGAGAAACGAAATAGCTGTTTCATGATTATTACACAAAACATATAAAGATATACAGAATAGTATATGGAAACTTCAAGAAAATTCCAATGTTATAAATACAACTAACTTGTCCACGATATTTAGTCATAATCATATCTAAAGCAATTTG-ATGTTCATCACAGGAATTCCTTAATGGTTTATTTCTC-ATTTTCAACTGGGCT]
[+] EMBL CD149301 [AAGCAATGATTATTACAGATTACTTTCCAAACAACTCTGGTCTTAAGTACGACTACATAAAATATTAATAGGAAAGTACGAAATGTTGTTACATCAAACTAAACGAGAAACGAAATAGCTGTTTCATGATTATTACACAAAACATATAAAGATATACAGAATAGTATATGGAAACTTCAAGAAAATTCCAATGTTATAAATACAACTAACTTGTCCACGATATTTAGTCATAATCATATCTAAAGCAATTTG ATGTTCATCACAGGAATTCCTTAATGGTTTATTTCTC ATTTTCAACTGGGCT]
[+] EMBL CD149271 [AAGCAATGATTATTACAGATTACTTTCCAAACAACTCTGGTCTTAAGTACGACTACATAAAATATTAATAGGAAAGTACGAAATGTTGTTACATCAAACTAAACGAGAAACGAAATAGCTGTTTCATGATTATTACACAAAACATATAAAGATATACAGAATAGTATATGGAAACTTCAAAAAAATTCCAATGTTATAAATACAACTAACTTGCTCACAATA TTAGTCATAGTCATATCTAAAGCAGTTTGAATG TCATCAAGGGAATTTCTTAATGTTTTATTT TCAATTTTCAACTGGTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7910#0 TTGATTTCATGTTAAAGTACAGCTTTGATAAAGTTATGGATGATGTTCAACTACTTGTAT 60
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 CTCGATTGCGTGCACGTGAAGAGTCGGTCGATATATTAAGACAACAGCTATGCAAATTAC 120
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 AAGCACAGTTACTGAGTATGAGACAGTGTCAAGAAACAATTCTTGAGTTTGATGAATTCT 180
consensus_7910#1 ---------------------------------AAGCAATGATTATTACAGATTA-CTTT 26
** **** ** *** * * *
consensus_7910#0 CCAAACGGGTCTCTAATCAACCAAAAGGTCCACTGATTATTTGTCTTGCAGCTGAGAACA 240
consensus_7910#1 CCAAACAACTCTGGTCTTAAGTACGAC-TACATAAAATATTAAT-----AGGAAAGTACG 80
****** *** * ** * * * ** * **** * ** ** **
consensus_7910#0 AACAATTAGAACAGTTGAAAATTGAAAATAAAACATTAAGAAATTCCCTTGATGAACATC 300
consensus_7910#1 AAATGTTGTTACATC---AAACTAAACGAGAAAC---GAAATAGCTGTTTCATGATTATT 134
** ** *** *** * ** **** * * * ** **** **
consensus_7910#0 AAACTGCTTTAGATATGATTATGACTAAATATCGTGGACAAATTTCTAAACTAATGAGAA 360
consensus_7910#1 ACAC-AAAACATATAAAGATAT-ACAGAATAGTATATGGAAACTTCAAGAAAATTCCAAT 192
* ** * *** *** ** **** * *** *** * * * * *
consensus_7910#0 CCTATCAAGTTGAACATCTTGTTCAATCAGTTATAAATCCTGATAATAACGAAAATCGAT 420
consensus_7910#1 GTTATAAATACAACTAACTTGTCCA--CGATATTTAGTCATAATCATATCTAAAGCAATT 250
*** ** * * ***** ** * * * * ** * ** *** * *** *
consensus_7910#0 GTATAAAATCTTTTTACCCGGGTCCAAAATCAGTTAATACCCC---TTCAACTAATTCCA 477
consensus_7910#1 TGATG----TTCATCACAGGAATTCCTTAATGGTTTATTTCTCATTTTCAACTGGGCT-- 304
** * * ** * * * * *** ** * * *******
consensus_7910#0 TTGATTCACAATCTGTATCACAAAAATCAAATTCAGGTAAAGTTGACGAGATAACAGATG 537
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 GTATAAGTCAATCATTAACTGAACAATTTACTACGGTAGCTTCTATTGTCCGTGACGTTA 597
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 CTGATCGTGGTGATGCGTATGCTACTGAATTAGAAGAAGAATTACATCGATTAAGATCTG 657
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 AAAATGCCGGTCTTCGAGAAATTTTAATGATATCGTCTGATTGTTGTCCTGATACTAATT 717
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 CTAATGATTGTGTTCTTCCACCTGTATCGTTACCAAATAAAGATTCTATACAACATGAAT 777
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 CATCTTCATTATCATCTATTCAGTCAGGACGATTTCATTTTCTTGATGAAGATTCTAGTT 837
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 CAATTCATTTACCAGGTATTGATGAATGCTTAAGTAGTGTTAATGTCAACGAAGATTCAT 897
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 TTTTATACAATATTCCTAATCCTTCTGATGATAGCAGTAATAGTGGTACAATTAGTGGTA 957
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 ATCATTCAGATGAGGATAGTGATGAAGATGATAATACAGTTTATGAGGTTGCTATGAATC 1017
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 AAATGATTAACTCCCTATAATTCTCTTGTTCATTAGTCGTCATGAAATTCATTAGCTTTT 1077
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 ATCTTATTAATAATATTATTTATTATGTTGAATGAATGTCTTATATAGAATGAAAATAGT 1137
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 TGTCAACTTTTAAACATTTCGTTCACACTTTCTCTTCTCTCCTTTTTATGACTGAGAGAT 1197
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 TTTGATTGTCCGGTTTTAAATAAGTAAATAATTTATGTGTTTTGTATTGGAGAAATTACC 1257
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 AATTCCCAAGTTAATATACTCATGAAAGAACATCACAAATTGTAATATTGTATACACCTT 1317
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 TTTTTCCTAAAAAAAGTCAATCTAAGTAATTCGTTCATAATACAGAAGCGAAAAATCTTT 1377
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 CAAATAACAACAAATCTTATTTGTTAGTTTCTGTGTTTATTTATCTTAAACATTCTAAAT 1437
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 AAAACTATCTTATTTGTAAAAAAAACACAACAACAATTGATTGGTTTCTATTGAACACTT 1497
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 AATTGTGAAAATACTAAAACAATGATAGAATGCATTGTACCATCCTTTTTGGCAATGTGA 1557
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 ATAACACATATTTTACATTTAAATCTAGAATATAAAGAAT 1597
consensus_7910#1 ----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||