cluster # 7913

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Schistosoma mansoni
cluster # 7913 cluster # 7913 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7913#0 length = 500 sequences # 1

consensus_7913#1 length = 428 sequences # 5

consensusID : consensus_7913#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 500
fasta sequence

                              [AGATATAATGACAATAGTAAGCAAATGAAAAGTAACAGTATATACATCAAAATGTTGGCCCTCAACAGGGCAGTGAAGCTCCACCAAGAATCCACATGTCAGATTTAGCCACCAAAACCATACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTATGACGCTTGGCCCCTCCCTTTCCAAGACCTTTCCCACCTTTACCTCTACCAGACATGACTCACCGAAAGACAGACTAGCAAACTAATCAGGTCTGAAATTAAAAAGAGCGTATTACGTAAAATCCCTTAGAAAAGAAAGC]

[+] EMBL CD073814             [AGATATAATGACAATAGTAAGCAAATGAAAAGTAACAGTATATACATCAAAATGTTGGCCCTCAACAGGGCAGTGAAGCTCCACCAAGAATCCACATGTCAGATTTAGCCACCAAAACCATACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTATGACGCTTGGCCCCTCCCTTTCCAAGACCTTTCCCACCTTTACCTCTACCAGACATGACTCACCGAAAGACAGACTAGCAAACTAATCAGGTCTGAAATTAAAAAGAGCGTATTACGTAAAATCCCTTAGAAAAGAAAGC]




>consensus_7913#0
AGATATAATGACAATAGTAAGCAAATGAAAAGTAACAGTATATACATCAAAATGTTGGCC
CTCAACAGGGCAGTGAAGCTCCACCAAGAATCCACATGTCAGATTTAGCCACCAAAACCA
TACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTC
CGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTC
AACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGA
GCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTA
TGACGCTTGGCCCCTCCCTTTCCAAGACCTTTCCCACCTTTACCTCTACCAGACATGACT
CACCGAAAGACAGACTAGCAAACTAATCAGGTCTGAAATTAAAAAGAGCGTATTACGTAA
AATCCCTTAGAAAAGAAAGC

consensusID : consensus_7913#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 428
fasta sequence

                              [ATTATGCANTAGTAGCAATGAAAAGTACCAGTATATCNTCAAATGTGGCCCTCAACAGGNCAGTGAAGCTNCNCCAAGAATCCACATGTCAGATTTAGCCACCAAAACCATACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTATGACGCTTGGCCCCTCCCTTTCCAAGACCTTTCCCACCTTTACCTCTACCAGACATGACTCACCGCCTCGTGCCGAAT]

[-] EMBL CD077479             [ATTATGCANTAGTAGCAATGAAAAGTACCAGTATATCNTCAAATGTGGCCCTCAACAGGNCAGTGAAGCTNCNCCAAGAATCCACATGTCAGATTTAGCCACCAAAACCATACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTATGACGCTTGGCCCCTCCCTTTCCAAGACCTTTCCCACCTTTACCTCTACCAGACATGACTCACCGCCTCGTGCCGAAT]
[-] EMBL CD180745             [                                                                                       GTCAGATTTAGCCACCAAAACCATACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAA                                                                                                                                                                 ]
[-] EMBL CD147610             [                                                                                                               ACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTC                                                                                ]
[+] EMBL CD178070             [                                                                                                                                                   CGTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTATGACGCTTGGCCCCTCCCTTTCCAA                                                     ]
[-] EMBL CD178074             [                                                                                                                                                    GTCCATAGCAGTTACAGTTTTCCGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTATGACGCTT                                                                      ]




>consensus_7913#1
ATTATGCANTAGTAGCAATGAAAAGTACCAGTATATCNTCAAATGTGGCCCTCAACAGGN
CAGTGAAGCTNCNCCAAGAATCCACATGTCAGATTTAGCCACCAAAACCATACAATGTAC
GACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTCCGTTTGGCAT
GTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTCAACACACCAC
GAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGAGCAAGGCGAC
GAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTATGACGCTTGG
CCCCTCCCTTTCCAAGACCTTTCCCACCTTTACCTCTACCAGACATGACTCACCGCCTCG
TGCCGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7913#0      AGATATAATGACAATAGTAAGCAAATGAAAAGTAACAGTATATACATCAAAATGTTGGCC 60
consensus_7913#1      ----ATTATG-CANTAGTAGC--AATGAAAAGTACCAGTATAT-CNTCAAA-TGT-GGCC 50
                          ** *** ** *****    *********** ******** * ***** *** ****

consensus_7913#0      CTCAACAGGGCAGTGAAGCTCCACCAAGAATCCACATGTCAGATTTAGCCACCAAAACCA 120
consensus_7913#1      CTCAACAGGNCAGTGAAGCTNCNCCAAGAATCCACATGTCAGATTTAGCCACCAAAACCA 110
                      ********* ********** * *************************************

consensus_7913#0      TACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTC 180
consensus_7913#1      TACAATGTACGACCCTGGCGTTTCAAAGCATACACCACGTCCATAGCAGTTACAGTTTTC 170
                      ************************************************************

consensus_7913#0      CGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTC 240
consensus_7913#1      CGTTTGGCATGTTCCGTGTATGTGACGGCGTCACGAATAACATTTTCCAGGAATACTTTC 230
                      ************************************************************

consensus_7913#0      AACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGA 300
consensus_7913#1      AACACACCACGAGTTTCCTCGTAGATCAAACCAGAAATGCGTTTTACACCTCCACGGCGA 290
                      ************************************************************

consensus_7913#0      GCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTA 360
consensus_7913#1      GCAAGGCGACGAATAGCAGGCTTAGTAATTCCTTGGATATTGTCGCGCAGCACCTTTCTA 350
                      ************************************************************

consensus_7913#0      TGACGCTTGGCCCCTCCCTTTCCAAGACCTTTCCCACCTTTACCTCTACCAGACATGACT 420
consensus_7913#1      TGACGCTTGGCCCCTCCCTTTCCAAGACCTTTCCCACCTTTACCTCTACCAGACATGACT 410
                      ************************************************************

consensus_7913#0      CACCGAAAGACAGACTAGCAAACTAATCAGGTCTGAAATTAAAAAGAGCGTATTACGTAA 480
consensus_7913#1      CACCG-----CCTCGTGCCGAAT------------------------------------- 428
                      *****     *    *  * **                                      

consensus_7913#0      AATCCCTTAGAAAAGAAAGC 500
consensus_7913#1      --------------------