cluster # 7933

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Schistosoma mansoni
cluster # 7933 cluster # 7933 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7933#0 length = 744 sequences # 5

consensus_7933#1 length = 402 sequences # 1

consensusID : consensus_7933#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 744
fasta sequence

                              [TAAACTTGAAAAATTCAAGCCAGTATGTTTGGATTGTTATTATGATAACAAAAGTTTGAATGACTCTGAAGAACAACTTTGTTCATTCGCTTCTTCAAGTCGTGCATTTCTTGTAGCATCAAAATTAAAACCTAATAAAACTTGTCATGAAGTTCGCTCACGCAATGATCCGAAGACTGATGAGCTTATTAAGAGGTTTGAGGACCTTAAGAAGAATCAAGTCAAAGT---AGATGTCTCTCTTTTAGAATATCGATTCCGACAGCTCAAAGGACTGACTGAAGAAAAACCTGCTTCTTCTGAGAACTCTTCATTACCAAAGGCCGATCAAGTTTCTAAAATTGTGGAACGGTACATGGAAGAAGCACAGATTGATGCAAAATGTGGTGTTGATTTTGGTCTGGACGATGATCCCACTGTAATGGAAAATTCTCCTTCGTGCTATATGTGTGAAGGAGTTGCTGAGTTGTCGTGCAGAGAATGCGACGATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATAAACGAGAGAGATTTGAACATCAAACTGGAATTTGCAAATAAACTCCAATACAATTGTT-CGTCATTGTTTTCTTTTAAGATGAAATACATTACTATTATTATCCATTACTTCCCGTCATGTAGATACTTGATTTGACTTCAGACTCTGTTACTTGTCTTTCTCCTGCTCTCCGCTTACTGTTG-TTGACTTTTGTACATTTGTATTTAT-TTCTAATAATTAT]

[+] EMBL CD078953             [TAAACTTGAAAAATTCAAGCCAGTATGTTTGGATTGTTATTATGATAACAAAAGTTTGAATGACTCTGAAGAACAACTTTGTTCATTCGCTTCTTCAAGTCGTGCATTTCTTGTAGCATCAAAATTAAAACCTAATAAAACTTGTCATGAAGTTCGCTCACGCAATGATCCGAAGACTGATGAGCTTATTAAGAGGTTTGAGGACCTTAAGAAGAATCAAGTCAAAGT   AGATGTCTCTCTTTTAGAATATCGATTCCGACAGCTCAAAGGACTGACTGAAGAAAAACCTGCTTCTTCTGAGAACTCTTCATTACCAAAGGCCGATCAAGTTTCTAAAATTGTGGAACGGTACATGGAAGAAGCACAGATTGATGCAAAATGTGGTGTTGATTTTGGTCTGGACGATGATCCCACTGTAATGGAAAATTCTCCTTCGTGCTATATGTGTGAAGGAGTTGCTGAGTTGTCGTGCAGAGAATGCGACGATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATATACGAGAGAGATTTGAACATCATACTGGAATTTGCANATAAACTTCAATACAATTGTT CGTCATTGTTTTCTTTTAAGATGAAATACATTACTATTATTATCCAT                                                                                                                     ]
[+] EMBL CD078791             [                                                                  TGAAGAACAACTTTGTTCATTCGCTTCTTCAAGTCGTGCATTTCTTGTAGCATCAAAATTAAAACCTAATAAAACTTGTCATGAAGTTCGCTCACGCAATGATCCGAAGACTGATGAGCTTATTAAGAGGTTTGAGGACCTTAAGAAGAATCAAGTCAAAGTAGAAGATGTCTCTCTTTTAGAATATCGATTCCGACAGCTCAAAGGACTGACTGAAGAAAAACCTGCTTCTTCTGAGAACTCTTCATTACCAAAGGCCGATCAAGTTTCTAAAATTGTGGAACGGTACATGGAAGAAGCACAGATTGATGCAAAATGTGGTGTTGATTTTGGTCTGGACGATGATCCCACTGTAATGGAAAATTCTCCTTCGTGCTATATGTGTGAAGGAGTTGCTGAGTTGTCGTGCAGAGAATGCGACGATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATAAACGAGAGAGATTTGAACATCAAACTGGAATTTGCAAATAAACTCCAATACAATTGTT CGTCATTGTTTTCTTTTAAGATGAAATACATTACTATTATTATCCATTACTTCCCGTCATGTAGATACTTGATTTGACTTCAGACTCTGNTACTTGTCTTTCTCCTGCTCTCCGCTTACTGGTG NTGACTTTTGTACATTTGTATTTAT TTCTAATAAaat ]
[-] EMBL CD073407             [                                                                                                                                                        TTCGCTCACGCAATGATCCGAAGACTGATGAGCTTATTAAGAGGTTTGAGGACCTTAAGAAGAATCAAGTCAAAGT   AGATGTCTCTCTTTTAGAATATCGATTCCGACAGCTCAAAGGACTGACTGAAGAAAAACCTGCTTCTTCTGAGAACTCTTCATTACCAAAGGCCGATCAAGTTTCTAAAATTGTGGAACGGTACATGGAAGAAGCACAGATTGATGCAAAATGTGGTGTTGATTTTGGTCTGGACGATGATCCCACTGTAATGGAAAATTCTCCTTCGTGCTATATGTGTGAAGGAGTTGCTGAGTTGTCGTGCAGAGAATGCGACGATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATAAACGAGAGAGATTTGAACATCAAACTGGAATTTGCAAATAAACTTCAATACAATTGTT CGTCATTGTTTTCTTTTAAGATGAAATACATTACTATTATTATCCATTACTTCCCGTCATGTAGATACTTGATTTGACTTCAGACTCTGTTACTTGTCTTTCTCCTGCTCTCCGCTTACTGTTG TTGACTTTTGTACATTTGTATTTAT TTCTAATAGTTAT]
[-] EMBL CD073252             [                                                                                                                                                                           GAAGACTGATGAGCTTATTAAGAGGTTTGAGGACCTTAAGAAGAATCAAGTCAAAGTAGAAGATGTCTCTCTTTTAGAATATCGATTCCGACAGCTCAAAGGACTGACTGAAGAAAAACCTGCTTCTTTTGAGAACTCTTCATTACCAAAGGCCGATCAAGTTTCTAAAATTGTGGAACGGTACATGGAAGAAGCACAGATTGATGCAAAATGTGGTGTTGATTTTGGTCTGGACGATGATCCCACTGTAATGGAAAATTCTCCTTCGTGCTATATGTGTGAAGGAGTTGCTGAGTTGTCGTGCAGAGAATGCGACGATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATAAACGAGAGAGATTTGAACATCAAACTGGAATTTGCAAATAAACTCCAATACAATTGTT CGTCATTGTTTTCTTTTAAGATGAAATACATTACTATTATTATCCATTACTTCCCGTCATGTAGATACTTGATTTGACTTCAGACTCTGTTACTTGTCTTTCTCCTGCTCTCCGCTTACTGTTG TTGACTTTTGTACATTTGTATTTAT TTCTAATAATTAT]
[-] EMBL SMAA69930            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATAAACGAGAGAGATTTGAACATCAAACTGGAATTTGCAAATAAACTCCAATACAATTGTTCCGTCATTGTTTTCTTTTAAAATGAAATACATTACTATTATTATCCATTACTTCCCGTCATGTAGATACTTGATTTGACTTCAGACGCTGTTACTTGTCTTTCTCCTGCTCTCCGCTTACTGTTGTTTGACTTTTGTACATTTGTATTTATNTTCTAATAATTAT]




>consensus_7933#0
TAAACTTGAAAAATTCAAGCCAGTATGTTTGGATTGTTATTATGATAACAAAAGTTTGAA
TGACTCTGAAGAACAACTTTGTTCATTCGCTTCTTCAAGTCGTGCATTTCTTGTAGCATC
AAAATTAAAACCTAATAAAACTTGTCATGAAGTTCGCTCACGCAATGATCCGAAGACTGA
TGAGCTTATTAAGAGGTTTGAGGACCTTAAGAAGAATCAAGTCAAAGTAGATGTCTCTCT
TTTAGAATATCGATTCCGACAGCTCAAAGGACTGACTGAAGAAAAACCTGCTTCTTCTGA
GAACTCTTCATTACCAAAGGCCGATCAAGTTTCTAAAATTGTGGAACGGTACATGGAAGA
AGCACAGATTGATGCAAAATGTGGTGTTGATTTTGGTCTGGACGATGATCCCACTGTAAT
GGAAAATTCTCCTTCGTGCTATATGTGTGAAGGAGTTGCTGAGTTGTCGTGCAGAGAATG
CGACGATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATAAACGAGAGAGATTTGA
ACATCAAACTGGAATTTGCAAATAAACTCCAATACAATTGTTCGTCATTGTTTTCTTTTA
AGATGAAATACATTACTATTATTATCCATTACTTCCCGTCATGTAGATACTTGATTTGAC
TTCAGACTCTGTTACTTGTCTTTCTCCTGCTCTCCGCTTACTGTTGTTGACTTTTGTACA
TTTGTATTTATTTCTAATAATTAT

consensusID : consensus_7933#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [CACCTGCTTAATTTACGCTTTAAAAAACTCTTGTGAAGACGGTGAACTACCTTTATTCCTCAAGATGCTTTGTGAACTATGTAGAGTTGAGTTTTCATCGTCGAATAAAAAGGTATTCAAAGATTAATTCAAATAGTCAGCAGAAATCCTGTAAAATGTGTGGCTCAGTACAATGTTCGAGATGTTTGAAGTTTAAACTTGAAAAATTTCAAGCCAGTATGTTTGGATTGTTATTATGATAACAAAAGTTTGAATGACTCTGAAGAACAACTTTGTTCATTCGCTTCTTCAAGGTATTCCGGCTTTTGGTTAATGTACCAGTCGTGCATTTCTTGTAGCATCAAAATTAAAACCTAATAAAACTTGTCATGAAGTTCGCTCACGCAATGGTATGAAAATTCC]

[+] EMBL CD197215             [CACCTGCTTAATTTACGCTTTAAAAAACTCTTGTGAAGACGGTGAACTACCTTTATTCCTCAAGATGCTTTGTGAACTATGTAGAGTTGAGTTTTCATCGTCGAATAAAAAGGTATTCAAAGATTAATTCAAATAGTCAGCAGAAATCCTGTAAAATGTGTGGCTCAGTACAATGTTCGAGATGTTTGAAGTTTAAACTTGAAAAATTTCAAGCCAGTATGTTTGGATTGTTATTATGATAACAAAAGTTTGAATGACTCTGAAGAACAACTTTGTTCATTCGCTTCTTCAAGGTATTCCGGCTTTTGGTTAATGTACCAGTCGTGCATTTCTTGTAGCATCAAAATTAAAACCTAATAAAACTTGTCATGAAGTTCGCTCACGCAATGGTATGAAAATTCC]




>consensus_7933#1
CACCTGCTTAATTTACGCTTTAAAAAACTCTTGTGAAGACGGTGAACTACCTTTATTCCT
CAAGATGCTTTGTGAACTATGTAGAGTTGAGTTTTCATCGTCGAATAAAAAGGTATTCAA
AGATTAATTCAAATAGTCAGCAGAAATCCTGTAAAATGTGTGGCTCAGTACAATGTTCGA
GATGTTTGAAGTTTAAACTTGAAAAATTTCAAGCCAGTATGTTTGGATTGTTATTATGAT
AACAAAAGTTTGAATGACTCTGAAGAACAACTTTGTTCATTCGCTTCTTCAAGGTATTCC
GGCTTTTGGTTAATGTACCAGTCGTGCATTTCTTGTAGCATCAAAATTAAAACCTAATAA
AACTTGTCATGAAGTTCGCTCACGCAATGGTATGAAAATTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7933#0      TAAACTTGAAAAATTCAAGCCAGTATGTTTGGATTGTTATTATGATAACAAAAGTTTGAA 60
consensus_7933#1      --CACCTGCTTAATTTACGC-------TTTAAAAAACTCTTGTGAAGACGG----TGAAC 47
                         ** **   **** * **       ***  *    * ** ***  **      *  * 

consensus_7933#0      TGACTCTGAAGAACAACTTTGTTCATTCGCTTCTTCAAGTCGTGCATTTCTTGTAGCATC 120
consensus_7933#1      TACCTTTATTCCTCAAGATGCTTTGTGAACTATGTAGAGTTGAGTTTTCATCGTCGAATA 107
                      *  ** *      ***  *  **  *   **   *  *** * *  **  * ** * ** 

consensus_7933#0      AAAA-----TTAAAACCTAATAAAACTTGTCATGAAGTTCGCTCACGCAATGATCCGAAG 175
consensus_7933#1      AAAAGGTATTCAAAGATTAATTCAAATAGTCAGCAGA---AATCCTGTAA-AATGTGTGG 163
                      ****     * ***   ****  ** * ****  *       **  * **  **  *  *

consensus_7933#0      ACTGATGAGCTTATTAAGAGGTTTGAGGACCTTAAGAAGAATCAAGTCAAAGTAGATGTC 235
consensus_7933#1      CTCAGTACAATGTTCGAGATGTTTGAAG--TTTAAACTTGAAAAATTTCAAGCCAGTATG 221
                           *    *  *  *** ****** *   ****     *  ** *  ***    * * 

consensus_7933#0      TCTCTTTTAGAATATCGATTCCGACAGCTCAAAGGACTGACTGAAGAAAAACCTGCTTCT 295
consensus_7933#1      TTTGGATTGTTATTATGATAACAAAAGTTTGAATGACT--CTGAAGAACAACTTTGTTCA 279
                      * *   **   **   ***  * * ** *  ** ****  ******** *** *  *** 

consensus_7933#0      TCTGAGAACTCTTCATTACCAAAGGCCGA--TCAAGTTTCTAAAATTGTGGAACGGTACA 353
consensus_7933#1      TTCG------CTTCTTCAAGGTATTCCGGCTTTTGGTTAATGTACCAGTCGTGCATTTCT 333
                      *  *      **** * *    *  ***   *   ***  *  *   ** *  *  * * 

consensus_7933#0      TGGAAGAAGCACAGATTGATGCAAAATGTGGTGTTGATTTTGGTCTGGACGATGATCCCA 413
consensus_7933#1      TGTA-GCATCA-AAATTAAAACCTAATA-------AAACTTGTCATGAAGTTCGCTCACG 384
                      ** * * * ** * *** *  *  ***         *  ***   ** *    * ** * 

consensus_7933#0      CTGTAATG-GAAAATTCTCCTTCGTGCTATATGTGTGAAGGAGTTGCTGAGTTGTCGTGC 472
consensus_7933#1      CAATGGTATGAAAATTCC------------------------------------------ 402
                      *  *  *  ********                                           

consensus_7933#0      AGAGAATGCGACGATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATAAACGAGAG 532
consensus_7933#1      ------------------------------------------------------------
                                                                                  

consensus_7933#0      AGATTTGAACATCAAACTGGAATTTGCAAATAAACTCCAATACAATTGTTCGTCATTGTT 592
consensus_7933#1      ------------------------------------------------------------
                                                                                  

consensus_7933#0      TTCTTTTAAGATGAAATACATTACTATTATTATCCATTACTTCCCGTCATGTAGATACTT 652
consensus_7933#1      ------------------------------------------------------------
                                                                                  

consensus_7933#0      GATTTGACTTCAGACTCTGTTACTTGTCTTTCTCCTGCTCTCCGCTTACTGTTGTTGACT 712
consensus_7933#1      ------------------------------------------------------------
                                                                                  

consensus_7933#0      TTTGTACATTTGTATTTATTTCTAATAATTAT 744
consensus_7933#1      --------------------------------