|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 885 fasta sequence
[GGCAGGACTGATTCTAGATCTTTAGTCCACTTGCAATTATTAGTCTTTCGGAAGATGCACTCTACTTCAGATGAAGAATATATCCCTCCAGTCAAAGCTTCTAAATTGGAAGAAGACTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGCTGATTATTTAGGAACTCGAAACAATCCAAGGTTTGCTAATTAGTGCCAATAGTGGCAAAGTTTTAGATTTCCGACTGTTCACCGCTTTCCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGTGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAANAATCGCGTCTTGACTGGAAAGCATATGTAGAGAAAGAATCTCTGGAAGATGACCTCAAGCCCACNNACAAGGAAAGAAGGTATCTGGAANGGGCAGCATCTCACAGAGCAGTGACGTGATATCATATGACGACATTGAAAGTCACATCGAGTCGAAACTGATACACTTGCACATATTCGTATACGGATGTGCAGTATTATCAGATNACTCATGTTATGCAGCGCCAACTCAGGATTATGAGCAAAGTGGGGTATTACGCATAA]
[+] EMBL CD082164 [ AGGACTGATTCTAGATCTTTAGTCCACTTGCAATTATTAGTCTTTCGGAAGATGCACTCTACTTCAGATGAAGAATATATCCCTCCAGTCAAAGCTTCTAAATTGGAAGAAGACTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGCTGATTATTTAGGAACTCGAAACAATCCAAGGTTTGCTAATTAGTGCCAATAGTGGCAAAGTTTTAGATTTCCGACTGTTCACCGCTTTCCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGTGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAANAATCGCGTCTTGACTGGAAAGCATATGTAGAGAAAGAATCTCTGGAAGATGACCTCAAGCCCACNNACAAGGAAAGAAGGTATCTGGAANGGGCAGCATCTCACAGAGCAGTGACGTGATATCATATGACGACATTGAAAGTCACATCGAGTCGAAACTGATACACTTGCACATATTCGTATACGGATGTGCAGTATTATCAGATNACTCATGTTATGCAGCGCCAACTCAGGATTATGAGCAAAGTGGGGTATTACGCATAA]
[+] EMBL CD078792 [ggcaatttTGATTCTAGATCTTTAGTCCACTTGCAATTATGAGTCTTTCGGAAGATG ACTCTACTTCAGATGAAGAATATATCCCTCCAGTCAAAGCTTCTAAATTGGAAGAAGACTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGCTGATTATTTAGGAACTCGAAACAATCCAAGGTTTGCTAATTAGTGCCAATAGTGGCAAAGTTTTAGATTTCCGACTGTTCACCGCTTTCCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGTGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACANATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAg ]
consensusID : consensus_7937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 791 fasta sequence
[CTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGGAACTCGAAACAATCCAAGATTTCCGACTGTTCACCGCTTTTCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGGGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAATCTCTGGAAGATG-ACCTCAAAGCCCACAACAAAGGGAAAGAAGGGTATCTGGAAAGGCAAGCATTCTTCAACAGAGCAAGTGAACGTGAATATCAATATGAACGACAATTGAAAAAGTCAACATCGAGTCGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTTGCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACTTCAGTGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGTCCC]
[+] EMBL CD191729 [CTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGGAACTCGAAACAATCCAAGATTTCCGACTGTTCACCGCTTTTCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGGGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAATCTCTGGAAGATGAACCTC AAGCC ]
[-] EMBL CD073253 [ GACGAGTTTTTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAATCTCTGGAAGATG ACCTCAAAGCCCACAACAAAGGGAAAGAAGGGTATCTGGAAAGGCAAGCATTCTTCAACAGAGCAAGTGAACGTGAATATCAATATGAACGACAATTGAAAAAGTCAACATCGAGTCGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTTGCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACTTCAGTGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGT ]
[-] EMBL CD075780 [ AAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAATCTCTGGAAGATG ACCTCAAAGCCCACAACAAAGGGAAAGAAGGGTATCTGGAAAGGCAAGCATTCTTCAACAGAGCAAGTGAACGTGAATATCAATATGAACGACAATTGAAAAAGTCAACATCGAGTCGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTTGCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACTTCAGTGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGTCCC]
[-] EMBL AI976976 [ tCTGGAAGCAATATGTAGAGAAAAAATCTTTGGAATATG ACCTCAAAGCCCTCATCAAAGGGAAAGAAGGGTATTTGGAAAGGCAAGCATTTTTCAACAGAGCAAGTGAACGTGAATATCAATATGACCGACAATTGAAAAAGTCAACATCGAGTGGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTTGCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACTTCAGTGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7937#0 GGCAGGACTGATTCTAGATCTTTAGTCCACTTGCAATTATTAGTCTTTCGGAAGATGCAC 60
consensus_7937#1 ------------------------------------------------------------
consensus_7937#0 TCTACTTCAGATGAAGAATATATCCCTCCAGTCAAAGCTTCTAAATTGGAAGAAGACTCT 120
consensus_7937#1 --------------------------------------------------------CTCT 4
****
consensus_7937#0 GAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTC 180
consensus_7937#1 GAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTC 64
************************************************************
consensus_7937#0 ACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGCTGATTATTTAGGAACTCGAAACAA 240
consensus_7937#1 ACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAG------------GAACTCGAAACAA 112
*********************************** *************
consensus_7937#0 TCCAAGGTTTGCTAATTAGTGCCAATAGTGGCAAAGTTTTAGATTTCCGACTGTTCACCG 300
consensus_7937#1 TCCAAG------------------------------------ATTTCCGACTGTTCACCG 136
****** ******************
consensus_7937#0 CTTTCCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGTGGGACGAGTTTCTAAAA 360
consensus_7937#1 CTTTTCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGGGGGACGAGTTTCTAAAA 196
**** ************************************* *****************
consensus_7937#0 TCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAG 420
consensus_7937#1 TCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAG 256
************************************************************
consensus_7937#0 TTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGC 480
consensus_7937#1 TTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGC 316
************************************************************
consensus_7937#0 TTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCG 540
consensus_7937#1 TTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCG 376
************************************************************
consensus_7937#0 CATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTA 600
consensus_7937#1 CATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTA 436
************************************************************
consensus_7937#0 CCCAGGTTGTCTACCTTAGAANAATCGCGTCTTGACTGGAAAGCATATGTAGAGAAAGAA 660
consensus_7937#1 CCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAA 496
********************* ******************* ****************
consensus_7937#0 TCTCTGGAAGATGACCTCAA-GCCCACNN-ACAAGGAAAGAAGG-TATCTGGAANGGGCA 717
consensus_7937#1 TCTCTGGAAGATGACCTCAAAGCCCACAACAAAGGGAAAGAAGGGTATCTGGAAAGGCAA 556
******************** ****** * * ********** ********* ** *
consensus_7937#0 GCATCTC---ACAGAGCA-GTGA-CGTGA-TATCA-TATGA-CGACATT---GAAAGTCA 766
consensus_7937#1 GCATTCTTCAACAGAGCAAGTGAACGTGAATATCAATATGAACGACAATTGAAAAAGTCA 616
**** ******** **** ***** ***** ***** ***** * *******
consensus_7937#0 -CATCGAGTCGAAA---CTGA-TAC-ACT-TGCACATA-TTCGTATACGGATG------T 812
consensus_7937#1 ACATCGAGTCGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTT 676
********** ** **** *** *** ******** ***** ** * * *
consensus_7937#0 GCAGTA--TTATCAGATN----ACTCATGT---TATGCAGCGCCAACTCAGGATTATGAG 863
consensus_7937#1 GCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACT-TCAG 735
***** ****** ***** * ***** ** * * * * **
consensus_7937#0 CAAAGTGGGGTATTACGCATAA---------------------------------- 885
consensus_7937#1 TGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGTCCC 791
* * * * * ***
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||